Rh2CG589800

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000679
Physical Location & Seq
Forward (+)
76673827 .. 76674549
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG589800.1

Sequence Viewer

Length: 366 bp
ATGAAAAACTTCTCCTCGAACTCAATTGTTACGCAAAGAGCTGTAGACCTGGCAACCTCTCAAGAGATGCGTTACATAGTGCTGAATCCAACCACTGTTAGCCTTATTGATCATGCCTTCCCCAATCAATTTGAATGTATGGCTCTGGAGTTGGCAGATGAAGACACCACTACCAAAAGAAATGTTAACTCAAACACCAAGGCAGAGGTTTGTAAGTTCTTCAAACCTCATCAAGGATGTGTCAGGGGAGCAAAGTGCTTTAATGCACATTGTGAGGAGTGTCAGAAAGTGAAGGAGGAAGCAGACTGGAATCATTCTTCTGCTGCTAAACTAAAACGCAAAGGCTCAGTTTGGGAATGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

121

Amino Acids

13.72

Weight (kDa)

7.59

Isoelectric Point (pI)

27.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 45
AdeI CACNNNGTG 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 2 cut(s) 134, 223
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 50
BclI TGATCA 1 cut(s) 109
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 311
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 242
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 2 cut(s) 4, 290
BseXI GCAGC 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 233
BsmI GAATGC 1 cut(s) 362
Bsp143I GATC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 359
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 346
BstENI CCTNNNNNAGG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 242
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 93
CviAII CATG 1 cut(s) 113
CviJI RGCY 4 cut(s) 41, 102, 143, 345
CviKI_1 RGCY 4 cut(s) 41, 102, 143, 345
DdeI CTNAG 1 cut(s) 346
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
DraIII CACNNNGTG 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 198
EcoNI CCTNNNNNAGG 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 1 cut(s) 116
FaiI YATR 3 cut(s) 77, 114, 140
FatI CATG 1 cut(s) 112
FbaI TGATCA 1 cut(s) 109
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 324
GluI GCNGC 1 cut(s) 324
GsuI CTGGAG 1 cut(s) 167
Hin1II CATG 1 cut(s) 116
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 2 cut(s) 85, 310
HpaI GTTAAC 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 46, 187
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 2 cut(s) 62, 146
Hpy8I GTNNAC 2 cut(s) 46, 187
HpyAV CCTTC 2 cut(s) 127, 286
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 346
Hsp92II CATG 1 cut(s) 116
Ksp22I TGATCA 1 cut(s) 109
KspAI GTTAAC 1 cut(s) 187
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 5 cut(s) 35, 62, 131, 229, 292
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 28, 71
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 3 cut(s) 173, 211, 309
MfeI CAATTG 1 cut(s) 24
MluCI AATT 2 cut(s) 24, 128
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 6 cut(s) 25, 67, 199, 237, 268, 289
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 186, 261, 364
MspR9I CCNGG 1 cut(s) 50
MunI CAATTG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 362
MvaI CCWGG 1 cut(s) 50
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 116
PctI GAATGC 1 cut(s) 362
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 85, 310
PkrI GCNGC 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
SaqAI TTAA 3 cut(s) 186, 261, 364
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 50
SetI ASST 5 cut(s) 43, 51, 59, 210, 229
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 2 cut(s) 24, 128
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 17
TasI AATT 2 cut(s) 24, 128
TfiI GAWTC 2 cut(s) 85, 310
Tru1I TTAA 3 cut(s) 186, 261, 364
Tru9I TTAA 3 cut(s) 186, 261, 364
TscAI CASTG 1 cut(s) 100
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 2 cut(s) 17, 174
TspRI CASTG 1 cut(s) 100
XagI CCTNNNNNAGG 1 cut(s) 231
XmiI GTMKAC 1 cut(s) 45
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.