RchiOBHm_Chr2g0169051

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000679
Physical Location & Seq
Forward (+)
83340499 .. 83340984
486 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53668

Sequence Viewer

Length: 246 bp
ATGAGAATTGTATTGCTTCTTCTCAAGCATGGCGCTCTAGTAAGCCAAAGGAATAACTTGGGGTTGACAGAATTTCATATTGCTGCCAGTAATGGTAATTCTGAGGCCCTTGAGGTCCTTCTGTTGGAAGACCCAGATGGAGTGCATATAAGTGATGAAACTGAATGTATGCATTTGAACATTGTACTCAATGTAAGAACACAGACTTACCTGGAGTTGCAGCCATTGTTGAAGATTACAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

81

Amino Acids

9.05

Weight (kDa)

4.96

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 71
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 2 cut(s) 178, 232
AjnI CCWGG 1 cut(s) 210
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 2 cut(s) 83, 220
ApoI RAATTY 1 cut(s) 71
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 2 cut(s) 106, 115
AvaII GGWCC 1 cut(s) 115
BarI GAAGNNNNNNTAC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 70, 232
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 212
BfaI CTAG 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 36
BisI GCNGC 2 cut(s) 84, 221
BlsI GCNGC 2 cut(s) 85, 222
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 106, 115
BmrFI CCNGG 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 233
BpuEI CTTGAG 2 cut(s) 8, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 87
BseBI CCWGG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 87
BseXI GCAGC 2 cut(s) 70, 232
BshFI GGCC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 124
BsnI GGCC 1 cut(s) 107
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 94
BsrI ACTGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 102
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 210
BstV1I GCAGC 2 cut(s) 70, 232
BstV2I GAAGAC 1 cut(s) 135
BsuRI GGCC 1 cut(s) 107
CfoI GCGC 1 cut(s) 35
Cfr13I GGNCC 2 cut(s) 106, 115
Csp6I GTAC 1 cut(s) 185
CviAII CATG 1 cut(s) 29
CviJI RGCY 3 cut(s) 45, 107, 223
CviKI_1 RGCY 3 cut(s) 45, 107, 223
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 115
EcoO109I RGGNCCY 2 cut(s) 106, 115
EcoRII CCWGG 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 174
FaeI CATG 1 cut(s) 32
FaiI YATR 5 cut(s) 30, 78, 147, 149, 170
FatI CATG 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 84, 221
Fsp4HI GCNGC 2 cut(s) 84, 221
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 34
GluI GCNGC 2 cut(s) 84, 221
GsuI CTGGAG 1 cut(s) 233
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 1 cut(s) 107
HhaI GCGC 1 cut(s) 35
Hin1II CATG 1 cut(s) 32
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 66
HpyAV CCTTC 1 cut(s) 128
HpyCH4V TGCA 3 cut(s) 145, 172, 220
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 1 cut(s) 32
HspAI GCGC 1 cut(s) 33
LpnPI CCDG 4 cut(s) 100, 147, 197, 224
Lsp1109I GCAGC 2 cut(s) 70, 232
MaeI CTAG 1 cut(s) 38
MboII GAAGA 3 cut(s) 11, 140, 244
MluCI AATT 3 cut(s) 6, 71, 97
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 2 cut(s) 97, 106
Mph1103I ATGCAT 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
NlaIII CATG 1 cut(s) 32
NsiI ATGCAT 1 cut(s) 174
PkrI GCNGC 2 cut(s) 85, 222
PpuMI RGGWCCY 1 cut(s) 115
Psp5II RGGWCCY 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspPI GGNCC 2 cut(s) 106, 115
PspPPI RGGWCCY 1 cut(s) 115
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 150
SatI GCNGC 2 cut(s) 84, 221
Sau96I GGNCC 2 cut(s) 106, 115
ScrFI CCNGG 1 cut(s) 212
SetI ASST 2 cut(s) 117, 213
SgeI CNNG 9 cut(s) 37, 41, 50, 70, 99, 122, 146, 223, 224
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 2 cut(s) 23, 110
SmoI CTYRAG 2 cut(s) 23, 110
Sse9I AATT 3 cut(s) 6, 71, 97
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 210
TasI AATT 3 cut(s) 6, 71, 97
TatI WGTACW 1 cut(s) 184
TseI GCWGC 2 cut(s) 83, 220
TspDTI ATGAA 2 cut(s) 65, 171
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 1 cut(s) 71
XspI CTAG 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.