Rh2AG608200

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000679
Physical Location & Seq
Forward (+)
83556647 .. 83557183
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG608200.1

Sequence Viewer

Length: 537 bp
ATGACCCTCAGGCCAAAATTTTCTAGGCCTCAATGTCGACTCCTTCCTACACTCAGAACACCTCACACTCTGTCTTTGTCTGCATTCATTGTGAATGTGGGTGATTCAGAGTGTCTTTCAGACCTCTCAAGTGGCGATGGTGGTAATTCAAAGGGTCTTCAGATCCTTTCAACTGGTAGCAGCAGTGATACAAAGTGTATCCAGGACCTTCCAGCTGACAATGATGTTGATTCAAAGTGCCTTCAGGACCTTTCACTTGACTCTGGTAGTGATTCAAAGTGTATTGAAGACGAAATATGGAGCTCAAGTGTCACTAGCCATGGGGAAGAGAAACCCTCCTCTAGGTATCCTGAAATGAACTCTACACAGGATAAAGCACACTGTTTGCACCCAAGGTTCCTTCAATTCTTGAAGCTAGATCCTCTACTCCATGGTCAGAATGATATTGATGTGCTTGCTGGAGAGACTGACACTGCAAAGGGAGAGTGCAATGCAGGGGATGAGAATACAAGCGAATCATATTTCATTCATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

178

Amino Acids

19.32

Weight (kDa)

4.67

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 37
AclWI GGATC 2 cut(s) 157, 413
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 2 cut(s) 143, 227
AfiI CCNNNNNNNGG 1 cut(s) 342
AgsI TTSAA 7 cut(s) 150, 171, 234, 276, 287, 404, 412
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 3 cut(s) 215, 303, 415
AluI AGCT 3 cut(s) 215, 303, 415
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 458
AlwI GGATC 2 cut(s) 157, 413
AoxI GGCC 2 cut(s) 11, 26
ApeKI GCWGC 1 cut(s) 180
ApoI RAATTY 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 205, 247
AsuHPI GGTGA 1 cut(s) 113
AvaII GGWCC 2 cut(s) 205, 247
AxyI CCTNAGG 1 cut(s) 8
BanII GRGCYC 1 cut(s) 305
BbsI GAAGAC 2 cut(s) 149, 294
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 192
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 203
BciVI GTATCC 2 cut(s) 209, 357
BcoDI GTCTC 1 cut(s) 458
BfaI CTAG 4 cut(s) 24, 315, 342, 416
BfuI GTATCC 2 cut(s) 209, 357
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 2 cut(s) 205, 247
BmgT120I GGNCC 2 cut(s) 205, 247
BmiI GGNNCC 1 cut(s) 398
BmrFI CCNGG 1 cut(s) 203
BpiI GAAGAC 2 cut(s) 149, 294
BplI GAGNNNNNCTC 2 cut(s) 320, 352
BpmI CTGGAG 1 cut(s) 480
BpuEI CTTGAG 2 cut(s) 112, 289
BsaJI CCNNGG 3 cut(s) 319, 392, 430
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse1I ACTGG 1 cut(s) 178
Bse21I CCTNAGG 1 cut(s) 8
Bse3DI GCAATG 1 cut(s) 496
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 3 cut(s) 319, 392, 430
BseGI GGATG 1 cut(s) 505
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMI GCAATG 1 cut(s) 496
BseMII CTCAG 2 cut(s) 22, 67
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 328
BseXI GCAGC 1 cut(s) 192
BshFI GGCC 2 cut(s) 13, 28
BsiHKAI GWGCWC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 1 cut(s) 458
BsmI GAATGC 1 cut(s) 83
BsnI GGCC 2 cut(s) 13, 28
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 2 cut(s) 162, 418
Bsp19I CCATGG 2 cut(s) 319, 430
BspANI GGCC 2 cut(s) 13, 28
BspCNI CTCAG 2 cut(s) 21, 66
BspLI GGNNCC 1 cut(s) 398
BspPI GGATC 2 cut(s) 157, 413
BsrDI GCAATG 1 cut(s) 496
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 3 cut(s) 319, 392, 430
BssMI GATC 2 cut(s) 162, 418
BssT1I CCWWGG 3 cut(s) 319, 392, 430
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 383
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 2 cut(s) 8, 53
BstDSI CCRYGG 2 cut(s) 319, 430
BstENI CCTNNNNNAGG 1 cut(s) 340
BstF5I GGATG 1 cut(s) 505
BstKTI GATC 2 cut(s) 165, 421
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 2 cut(s) 162, 418
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 192
BstV2I GAAGAC 2 cut(s) 149, 294
BstX2I RGATCY 2 cut(s) 162, 418
BstYI RGATCY 2 cut(s) 162, 418
Bsu36I CCTNAGG 1 cut(s) 8
BsuI GTATCC 2 cut(s) 209, 357
BsuRI GGCC 2 cut(s) 13, 28
BtgI CCRYGG 2 cut(s) 319, 430
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 505
BtsI GCAGTG 2 cut(s) 190, 471
BtsIMutI CAGTG 3 cut(s) 190, 379, 471
Cac8I GCNNGC 1 cut(s) 456
Cfr13I GGNCC 2 cut(s) 205, 247
CviAII CATG 3 cut(s) 320, 431, 530
CviJI RGCY 6 cut(s) 13, 28, 215, 303, 318, 415
CviKI_1 RGCY 6 cut(s) 13, 28, 215, 303, 318, 415
DdeI CTNAG 2 cut(s) 8, 53
DpnI GATC 2 cut(s) 164, 420
DpnII GATC 2 cut(s) 162, 418
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Ecl136II GAGCTC 1 cut(s) 303
Eco130I CCWWGG 3 cut(s) 319, 392, 430
Eco147I AGGCCT 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 305
Eco47I GGWCC 2 cut(s) 205, 247
Eco53kI GAGCTC 1 cut(s) 303
Eco57I CTGAAG 2 cut(s) 143, 227
Eco81I CCTNAGG 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 303
EcoNI CCTNNNNNAGG 1 cut(s) 340
EcoO109I RGGNCCY 2 cut(s) 205, 247
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 3 cut(s) 319, 392, 430
EcoT38I GRGCYC 1 cut(s) 305
ErhI CCWWGG 3 cut(s) 319, 392, 430
FaeI CATG 3 cut(s) 323, 434, 533
FaiI YATR 5 cut(s) 298, 321, 432, 520, 531
FatI CATG 3 cut(s) 319, 430, 529
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 181
FokI GGATG 1 cut(s) 512
FriOI GRGCYC 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 181
FspBI CTAG 4 cut(s) 24, 315, 342, 416
GluI GCNGC 1 cut(s) 181
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 2 cut(s) 13, 28
Hin1II CATG 3 cut(s) 323, 434, 533
HincII GTYRAC 1 cut(s) 38
HindII GTYRAC 1 cut(s) 38
HinfI GANTC 6 cut(s) 39, 104, 230, 260, 272, 515
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 38
Hpy188I TCNGA 5 cut(s) 56, 109, 121, 162, 438
Hpy188III TCNNGA 3 cut(s) 245, 350, 409
Hpy8I GTNNAC 1 cut(s) 38
HpyAV CCTTC 4 cut(s) 53, 218, 251, 410
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4V TGCA 5 cut(s) 83, 388, 476, 489, 494
HpyF3I CTNAG 2 cut(s) 8, 53
Hsp92II CATG 3 cut(s) 323, 434, 533
Kzo9I GATC 2 cut(s) 162, 418
LmnI GCTCC 1 cut(s) 300
Lsp1109I GCAGC 1 cut(s) 192
MaeI CTAG 4 cut(s) 24, 315, 342, 416
MaeIII GTNAC 1 cut(s) 310
MalI GATC 2 cut(s) 164, 420
MboI GATC 2 cut(s) 162, 418
MboII GAAGA 3 cut(s) 149, 299, 338
MflI RGATCY 2 cut(s) 162, 418
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 3 cut(s) 17, 145, 404
MlyI GAGTC 2 cut(s) 33, 254
MnlI CCTC 7 cut(s) 17, 39, 72, 134, 346, 349, 432
MspA1I CMGCKG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 83
MvaI CCWGG 1 cut(s) 203
NcoI CCATGG 2 cut(s) 319, 430
NdeII GATC 2 cut(s) 162, 418
NlaIII CATG 3 cut(s) 323, 434, 533
NlaIV GGNNCC 1 cut(s) 398
NmuCI GTSAC 1 cut(s) 310
PceI AGGCCT 1 cut(s) 28
PctI GAATGC 1 cut(s) 83
PfeI GAWTC 4 cut(s) 104, 230, 272, 515
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 1 cut(s) 182
PleI GAGTC 2 cut(s) 33, 254
PpsI GAGTC 2 cut(s) 33, 254
PpuMI RGGWCCY 2 cut(s) 205, 247
Psp124BI GAGCTC 1 cut(s) 305
Psp5II RGGWCCY 2 cut(s) 205, 247
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 2 cut(s) 205, 247
PspPPI RGGWCCY 2 cut(s) 205, 247
PsuI RGATCY 2 cut(s) 162, 418
PvuII CAGCTG 1 cut(s) 215
SacI GAGCTC 1 cut(s) 305
SalI GTCGAC 1 cut(s) 36
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 2 cut(s) 162, 418
Sau96I GGNCC 2 cut(s) 205, 247
SchI GAGTC 2 cut(s) 33, 254
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 1 cut(s) 305
SetI ASST 9 cut(s) 64, 126, 210, 217, 252, 305, 347, 398, 417
SinI GGWCC 2 cut(s) 205, 247
SmlI CTYRAG 2 cut(s) 127, 304
SmoI CTYRAG 2 cut(s) 127, 304
Sse9I AATT 3 cut(s) 17, 145, 404
SseBI AGGCCT 1 cut(s) 28
SspMI CTAG 4 cut(s) 24, 315, 342, 416
SstI GAGCTC 1 cut(s) 305
StuI AGGCCT 1 cut(s) 28
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 3 cut(s) 319, 392, 430
TaaI ACNGT 1 cut(s) 383
TaqI TCGA 1 cut(s) 37
TasI AATT 3 cut(s) 17, 145, 404
TfiI GAWTC 4 cut(s) 104, 230, 272, 515
TscAI CASTG 3 cut(s) 190, 386, 478
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 180
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 4 cut(s) 76, 371, 514, 518
TspRI CASTG 3 cut(s) 190, 386, 478
VpaK11BI GGWCC 2 cut(s) 205, 247
XagI CCTNNNNNAGG 1 cut(s) 340
XapI RAATTY 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 37
XspI CTAG 4 cut(s) 24, 315, 342, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.