Rh6CG029400

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000679
Physical Location & Seq
Forward (+)
2647122 .. 2648362
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG029400.1

Sequence Viewer

Length: 1158 bp
ATGCAAGCGAACTACATCACCATGAGAGGCAAGAAAGTTGAAATAAAAAGTTTGATTCCAAAATTGGTTTTGGGAGCTGAGTTTGAGAAAATGTCACCTCAACAACGAGAACAAGAGAAGAATTTTCAATATCAGCTTCCACTGCAGAAGTCGAACGAGTATATTATTGAAGGTGATAACCCTGAACAAGGTTCTTGCGCTGATAGATTAGTCCTTGGACAACCAGCGGCATGTTCCATTGAACCTCAAGCTCATGTTACCAAGAGCTCTGAGGACCCAAGCACTCCTACATGGCTAAAGGTTTTCAAGAAGTGGTTTCCTGGTTTCTTACAAGGTCTGCTGAAGCACTCAAAGTATGCTCTCTCTTCTCTAAAAGCTGATTTCAGGGCTAAATTTGGGTTAGAACTGGATCATTCATCTGTGGGCTACTTCAAGCTCAGTGACTTCCTGAAATGTTTCTCCAATTTATGTACCGTTGAGATTCTCTCTATATGCAAACGTGGACCACCCAGTCACATGATCGTCCGGCCAAAGTTTTTTAGGCCTCAACGCCGACTCCTTCATACACTCAGAACACCTCATACTCTGTCATTTTTTGCATTGATTGAGAATGGTGGTGATTCAAAGTGTCTTTCAGACCTCTCAATGGGCGTTGGTGGTGATTCAAAATGTCTTCAGGATAATTCAAAGTGTTTTCATGACCATTCAGTTGCCGATAGTAGGGATTCAAAGTGTCTTCAGAATCTTTCAATTGAAGCCGGTAGTGATACAAATTGTCGTCAGGAACTTTCAGCTGACAATGCTGCTGATTCAAAGTGTTTTCAGGACCTTTCACTTGACTTTGATGGTGATTCAAAGTGTTTCCAGGACCTTTCCATTTGCAATGCTGGTGAAAGGTGTGGCTTAAATGTCACTAGCTATGGGGAAGAGAAATCGTCCTTTGGGTATCCTAAAGTGAAGAACTCAAGGTTCCTTCAATTCTTGAAGCCAGATCCTGTACTCCATGGTTCGATTTATCAGGAGAAGCTACATAGAGAGACTAAAGGGACCACTATTATTGCTTGGGTTTTAAACCAAGCACCTGCTGTAATGGCTGGTTTTGATTCCAGGATCACTAAGCATAATGAACTAGTTTCAGATACATCGGAAAAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

385

Amino Acids

43.16

Weight (kDa)

8.12

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OST-HTH PF12872 105 - 160 5.7e-07 OST-HTH/LOTUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1090
AasI GACNNNNNNGTC 1 cut(s) 510
Acc36I ACCTGC 1 cut(s) 1090
AciI CCGC 1 cut(s) 227
AclWI GGATC 3 cut(s) 417, 986, 1118
AcoI YGGCCR 1 cut(s) 527
AcsI RAATTY 3 cut(s) 121, 392, 1151
AcuI CTGAAG 3 cut(s) 362, 659, 722
AfaI GTAC 2 cut(s) 472, 999
AfiI CCNNNNNNNGG 3 cut(s) 188, 646, 720
AhlI ACTAGT 1 cut(s) 1129
AjnI CCWGG 3 cut(s) 319, 864, 1106
AluBI AGCT 9 cut(s) 77, 136, 251, 267, 377, 436, 794, 918, 1027
AluI AGCT 9 cut(s) 77, 136, 251, 267, 377, 436, 794, 918, 1027
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 1031
AlwI GGATC 3 cut(s) 417, 986, 1118
AlwNI CAGNNNCTG 1 cut(s) 995
AoxI GGCC 2 cut(s) 527, 542
ApeKI GCWGC 1 cut(s) 803
ApoI RAATTY 3 cut(s) 121, 392, 1151
Asp700I GAANNNNTTC 1 cut(s) 455
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 5 cut(s) 274, 503, 826, 868, 1047
AsuHPI GGTGA 7 cut(s) 10, 87, 185, 629, 671, 860, 902
AvaII GGWCC 5 cut(s) 274, 503, 826, 868, 1047
BanII GRGCYC 1 cut(s) 269
BbsI GAAGAC 2 cut(s) 665, 728
Bbv12I GWGCWC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 790
BccI CCATC 1 cut(s) 839
BciT130I CCWGG 3 cut(s) 321, 866, 1108
BciVI GTATCC 1 cut(s) 957
BcoDI GTCTC 1 cut(s) 1031
BcuI ACTAGT 1 cut(s) 1129
BfaI CTAG 2 cut(s) 915, 1130
BfmI CTRYAG 1 cut(s) 143
BfuAI ACCTGC 1 cut(s) 1090
BfuI GTATCC 1 cut(s) 957
BisI GCNGC 2 cut(s) 228, 804
BlsI GCNGC 2 cut(s) 229, 805
Bme1390I CCNGG 3 cut(s) 321, 866, 1108
Bme18I GGWCC 5 cut(s) 274, 503, 826, 868, 1047
BmgT120I GGNCC 5 cut(s) 274, 503, 826, 868, 1047
BmiI GGNNCC 3 cut(s) 276, 971, 1048
BmrFI CCNGG 3 cut(s) 321, 866, 1108
BmrI ACTGGG 1 cut(s) 504
BmuI ACTGGG 1 cut(s) 504
BpiI GAAGAC 2 cut(s) 665, 728
BplI GAGNNNNNCTC 2 cut(s) 470, 502
BpuEI CTTGAG 2 cut(s) 231, 949
BsaJI CCNNGG 2 cut(s) 214, 1003
BsaXI ACNNNNNCTCC 2 cut(s) 540, 570
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 646, 720
Bse118I RCCGGY 1 cut(s) 758
Bse1I ACTGG 2 cut(s) 411, 510
Bse3DI GCAATG 1 cut(s) 889
BseBI CCWGG 3 cut(s) 321, 866, 1108
BseDI CCNNGG 2 cut(s) 214, 1003
BseLI CCNNNNNNNGG 3 cut(s) 188, 646, 720
BseMI GCAATG 1 cut(s) 889
BseMII CTCAG 4 cut(s) 69, 261, 451, 583
BseNI ACTGG 2 cut(s) 411, 510
BseXI GCAGC 1 cut(s) 790
BshFI GGCC 2 cut(s) 529, 544
BsiHKAI GWGCWC 1 cut(s) 269
BsiSI CCGG 2 cut(s) 526, 759
BslFI GGGAC 1 cut(s) 1060
BslI CCNNNNNNNGG 3 cut(s) 188, 646, 720
BsmAI GTCTC 1 cut(s) 1031
BsmFI GGGAC 1 cut(s) 1060
BsnI GGCC 2 cut(s) 529, 544
Bsp1286I GDGCHC 1 cut(s) 269
Bsp143I GATC 4 cut(s) 409, 519, 991, 1110
Bsp19I CCATGG 1 cut(s) 1003
BspACI CCGC 1 cut(s) 227
BspANI GGCC 2 cut(s) 529, 544
BspCNI CTCAG 4 cut(s) 70, 262, 450, 582
BspHI TCATGA 1 cut(s) 697
BspLI GGNNCC 3 cut(s) 276, 971, 1048
BspMAI CTGCAG 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 1090
BspPI GGATC 3 cut(s) 417, 986, 1118
BsrDI GCAATG 1 cut(s) 889
BsrFI RCCGGY 1 cut(s) 758
BsrI ACTGG 2 cut(s) 411, 510
BssAI RCCGGY 1 cut(s) 758
BssECI CCNNGG 2 cut(s) 214, 1003
BssMI GATC 4 cut(s) 409, 519, 991, 1110
BssT1I CCWWGG 2 cut(s) 214, 1003
Bst2UI CCWGG 3 cut(s) 321, 866, 1108
Bst4CI ACNGT 1 cut(s) 475
Bst6I CTCTTC 2 cut(s) 370, 921
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 5 cut(s) 78, 270, 437, 569, 1116
BstDSI CCRYGG 1 cut(s) 1003
BstENI CCTNNNNNAGG 1 cut(s) 186
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 4 cut(s) 412, 522, 994, 1113
BstMAI GTCTC 1 cut(s) 1031
BstMBI GATC 4 cut(s) 409, 519, 991, 1110
BstMWI GCNNNNNNNGC 3 cut(s) 142, 800, 1091
BstNI CCWGG 3 cut(s) 321, 866, 1108
BstNSI RCATGY 1 cut(s) 234
BstSCI CCNGG 3 cut(s) 319, 864, 1106
BstSFI CTRYAG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 790
BstV2I GAAGAC 2 cut(s) 665, 728
BstX2I RGATCY 1 cut(s) 991
BstYI RGATCY 1 cut(s) 991
BsuI GTATCC 1 cut(s) 957
BsuRI GGCC 2 cut(s) 529, 544
BtgI CCRYGG 1 cut(s) 1003
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 2 cut(s) 140, 445
BveI ACCTGC 1 cut(s) 1090
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 995
CciI TCATGA 1 cut(s) 697
CfoI GCGC 1 cut(s) 200
Cfr10I RCCGGY 1 cut(s) 758
Cfr13I GGNCC 5 cut(s) 274, 503, 826, 868, 1047
Csp6I GTAC 2 cut(s) 471, 998
CspCI CAANNNNNGTGG 2 cut(s) 1039, 1074
CviAII CATG 7 cut(s) 22, 231, 254, 291, 517, 698, 1004
CviQI GTAC 2 cut(s) 471, 998
DdeI CTNAG 5 cut(s) 78, 270, 437, 569, 1116
DpnI GATC 4 cut(s) 411, 521, 993, 1112
DpnII GATC 4 cut(s) 409, 519, 991, 1110
DraI TTTAAA 1 cut(s) 1071
DrdI GACNNNNNNGTC 1 cut(s) 510
DseDI GACNNNNNNGTC 1 cut(s) 510
EaeI YGGCCR 1 cut(s) 527
Eam1104I CTCTTC 2 cut(s) 370, 921
EarI CTCTTC 2 cut(s) 370, 921
Ecl136II GAGCTC 1 cut(s) 267
Eco130I CCWWGG 2 cut(s) 214, 1003
Eco147I AGGCCT 1 cut(s) 544
Eco24I GRGCYC 1 cut(s) 269
Eco47I GGWCC 5 cut(s) 274, 503, 826, 868, 1047
Eco53kI GAGCTC 1 cut(s) 267
Eco57I CTGAAG 3 cut(s) 362, 659, 722
EcoICRI GAGCTC 1 cut(s) 267
EcoNI CCTNNNNNAGG 1 cut(s) 186
EcoO109I RGGNCCY 3 cut(s) 274, 826, 868
EcoRII CCWGG 3 cut(s) 319, 864, 1106
EcoT14I CCWWGG 2 cut(s) 214, 1003
EcoT38I GRGCYC 1 cut(s) 269
ErhI CCWWGG 2 cut(s) 214, 1003
FaeI CATG 7 cut(s) 25, 234, 257, 294, 520, 701, 1007
FaqI GGGAC 1 cut(s) 1060
FatI CATG 7 cut(s) 21, 230, 253, 290, 516, 697, 1003
Fnu4HI GCNGC 2 cut(s) 228, 804
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 2 cut(s) 228, 804
FspBI CTAG 2 cut(s) 915, 1130
GlaI GCGC 1 cut(s) 199
GluI GCNGC 2 cut(s) 228, 804
HaeIII GGCC 2 cut(s) 529, 544
HapII CCGG 2 cut(s) 526, 759
HhaI GCGC 1 cut(s) 200
Hin1II CATG 7 cut(s) 25, 234, 257, 294, 520, 701, 1007
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HpaII CCGG 2 cut(s) 526, 759
HphI GGTGA 7 cut(s) 10, 87, 185, 629, 671, 860, 902
Hpy166II GTNNAC 1 cut(s) 503
Hpy188I TCNGA 6 cut(s) 271, 572, 637, 741, 1138, 1147
Hpy188III TCNNGA 8 cut(s) 307, 448, 677, 698, 782, 824, 982, 1019
Hpy8I GTNNAC 1 cut(s) 503
HpyAV CCTTC 3 cut(s) 164, 569, 983
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4IV ACGT 1 cut(s) 499
HpyCH4V TGCA 5 cut(s) 4, 145, 495, 599, 882
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 800, 1091
HpyF3I CTNAG 5 cut(s) 78, 270, 437, 569, 1116
HpySE526I ACGT 1 cut(s) 499
Hsp92II CATG 7 cut(s) 25, 234, 257, 294, 520, 701, 1007
HspAI GCGC 1 cut(s) 198
Kzo9I GATC 4 cut(s) 409, 519, 991, 1110
LmnI GCTCC 1 cut(s) 74
Lsp1109I GCAGC 1 cut(s) 790
MaeI CTAG 2 cut(s) 915, 1130
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 5 cut(s) 93, 256, 440, 512, 910
MalI GATC 4 cut(s) 411, 521, 993, 1112
MboI GATC 4 cut(s) 409, 519, 991, 1110
MboII GAAGA 6 cut(s) 130, 357, 665, 728, 938, 970
MfeI CAATTG 1 cut(s) 750
MflI RGATCY 1 cut(s) 991
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 9 cut(s) 62, 121, 392, 463, 682, 750, 772, 977, 1151
MlyI GAGTC 1 cut(s) 549
MnlI CCTC 7 cut(s) 20, 108, 255, 265, 555, 588, 650
MroXI GAANNNNTTC 1 cut(s) 455
MseI TTAA 3 cut(s) 905, 1070, 1156
MslI CAYNNNNRTG 1 cut(s) 20
MspA1I CMGCKG 2 cut(s) 227, 794
MspI CCGG 2 cut(s) 526, 759
MspR9I CCNGG 3 cut(s) 321, 866, 1108
MunI CAATTG 1 cut(s) 750
MvaI CCWGG 3 cut(s) 321, 866, 1108
MwoI GCNNNNNNNGC 3 cut(s) 142, 800, 1091
NcoI CCATGG 1 cut(s) 1003
NdeII GATC 4 cut(s) 409, 519, 991, 1110
NlaIII CATG 7 cut(s) 25, 234, 257, 294, 520, 701, 1007
NlaIV GGNNCC 3 cut(s) 276, 971, 1048
NmuCI GTSAC 4 cut(s) 93, 440, 512, 910
NspI RCATGY 1 cut(s) 234
PagI TCATGA 1 cut(s) 697
PaqCI CACCTGC 1 cut(s) 1090
PceI AGGCCT 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 455
PfeI GAWTC 9 cut(s) 55, 481, 620, 662, 725, 742, 809, 851, 1103
PfoI TCCNGGA 2 cut(s) 864, 1106
PkrI GCNGC 2 cut(s) 229, 805
PleI GAGTC 1 cut(s) 549
PpsI GAGTC 1 cut(s) 549
PpuMI RGGWCCY 3 cut(s) 274, 826, 868
Psp124BI GAGCTC 1 cut(s) 269
Psp5II RGGWCCY 3 cut(s) 274, 826, 868
Psp6I CCWGG 3 cut(s) 319, 864, 1106
PspGI CCWGG 3 cut(s) 319, 864, 1106
PspN4I GGNNCC 3 cut(s) 276, 971, 1048
PspPI GGNCC 5 cut(s) 274, 503, 826, 868, 1047
PspPPI RGGWCCY 3 cut(s) 274, 826, 868
PsrI GAACNNNNNNTAC 2 cut(s) 565, 597
PstI CTGCAG 1 cut(s) 147
PstNI CAGNNNCTG 1 cut(s) 995
PsuI RGATCY 1 cut(s) 991
PvuII CAGCTG 1 cut(s) 794
RsaI GTAC 2 cut(s) 472, 999
RsaNI GTAC 2 cut(s) 471, 998
RseI CAYNNNNRTG 1 cut(s) 20
SacI GAGCTC 1 cut(s) 269
SaqAI TTAA 3 cut(s) 905, 1070, 1156
SatI GCNGC 2 cut(s) 228, 804
Sau3AI GATC 4 cut(s) 409, 519, 991, 1110
Sau96I GGNCC 5 cut(s) 274, 503, 826, 868, 1047
SchI GAGTC 1 cut(s) 549
ScrFI CCNGG 3 cut(s) 321, 866, 1108
SduI GDGCHC 1 cut(s) 269
SfcI CTRYAG 1 cut(s) 143
SinI GGWCC 5 cut(s) 274, 503, 826, 868, 1047
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 246, 964
SmoI CTYRAG 2 cut(s) 246, 964
SpeI ACTAGT 1 cut(s) 1129
Sse9I AATT 9 cut(s) 62, 121, 392, 463, 682, 750, 772, 977, 1151
SseBI AGGCCT 1 cut(s) 544
SsiI CCGC 1 cut(s) 227
SspMI CTAG 2 cut(s) 915, 1130
SstI GAGCTC 1 cut(s) 269
StuI AGGCCT 1 cut(s) 544
StyD4I CCNGG 3 cut(s) 319, 864, 1106
StyI CCWWGG 2 cut(s) 214, 1003
TaaI ACNGT 1 cut(s) 475
TaiI ACGT 1 cut(s) 502
TaqI TCGA 2 cut(s) 152, 1010
TasI AATT 9 cut(s) 62, 121, 392, 463, 682, 750, 772, 977, 1151
TatI WGTACW 1 cut(s) 997
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 9 cut(s) 55, 481, 620, 662, 725, 742, 809, 851, 1103
Tru1I TTAA 3 cut(s) 905, 1070, 1156
Tru9I TTAA 3 cut(s) 905, 1070, 1156
TscAI CASTG 2 cut(s) 147, 445
TseFI GTSAC 4 cut(s) 93, 440, 512, 910
TseI GCWGC 1 cut(s) 803
Tsp45I GTSAC 4 cut(s) 93, 440, 512, 910
TspDTI ATGAA 4 cut(s) 405, 551, 686, 1140
TspRI CASTG 2 cut(s) 147, 445
VpaK11BI GGWCC 5 cut(s) 274, 503, 826, 868, 1047
XagI CCTNNNNNAGG 1 cut(s) 186
XapI RAATTY 3 cut(s) 121, 392, 1151
XceI RCATGY 1 cut(s) 234
XmnI GAANNNNTTC 1 cut(s) 455
XspI CTAG 2 cut(s) 915, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.