RLG00000021828

ankyrin repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000679
Physical Location & Seq
Forward (+)
78654867 .. 78656745
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021828

Sequence Viewer

Length: 705 bp
ATGAGAGGCAAGAAAGTTGAAATAAAAAATTTGATTCCAAAATTGGTTTTGGGAGCTGAGCTTGAGAAGAATTTTCAGTATCAGCTTCCACTTCAGAAGTCGAACGAGAATTTTATGGAAGCTGATAACCCTGAACAAAGTTCTTGGGCTGATAGATTAGTCCTTGGACAACCAGCGGCTTGTTCCTTTGAACCTCAAGCACATGTTACCAAGAGCTCTGAGGACCCAAGCACTCCTACATGGCTGAAGGTTTTCAGGAAGTGGTTTCCTGGGTTCTTACAAGGGGATGAGAATACAAGCGAATCATATTTCATTCATGACCCTGATTCTCGCAAGGTTAAAGGCACAACAAACCTTATGTGGGTTTTAAAAGAATGCGTACTCGCTGACTCAGATAGTGTCGAGAAATTCACACTGATAACCGACCATGTGCTTGCTACAAAGTGTGGTTACGATCTAGAAGCCACTCAAACATGGAAGCACATGGCGCGTTCCATCAGCAATGAGGTCAGAGCTGGAATAGATCCAGATCGTGTACGGAGAGTAGGCATGGCTGGTCGTTTGATGGAGAGAAGGGCCAATGCCAACTCCTCTGAATTCTTGATCGCTGGATTACAATCTGAGGATCCAACATGTTTTCAATCTGAAGAAGCCTTTAGTTCTGAAGCTCCGCAAATTGTAATCTGGGTAGAAGTTCAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

235

Amino Acids

26.5

Weight (kDa)

5.25

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 490
AciI CCGC 2 cut(s) 176, 671
AclWI GGATC 3 cut(s) 518, 620, 633
AcsI RAATTY 6 cut(s) 28, 70, 109, 407, 596, 699
AcuI CTGAAG 4 cut(s) 77, 266, 666, 684
AfaI GTAC 2 cut(s) 381, 537
AfiI CCNNNNNNNGG 1 cut(s) 361
AflIII ACRYGT 2 cut(s) 202, 632
AgsI TTSAA 4 cut(s) 20, 191, 641, 698
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 7 cut(s) 56, 61, 85, 122, 216, 515, 668
AluI AGCT 7 cut(s) 56, 61, 85, 122, 216, 515, 668
Alw21I GWGCWC 1 cut(s) 218
AlwI GGATC 3 cut(s) 518, 620, 633
AoxI GGCC 1 cut(s) 576
ApoI RAATTY 6 cut(s) 28, 70, 109, 407, 596, 699
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 2 cut(s) 223, 576
AvaII GGWCC 1 cut(s) 223
BamHI GGATCC 1 cut(s) 625
BanII GRGCYC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 218
BccI CCATC 2 cut(s) 503, 559
BciT130I CCWGG 1 cut(s) 270
BfaI CTAG 1 cut(s) 458
BisI GCNGC 1 cut(s) 177
BlpI GCTNAGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 223, 576
BmiI GGNNCC 2 cut(s) 225, 627
BmrFI CCNGG 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 57
BpuEI CTTGAG 2 cut(s) 83, 180
BsaBI GATNNNNATC 2 cut(s) 528, 616
BsaJI CCNNGG 2 cut(s) 163, 269
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse3DI GCAATG 1 cut(s) 508
Bse8I GATNNNNATC 2 cut(s) 528, 616
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 2 cut(s) 163, 269
BseGI GGATG 1 cut(s) 292
BseJI GATNNNNATC 2 cut(s) 528, 616
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 4 cut(s) 48, 210, 405, 612
BseRI GAGGAG 1 cut(s) 580
Bsh1236I CGCG 1 cut(s) 490
BshFI GGCC 1 cut(s) 578
BsiHKAI GWGCWC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 361
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 1 cut(s) 578
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 5 cut(s) 454, 523, 529, 603, 625
Bsp1720I GCTNAGC 1 cut(s) 57
BspACI CCGC 2 cut(s) 176, 671
BspANI GGCC 1 cut(s) 578
BspCNI CTCAG 4 cut(s) 49, 211, 404, 613
BspFNI CGCG 1 cut(s) 490
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 2 cut(s) 225, 627
BspPI GGATC 3 cut(s) 518, 620, 633
BsrDI GCAATG 1 cut(s) 508
BssECI CCNNGG 2 cut(s) 163, 269
BssMI GATC 5 cut(s) 454, 523, 529, 603, 625
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 4 cut(s) 57, 219, 391, 621
BstF5I GGATG 1 cut(s) 292
BstFNI CGCG 1 cut(s) 490
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 5 cut(s) 457, 526, 532, 606, 628
BstMBI GATC 5 cut(s) 454, 523, 529, 603, 625
BstMWI GCNNNNNNNGC 1 cut(s) 487
BstNI CCWGG 1 cut(s) 270
BstNSI RCATGY 2 cut(s) 206, 636
BstSCI CCNGG 1 cut(s) 268
BstUI CGCG 1 cut(s) 490
BstX2I RGATCY 2 cut(s) 523, 625
BstYI RGATCY 2 cut(s) 523, 625
BsuRI GGCC 1 cut(s) 578
BtsCI GGATG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 413
Cac8I GCNNGC 1 cut(s) 435
CciI TCATGA 1 cut(s) 316
CfoI GCGC 1 cut(s) 490
Cfr13I GGNCC 2 cut(s) 223, 576
Csp6I GTAC 2 cut(s) 380, 536
CviAII CATG 8 cut(s) 203, 240, 317, 428, 474, 484, 550, 633
CviQI GTAC 2 cut(s) 380, 536
DdeI CTNAG 4 cut(s) 57, 219, 391, 621
DpnI GATC 5 cut(s) 456, 525, 531, 605, 627
DpnII GATC 5 cut(s) 454, 523, 529, 603, 625
DraI TTTAAA 1 cut(s) 369
Ecl136II GAGCTC 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 216
Eco57I CTGAAG 4 cut(s) 77, 266, 666, 684
EcoICRI GAGCTC 1 cut(s) 216
EcoO109I RGGNCCY 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 8 cut(s) 206, 243, 320, 431, 477, 487, 553, 636
FatI CATG 8 cut(s) 202, 239, 316, 427, 473, 483, 549, 632
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 299
FriOI GRGCYC 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 1 cut(s) 458
GlaI GCGC 1 cut(s) 489
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 1 cut(s) 578
HhaI GCGC 1 cut(s) 490
Hin1II CATG 8 cut(s) 206, 243, 320, 431, 477, 487, 553, 636
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HinfI GANTC 4 cut(s) 34, 302, 326, 389
Hpy166II GTNNAC 1 cut(s) 536
Hpy188I TCNGA 8 cut(s) 96, 220, 394, 512, 595, 622, 646, 664
Hpy188III TCNNGA 6 cut(s) 256, 317, 403, 458, 527, 601
Hpy8I GTNNAC 1 cut(s) 536
HpyAV CCTTC 2 cut(s) 241, 567
HpyF10VI GCNNNNNNNGC 1 cut(s) 487
HpyF3I CTNAG 4 cut(s) 57, 219, 391, 621
Hsp92II CATG 8 cut(s) 206, 243, 320, 431, 477, 487, 553, 636
HspAI GCGC 1 cut(s) 488
Kzo9I GATC 5 cut(s) 454, 523, 529, 603, 625
LmnI GCTCC 2 cut(s) 53, 673
MaeI CTAG 1 cut(s) 458
MaeIII GTNAC 2 cut(s) 205, 449
MalI GATC 5 cut(s) 456, 525, 531, 605, 627
MboI GATC 5 cut(s) 454, 523, 529, 603, 625
MboII GAAGA 2 cut(s) 79, 659
MflI RGATCY 2 cut(s) 523, 625
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 8 cut(s) 28, 41, 70, 109, 407, 596, 675, 699
MlyI GAGTC 1 cut(s) 383
MmeI TCCRAC 1 cut(s) 653
MnlI CCTC 5 cut(s) 204, 214, 499, 601, 616
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 2 cut(s) 339, 368
MspA1I CMGCKG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 1 cut(s) 270
MvnI CGCG 1 cut(s) 490
MwoI GCNNNNNNNGC 1 cut(s) 487
NdeII GATC 5 cut(s) 454, 523, 529, 603, 625
NlaIII CATG 8 cut(s) 206, 243, 320, 431, 477, 487, 553, 636
NlaIV GGNNCC 2 cut(s) 225, 627
NspI RCATGY 2 cut(s) 206, 636
PagI TCATGA 1 cut(s) 316
PciI ACATGT 2 cut(s) 202, 632
PctI GAATGC 1 cut(s) 380
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 3 cut(s) 34, 302, 326
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
PpuMI RGGWCCY 1 cut(s) 223
PscI ACATGT 2 cut(s) 202, 632
Psp124BI GAGCTC 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 2 cut(s) 225, 627
PspPI GGNCC 2 cut(s) 223, 576
PspPPI RGGWCCY 1 cut(s) 223
PsuI RGATCY 2 cut(s) 523, 625
RsaI GTAC 2 cut(s) 381, 537
RsaNI GTAC 2 cut(s) 380, 536
SacI GAGCTC 1 cut(s) 218
SaqAI TTAA 2 cut(s) 339, 368
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 5 cut(s) 454, 523, 529, 603, 625
Sau96I GGNCC 2 cut(s) 223, 576
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 1 cut(s) 218
SinI GGWCC 1 cut(s) 223
SmlI CTYRAG 2 cut(s) 62, 195
SmoI CTYRAG 2 cut(s) 62, 195
Sse9I AATT 8 cut(s) 28, 41, 70, 109, 407, 596, 675, 699
SsiI CCGC 2 cut(s) 176, 671
SspMI CTAG 1 cut(s) 458
SstI GAGCTC 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 1 cut(s) 163
TaqI TCGA 2 cut(s) 101, 402
TasI AATT 8 cut(s) 28, 41, 70, 109, 407, 596, 675, 699
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 3 cut(s) 34, 302, 326
Tru1I TTAA 2 cut(s) 339, 368
Tru9I TTAA 2 cut(s) 339, 368
TscAI CASTG 1 cut(s) 420
TspDTI ATGAA 2 cut(s) 301, 305
TspGWI ACGGA 1 cut(s) 553
TspRI CASTG 1 cut(s) 420
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 6 cut(s) 28, 70, 109, 407, 596, 699
XbaI TCTAGA 1 cut(s) 457
XceI RCATGY 2 cut(s) 206, 636
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.