Rw0G009340

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00367
OG0000679
Physical Location & Seq
Forward (+)
27104 .. 32298
5195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009340.1

Sequence Viewer

Length: 3264 bp
ATGGTTCCGGAGCGGTCCGAGTCAGATCCGAGTTCGGCCTGTGACCTCCGACACGATGCGAGTGAAGACCCAATCGACTCGGTCGAGGCCGAGACGAGTCTGATCAATGCCGTCTACCTCGACAGCAAGGCCGAGCTCGTGGCTCAGTCGAAGCGACTCGGCGGCCGGGCGTTAGACCTAGCGACCGCGTCGAAGCTCCTGCATCTCTGCTGCAACTTTGACTCTGTAGAGTGCGCCTCGGCGCTTCTCAGCGGACAGCTCGGAGCGACACCACTCGTGAACGAGTTAGACGAGGCCGGGAAAACGCCGCTACACACGGCGGTGGAGTCTCACGCGTTGCGGTGCGTGGAGGCGTTGCTGAAGAAACACGCTCGTACGGACCTGAGGACGAAGGACGGTGAGGCACAGCTACCGTTGGAGTTGTCGCTTACTGAGGCCAAACCAGTCAAAAACGTGGATTTGAGCATTGTGAGACTTTTGAGTGACAAAACCAAGGAGATCGCTGAGGTGGCTTATTCATACGCTGTTCAAGGGCGCGTAGCTTCTCTGACGGCTCTGCTCATCGTCGCCGCCGAGAAGGTTATCGATTCCGTGTTGGAGTTGCGTAATTCCAAATCGGGGTGCAAGGAGAAGTTCACTATCTACGAATGCCTTATAAGGGAGGCTTTGGCCCTGGGCGGCCATACAACGACGCCGTTGAGGGCGGCCAAAAGGAAGCTCTTGCTCCGGGAGATAGACCTGCTTCAGCTCTTCGGAGCTGTAGTTCAGAGCTGTGGTGGAGACAAGAAGGTGACTTCGCCACTCATCCGTGCAGCTCAGGGAGGAGACGAAGCTGTTATCCAGCTGCTTCTGAAGACAAATATAGATGTCAATGATGCTGATGCAGATGGAAATTCTGCTCTTCATTGGATACTTGCGTCATCGATATTGTCACATCCACAACAGATAAGTATTATATTGCTTCTTCTAGAGCATGGTGCTCTCGTAAGGCAAAGGAATAAAATGGGGTTGACAGCATTTCATATTGCTGCTGGTAATGGTAATTCAAAGGCCCTTGAGATCCTTCTGTTGGAAGACCCGTTAGCTGTCCAATATATGACGGAAATGAAAGAAACCCCCCTCTTTTTCGCTGTGAAGAATGGGAGTAAAGACTGCACTGAGCTTCTTTTAACATGGGGATCAAATAGTGAAGTCCTTAACGTGCGTGGGCAAAAAGCTATAGACCTGGCAACCTCTCAAGATATGCGTGACATACTGCTGAACATAACCACTGTTAGCCTCGTTAATCAGGCCTTCCCCAATCAACATAAATGTACTGCCTTAGAGGTGACAGATGAAGACACCACTACTGAAAGAAATGTTAACTCAATCACCAAGGCAGAAGCTTGTAAGTACTTTGAATCTCATCAAGGATGTGTCAGAGGAGTTCAGGATGGAGCATACCAGAGTCATTCTTATGCTGCGAAACAACTCAAACGCAAAATCTTTGTTGGAGGACTTCCTCCTTCAGTGGACTCTGATGTTTTGGGAAAGTTCTTTGAAGAGTTTGGATCAGTGGAAGATGCTGTAGTTATTGTAACTCAGATAGAAAAGAAGATACAATCTCGAGGCTTTGGTTTTGTCACATTTAGAGAGGAGAAATCTGCTTTAGAAGCCATGCAAGCGAACTACGTTACCATGAGAGGCAAGAAAGTTGAAATAAAAAGTTTGATTCCAAAATTGGTTTTCAGAGCTGAGTTTGAGAAAATGTCACCTCAACAACGAGAACAAGATAAAGATTTTCAACTTCCACTGCAGAAGTCGAACGAGTATATTAGGGAAGGTGATAACCCTGAACAAGGTTCTTGTGCTGATAGATTAGTCCTTGGACAACCAGCGGCATGTTCCATTGAACATCAAGCTCATGTGACCAACAGCTCTGAGGACCCAAGCACTCCTACATGGCTAAAGGTTTTCAAGAAGTGGTTTCCTGGGTTCTTACAAGGTCTCCTGAAGCACTCAAAGTATGCTCTCTCTTCTCTAAAAGCTGATTTCAGGGTTAAATTTGGGTTAGAACTGGATCATTCATCTGTGGGCTACTCTAAGCTCAGTGACTTCCTGAAATGTTTCTCCGATTTATGTACCGTTGAGATTCTCTCCATATGCAAACGTAGACCACCTAGTCACATGATCATCCGGCCAAATTTTTTTAGGCCTCCACGCCGACTCCTTCATACACTCAGAACACCTCATACTCTGTCATTTTTTGCATTGATTGAGAATGGTGGTGATTCAAAGTGTCTTTCAGACCTCTCAATGGGCATTGGTGGTGAATATTCAAAATGTCTTCAGGATCATTCAAAGTGTTTTCATGACCATTCAGTTGCCGATAGTACTGATTCAAAGTGTCTTCAGAATCTTTCAATTGCAGCGGGTAGTGATACAAATTGTCGTCAGGAACTTTCAGCTGACAATGCTGCTGATTCAAGGTGTATTCAGGACCTTTCACTGGACTTTGGTGGTGATTCAAAGTGTATCCAGGACCTTTCCATTTGCAATGCTTGTGAAAGGTGTGGCTTAAATGTCACTAGCTATGGGGAAGAGAAATCGTCCTTTGGGTACACTAAAGTGAAGAACTCAAGGTTCCTTCAATTCTTGAAGCCAGATCCTGTACTCCATGGTCCGATTTATCAGGAGAAGCTACATAGAGAGACTAAAGGGACTACTATTATTGCTTGGGTTTTAGACCAAGCACCTGCTGTAATGGCTGTTTCAGATACATCGAAAAAATTTGAAATCATTAGTCCAAAGATACTCGCATTAGGTGCAGGAAGCTATTATGATATTAAGAAGACATTTAATATTATGAAGTACTGCATTCCAAACAAGATTATGAGACATCCTGAAGTCATATTTAAGCTAGGAGAGTATGCTCGTGATAGGCCGGTGAGAAAGAATGTTGATTTGTATACCTGTTTTATTCTTGGTGTGCAGTCTGAGGAACCAACCCTTTATCGACTTGACAGTGACCTTGATCCTCCTTTAGAGAAATGTGATGGTGTAGAATTAATTGGCACCGGGGATCTAGCGGCTTATGAAGCATTGACAGAAGAAACGGAGGAACCTGTGGAAGGTTTTCATGTAGAAGACACACATAGAAAAGTTAAATATGCATTTCTTAAGGCAGCTCTAACCGATCCCTCTACCGGTGGTATTATAACTGGTAAATATTGCTTTTTTCTCTGCTTTTTAATTTATATTGTTTTGGAGTGTTTGTCAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

1087

Amino Acids

120.09

Weight (kDa)

5.97

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 64 - 127 1.1e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 260 - 331 3.7e-06 Ankyrin repeats (3 copies)
Ank_2 PF12796 268 - 356 9.4e-10 Ankyrin repeats (3 copies)
Ank_2 PF12796 316 - 394 4.5e-10 Ankyrin repeats (3 copies)
Ank_2 PF12796 340 - 418 6e-07 Ankyrin repeats (3 copies)
RRM_1 PF00076 495 - 565 9.5e-14 RNA recognition motif
OST-HTH PF12872 655 - 710 2.2e-07 OST-HTH/LOTUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 656, 3197
AarI CACCTGC 1 cut(s) 2743
AasI GACNNNNNNGTC 1 cut(s) 2160
Acc36I ACCTGC 2 cut(s) 747, 2743
AccB1I GGYRCC 1 cut(s) 3053
AccBSI CCGCTC 1 cut(s) 13
AccI GTMKAC 3 cut(s) 114, 2152, 2948
AccII CGCG 3 cut(s) 188, 335, 537
AccIII TCCGGA 1 cut(s) 7
AcoI YGGCCR 4 cut(s) 163, 679, 705, 2177
AcsI RAATTY 4 cut(s) 892, 2042, 2182, 2768
AcuI CTGAAG 8 cut(s) 380, 728, 872, 1491, 2012, 2312, 2375, 2904
AcyI GRCGYC 1 cut(s) 692
AfaI GTAC 8 cut(s) 376, 1315, 1394, 2122, 2374, 2600, 2652, 2852
AfiI CCNNNNNNNGG 8 cut(s) 618, 658, 1069, 1838, 2296, 2488, 3110, 3185
AflII CTTAAG 1 cut(s) 3158
AflIII ACRYGT 1 cut(s) 333
AgeI ACCGGT 1 cut(s) 3185
AjnI CCWGG 4 cut(s) 672, 1224, 1969, 2517
AleI CACNNNNGTG 2 cut(s) 320, 2606
AloI GAACNNNNNNTCC 2 cut(s) 747, 779
Alw21I GWGCWC 2 cut(s) 138, 982
Alw26I GTCTC 8 cut(s) 86, 333, 466, 774, 819, 1991, 2684, 2869
AlwNI CAGNNNCTG 1 cut(s) 2648
Ama87I CYCGRG 1 cut(s) 1605
Aor13HI TCCGGA 1 cut(s) 7
ApeKI GCWGC 8 cut(s) 210, 812, 844, 1028, 1460, 2408, 2456, 3164
ApoI RAATTY 4 cut(s) 892, 2042, 2182, 2768
AseI ATTAAT 1 cut(s) 3047
AsiGI ACCGGT 1 cut(s) 3185
Asp700I GAANNNNTTC 2 cut(s) 2105, 3114
AspLEI GCGC 3 cut(s) 236, 244, 537
AspS9I GGNCC 8 cut(s) 15, 379, 670, 1051, 1924, 2479, 2521, 2660
AsuC2I CCSGG 4 cut(s) 167, 298, 728, 3058
AvaI CYCGRG 1 cut(s) 1605
AvaII GGWCC 6 cut(s) 15, 379, 1924, 2479, 2521, 2660
AxyI CCTNAGG 1 cut(s) 383
BaeI ACNNNNGTAYC 2 cut(s) 902, 935
BanI GGYRCC 1 cut(s) 3053
BanII GRGCYC 1 cut(s) 138
BauI CACGAG 3 cut(s) 137, 275, 2913
BbsI GAAGAC 8 cut(s) 72, 860, 1080, 1344, 2318, 2381, 2837, 3132
Bbv12I GWGCWC 2 cut(s) 138, 982
BbvCI CCTCAGC 1 cut(s) 504
BbvI GCAGC 8 cut(s) 197, 824, 831, 1015, 1447, 2420, 2443, 3176
BccI CCATC 3 cut(s) 881, 1427, 3029
BceAI ACGGC 4 cut(s) 95, 333, 567, 679
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BciT130I CCWGG 4 cut(s) 674, 1226, 1971, 2519
BciVI GTATCC 2 cut(s) 903, 2525
BclI TGATCA 2 cut(s) 102, 2169
BcnI CCSGG 4 cut(s) 167, 298, 728, 3058
BcoDI GTCTC 8 cut(s) 86, 333, 466, 774, 819, 1991, 2684, 2869
BfaI CTAG 7 cut(s) 179, 968, 2160, 2568, 2900, 3065, 3262
BfmI CTRYAG 5 cut(s) 225, 759, 1218, 1566, 1793
BfoI RGCGCY 1 cut(s) 245
BfrI CTTAAG 1 cut(s) 3158
BfuAI ACCTGC 2 cut(s) 747, 2743
BfuI GTATCC 2 cut(s) 903, 2525
BmcAI AGTACT 3 cut(s) 1394, 2374, 2852
Bme1390I CCNGG 8 cut(s) 167, 298, 674, 728, 1226, 1971, 2519, 3058
Bme18I GGWCC 6 cut(s) 15, 379, 1924, 2479, 2521, 2660
BmeT110I CYCGRG 1 cut(s) 1605
BmgT120I GGNCC 8 cut(s) 15, 379, 670, 1051, 1924, 2479, 2521, 2660
BmiI GGNNCC 6 cut(s) 6, 1926, 2624, 2982, 3055, 3102
BmrFI CCNGG 8 cut(s) 167, 298, 674, 728, 1226, 1971, 2519, 3058
BmsI GCATC 5 cut(s) 46, 211, 865, 871, 1552
BpiI GAAGAC 8 cut(s) 72, 860, 1080, 1344, 2318, 2381, 2837, 3132
BplI GAGNNNNNCTC 4 cut(s) 221, 253, 2120, 2152
Bpu10I CCTNAGC 2 cut(s) 504, 816
BpuEI CTTGAG 3 cut(s) 1076, 1221, 2602
BpuMI CCSGG 4 cut(s) 167, 298, 728, 3058
Bsa29I ATCGAT 2 cut(s) 585, 923
BsaHI GRCGYC 1 cut(s) 692
BsaI GGTCTC 1 cut(s) 1991
BsaJI CCNNGG 9 cut(s) 237, 492, 672, 673, 1374, 1864, 1970, 2656, 3057
BsaWI WCCGGW 2 cut(s) 7, 3185
BsaXI ACNNNNNCTCC 7 cut(s) 747, 777, 1971, 2001, 2190, 2220, 3239
Bsc4I CCNNNNNNNGG 8 cut(s) 618, 658, 1069, 1838, 2296, 2488, 3110, 3185
Bse118I RCCGGY 2 cut(s) 2923, 3185
Bse1I ACTGG 4 cut(s) 443, 2061, 2493, 3205
Bse21I CCTNAGG 1 cut(s) 383
Bse3DI GCAATG 1 cut(s) 2542
BseAI TCCGGA 1 cut(s) 7
BseBI CCWGG 4 cut(s) 674, 1226, 1971, 2519
BseCI ATCGAT 2 cut(s) 585, 923
BseDI CCNNGG 9 cut(s) 237, 492, 672, 673, 1374, 1864, 1970, 2656, 3057
BseGI GGATG 6 cut(s) 804, 934, 1418, 1438, 2172, 2878
BseLI CCNNNNNNNGG 8 cut(s) 618, 658, 1069, 1838, 2296, 2488, 3110, 3185
BseMI GCAATG 1 cut(s) 2542
BseNI ACTGG 4 cut(s) 443, 2061, 2493, 3205
BseRI GAGGAG 3 cut(s) 837, 1437, 1649
BseX3I CGGCCG 1 cut(s) 163
BseXI GCAGC 8 cut(s) 197, 824, 831, 1015, 1447, 2420, 2443, 3176
BsgI GTGCAG 4 cut(s) 831, 1138, 2826, 2990
Bsh1236I CGCG 3 cut(s) 188, 335, 537
Bsh1285I CGRYCG 3 cut(s) 84, 166, 186
BshNI GGYRCC 1 cut(s) 3053
BshTI ACCGGT 1 cut(s) 3185
BshVI ATCGAT 2 cut(s) 585, 923
BsiEI CGRYCG 3 cut(s) 84, 166, 186
BsiHKAI GWGCWC 2 cut(s) 138, 982
BsiHKCI CYCGRG 1 cut(s) 1605
BsiSI CCGG 8 cut(s) 8, 166, 297, 727, 2176, 2924, 3057, 3186
BsiWI CGTACG 1 cut(s) 374
BslFI GGGAC 1 cut(s) 2713
BslI CCNNNNNNNGG 8 cut(s) 618, 658, 1069, 1838, 2296, 2488, 3110, 3185
BsmAI GTCTC 8 cut(s) 86, 333, 466, 774, 819, 1991, 2684, 2869
BsmBI CGTCTC 2 cut(s) 86, 819
BsmFI GGGAC 1 cut(s) 2713
BsmI GAATGC 2 cut(s) 653, 2856
Bso31I GGTCTC 1 cut(s) 1991
BsoBI CYCGRG 1 cut(s) 1605
Bsp1286I GDGCHC 2 cut(s) 138, 982
Bsp13I TCCGGA 1 cut(s) 7
Bsp19I CCATGG 1 cut(s) 2656
BspDI ATCGAT 2 cut(s) 585, 923
BspEI TCCGGA 1 cut(s) 7
BspFNI CGCG 3 cut(s) 188, 335, 537
BspHI TCATGA 1 cut(s) 2350
BspLI GGNNCC 6 cut(s) 6, 1926, 2624, 2982, 3055, 3102
BspMAI CTGCAG 1 cut(s) 1797
BspMI ACCTGC 2 cut(s) 747, 2743
BspQI GCTCTTC 2 cut(s) 755, 906
BspT107I GGYRCC 1 cut(s) 3053
BspTI CTTAAG 1 cut(s) 3158
BspTNI GGTCTC 1 cut(s) 1991
BsrBI CCGCTC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 2542
BsrFI RCCGGY 2 cut(s) 2923, 3185
BsrI ACTGG 4 cut(s) 443, 2061, 2493, 3205
BssAI RCCGGY 2 cut(s) 2923, 3185
BssECI CCNNGG 9 cut(s) 237, 492, 672, 673, 1374, 1864, 1970, 2656, 3057
BssNAI GTATAC 1 cut(s) 2949
BssNI GRCGYC 1 cut(s) 692
BssSI CACGAG 3 cut(s) 137, 275, 2913
BssT1I CCWWGG 4 cut(s) 492, 1374, 1864, 2656
Bst1107I GTATAC 1 cut(s) 2949
Bst2BI CACGAG 3 cut(s) 137, 275, 2913
Bst2UI CCWGG 4 cut(s) 674, 1226, 1971, 2519
Bst4CI ACNGT 5 cut(s) 398, 414, 1273, 2125, 3005
Bst6I CTCTTC 5 cut(s) 755, 906, 1536, 2020, 2574
BstACI GRCGYC 1 cut(s) 692
BstAFI CTTAAG 1 cut(s) 3158
BstAPI GCANNNNNTGC 1 cut(s) 2804
BstC8I GCNNGC 1 cut(s) 1662
BstDSI CCRYGG 1 cut(s) 2656
BstENI CCTNNNNNAGG 2 cut(s) 1836, 3108
BstF5I GGATG 6 cut(s) 804, 934, 1418, 1438, 2172, 2878
BstFNI CGCG 3 cut(s) 188, 335, 537
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 3 cut(s) 236, 244, 537
BstMAI GTCTC 8 cut(s) 86, 333, 466, 774, 819, 1991, 2684, 2869
BstMCI CGRYCG 3 cut(s) 84, 166, 186
BstMWI GCNNNNNNNGC 7 cut(s) 509, 1652, 1661, 2453, 2744, 2804, 3077
BstNI CCWGG 4 cut(s) 674, 1226, 1971, 2519
BstNSI RCATGY 1 cut(s) 1884
BstSCI CCNGG 8 cut(s) 165, 296, 672, 726, 1224, 1969, 2517, 3056
BstSFI CTRYAG 5 cut(s) 225, 759, 1218, 1566, 1793
BstUI CGCG 3 cut(s) 188, 335, 537
BstV1I GCAGC 8 cut(s) 197, 824, 831, 1015, 1447, 2420, 2443, 3176
BstV2I GAAGAC 8 cut(s) 72, 860, 1080, 1344, 2318, 2381, 2837, 3132
BstX2I RGATCY 4 cut(s) 25, 1059, 2644, 3061
BstYI RGATCY 4 cut(s) 25, 1059, 2644, 3061
BstZ17I GTATAC 1 cut(s) 2949
BstZI CGGCCG 1 cut(s) 163
Bsu15I ATCGAT 2 cut(s) 585, 923
Bsu36I CCTNAGG 1 cut(s) 383
BsuI GTATCC 2 cut(s) 903, 2525
BsuTUI ATCGAT 2 cut(s) 585, 923
BtgI CCRYGG 1 cut(s) 2656
BtsCI GGATG 6 cut(s) 804, 934, 1418, 1438, 2172, 2878
BtsI GCAGTG 1 cut(s) 1790
BtsIMutI CAGTG 8 cut(s) 1155, 1269, 1515, 1560, 1790, 2095, 2486, 3010
BveI ACCTGC 2 cut(s) 747, 2743
Cac8I GCNNGC 1 cut(s) 1662
CaiI CAGNNNCTG 1 cut(s) 2648
CciI TCATGA 1 cut(s) 2350
CfoI GCGC 3 cut(s) 236, 244, 537
Cfr10I RCCGGY 2 cut(s) 2923, 3185
Cfr13I GGNCC 8 cut(s) 15, 379, 670, 1051, 1924, 2479, 2521, 2660
ClaI ATCGAT 2 cut(s) 585, 923
CpoI CGGWCCG 1 cut(s) 15
CseI GACGC 3 cut(s) 177, 700, 906
Csp6I GTAC 8 cut(s) 375, 1314, 1393, 2121, 2373, 2599, 2651, 2851
CspAI ACCGGT 1 cut(s) 3185
CspI CGGWCCG 1 cut(s) 15
CviQI GTAC 8 cut(s) 375, 1314, 1393, 2121, 2373, 2599, 2651, 2851
DrdI GACNNNNNNGTC 1 cut(s) 2160
DseDI GACNNNNNNGTC 1 cut(s) 2160
EaeI YGGCCR 4 cut(s) 163, 679, 705, 2177
EagI CGGCCG 1 cut(s) 163
Eam1104I CTCTTC 5 cut(s) 755, 906, 1536, 2020, 2574
EarI CTCTTC 5 cut(s) 755, 906, 1536, 2020, 2574
Ecl136II GAGCTC 1 cut(s) 136
EclXI CGGCCG 1 cut(s) 163
Eco130I CCWWGG 4 cut(s) 492, 1374, 1864, 2656
Eco147I AGGCCT 2 cut(s) 1292, 2194
Eco24I GRGCYC 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 1991
Eco47I GGWCC 6 cut(s) 15, 379, 1924, 2479, 2521, 2660
Eco52I CGGCCG 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 8 cut(s) 380, 728, 872, 1491, 2012, 2312, 2375, 2904
Eco81I CCTNAGG 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 1605
EcoICRI GAGCTC 1 cut(s) 136
EcoNI CCTNNNNNAGG 2 cut(s) 1836, 3108
EcoO109I RGGNCCY 4 cut(s) 1051, 1924, 2479, 2521
EcoRII CCWGG 4 cut(s) 672, 1224, 1969, 2517
EcoT14I CCWWGG 4 cut(s) 492, 1374, 1864, 2656
EcoT22I ATGCAT 1 cut(s) 3154
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 4 cut(s) 492, 1374, 1864, 2656
Esp3I CGTCTC 2 cut(s) 86, 819
FalI AAGNNNNNCTT 2 cut(s) 649, 681
FaqI GGGAC 1 cut(s) 2713
FauI CCCGC 1 cut(s) 2404
FauNDI CATATG 1 cut(s) 2141
FbaI TGATCA 2 cut(s) 102, 2169
FblI GTMKAC 3 cut(s) 114, 2152, 2948
FokI GGATG 6 cut(s) 791, 921, 1425, 1445, 2159, 2865
FriOI GRGCYC 1 cut(s) 138
FspBI CTAG 7 cut(s) 179, 968, 2160, 2568, 2900, 3065, 3262
GlaI GCGC 3 cut(s) 235, 243, 536
HaeII RGCGCY 1 cut(s) 245
HapII CCGG 8 cut(s) 8, 166, 297, 727, 2176, 2924, 3057, 3186
HgaI GACGC 3 cut(s) 177, 700, 906
HhaI GCGC 3 cut(s) 236, 244, 537
Hin1I GRCGYC 1 cut(s) 692
Hin6I GCGC 3 cut(s) 234, 242, 535
HinP1I GCGC 3 cut(s) 234, 242, 535
HincII GTYRAC 2 cut(s) 1011, 1363
HindII GTYRAC 2 cut(s) 1011, 1363
HindIII AAGCTT 1 cut(s) 1383
HpaI GTTAAC 1 cut(s) 1363
HpaII CCGG 8 cut(s) 8, 166, 297, 727, 2176, 2924, 3057, 3186
Hpy166II GTNNAC 9 cut(s) 115, 280, 636, 1011, 1363, 1513, 2153, 2601, 2949
Hpy8I GTNNAC 9 cut(s) 115, 280, 636, 1011, 1363, 1513, 2153, 2601, 2949
Hpy99I CGWCG 3 cut(s) 193, 569, 694
HpyCH4III ACNGT 5 cut(s) 398, 414, 1273, 2125, 3005
HpyCH4IV ACGT 4 cut(s) 453, 1200, 1671, 2149
HpyF10VI GCNNNNNNNGC 7 cut(s) 509, 1652, 1661, 2453, 2744, 2804, 3077
HpySE526I ACGT 4 cut(s) 453, 1200, 1671, 2149
Hsp92I GRCGYC 1 cut(s) 692
HspAI GCGC 3 cut(s) 234, 242, 535
Kpn2I TCCGGA 1 cut(s) 7
Ksp22I TGATCA 2 cut(s) 102, 2169
KspAI GTTAAC 1 cut(s) 1363
LguI GCTCTTC 2 cut(s) 755, 906
LmnI GCTCC 6 cut(s) 10, 201, 263, 729, 755, 1436
Lsp1109I GCAGC 8 cut(s) 197, 824, 831, 1015, 1447, 2420, 2443, 3176
LweI GCATC 5 cut(s) 46, 211, 865, 871, 1552
MaeI CTAG 7 cut(s) 179, 968, 2160, 2568, 2900, 3065, 3262
MaeII ACGT 4 cut(s) 453, 1200, 1671, 2149
MbiI CCGCTC 1 cut(s) 13
MfeI CAATTG 1 cut(s) 2403
MflI RGATCY 4 cut(s) 25, 1059, 2644, 3061
MhlI GDGCHC 2 cut(s) 138, 982
MluI ACGCGT 1 cut(s) 333
MlyI GAGTC 9 cut(s) 29, 71, 106, 150, 215, 335, 1456, 1508, 2199
MmeI TCCRAC 5 cut(s) 73, 396, 576, 1050, 1471
Mph1103I ATGCAT 1 cut(s) 3154
MroI TCCGGA 1 cut(s) 7
MroXI GAANNNNTTC 2 cut(s) 2105, 3114
MslI CAYNNNNRTG 3 cut(s) 320, 1455, 2606
MspA1I CMGCKG 5 cut(s) 252, 844, 1877, 2411, 2447
MspCI CTTAAG 1 cut(s) 3158
MspI CCGG 8 cut(s) 8, 166, 297, 727, 2176, 2924, 3057, 3186
MspR9I CCNGG 8 cut(s) 167, 298, 674, 728, 1226, 1971, 2519, 3058
MunI CAATTG 1 cut(s) 2403
Mva1269I GAATGC 2 cut(s) 653, 2856
MvaI CCWGG 4 cut(s) 674, 1226, 1971, 2519
MvnI CGCG 3 cut(s) 188, 335, 537
MwoI GCNNNNNNNGC 7 cut(s) 509, 1652, 1661, 2453, 2744, 2804, 3077
NciI CCSGG 4 cut(s) 167, 298, 728, 3058
NcoI CCATGG 1 cut(s) 2656
NdeI CATATG 1 cut(s) 2141
NlaIV GGNNCC 6 cut(s) 6, 1926, 2624, 2982, 3055, 3102
NmeAIII GCCGAG 5 cut(s) 115, 138, 157, 218, 598
NsiI ATGCAT 1 cut(s) 3154
NspI RCATGY 1 cut(s) 1884
OliI CACNNNNGTG 2 cut(s) 320, 2606
PaeR7I CTCGAG 1 cut(s) 1605
PagI TCATGA 1 cut(s) 2350
PaqCI CACCTGC 1 cut(s) 2743
PasI CCCWGGG 1 cut(s) 673
PceI AGGCCT 2 cut(s) 1292, 2194
PciSI GCTCTTC 2 cut(s) 755, 906
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 288, 570
PctI GAATGC 2 cut(s) 653, 2856
PdmI GAANNNNTTC 2 cut(s) 2105, 3114
PfeI GAWTC 9 cut(s) 587, 1400, 1711, 2131, 2270, 2378, 2395, 2462, 2504
Pfl23II CGTACG 1 cut(s) 374
PflFI GACNNNGTC 2 cut(s) 80, 187
PfoI TCCNGGA 2 cut(s) 726, 2517
PinAI ACCGGT 1 cut(s) 3185
PleI GAGTC 9 cut(s) 28, 71, 105, 150, 215, 334, 1455, 1508, 2199
PpsI GAGTC 9 cut(s) 28, 71, 105, 150, 215, 334, 1455, 1508, 2199
PpuMI RGGWCCY 3 cut(s) 1924, 2479, 2521
PshBI ATTAAT 1 cut(s) 3047
PsiI TTATAA 2 cut(s) 656, 3197
Psp124BI GAGCTC 1 cut(s) 138
Psp5II RGGWCCY 3 cut(s) 1924, 2479, 2521
Psp6I CCWGG 4 cut(s) 672, 1224, 1969, 2517
PspGI CCWGG 4 cut(s) 672, 1224, 1969, 2517
PspLI CGTACG 1 cut(s) 374
PspN4I GGNNCC 6 cut(s) 6, 1926, 2624, 2982, 3055, 3102
PspPI GGNCC 8 cut(s) 15, 379, 670, 1051, 1924, 2479, 2521, 2660
PspPPI RGGWCCY 3 cut(s) 1924, 2479, 2521
PsrI GAACNNNNNNTAC 2 cut(s) 2215, 2247
PstI CTGCAG 1 cut(s) 1797
PstNI CAGNNNCTG 1 cut(s) 2648
PsuI RGATCY 4 cut(s) 25, 1059, 2644, 3061
PsyI GACNNNGTC 2 cut(s) 80, 187
PvuII CAGCTG 2 cut(s) 844, 2447
RsaI GTAC 8 cut(s) 376, 1315, 1394, 2122, 2374, 2600, 2652, 2852
RsaNI GTAC 8 cut(s) 375, 1314, 1393, 2121, 2373, 2599, 2651, 2851
RseI CAYNNNNRTG 3 cut(s) 320, 1455, 2606
Rsr2I CGGWCCG 1 cut(s) 15
RsrII CGGWCCG 1 cut(s) 15
SacI GAGCTC 1 cut(s) 138
SapI GCTCTTC 2 cut(s) 755, 906
Sau96I GGNCC 8 cut(s) 15, 379, 670, 1051, 1924, 2479, 2521, 2660
ScaI AGTACT 3 cut(s) 1394, 2374, 2852
SchI GAGTC 9 cut(s) 29, 71, 106, 150, 215, 335, 1456, 1508, 2199
ScrFI CCNGG 8 cut(s) 167, 298, 674, 728, 1226, 1971, 2519, 3058
SduI GDGCHC 2 cut(s) 138, 982
SfaNI GCATC 5 cut(s) 46, 211, 865, 871, 1552
SfcI CTRYAG 5 cut(s) 225, 759, 1218, 1566, 1793
Sfr274I CTCGAG 1 cut(s) 1605
SinI GGWCC 6 cut(s) 15, 379, 1924, 2479, 2521, 2660
SlaI CTCGAG 1 cut(s) 1605
SmiMI CAYNNNNRTG 3 cut(s) 320, 1455, 2606
SmlI CTYRAG 5 cut(s) 1055, 1236, 1605, 2617, 3158
SmoI CTYRAG 5 cut(s) 1055, 1236, 1605, 2617, 3158
SseBI AGGCCT 2 cut(s) 1292, 2194
SspI AATATT 3 cut(s) 2315, 2842, 3209
SspMI CTAG 7 cut(s) 179, 968, 2160, 2568, 2900, 3065, 3262
SstI GAGCTC 1 cut(s) 138
StuI AGGCCT 2 cut(s) 1292, 2194
StyD4I CCNGG 8 cut(s) 165, 296, 672, 726, 1224, 1969, 2517, 3056
StyI CCWWGG 4 cut(s) 492, 1374, 1864, 2656
TaaI ACNGT 5 cut(s) 398, 414, 1273, 2125, 3005
TaiI ACGT 4 cut(s) 456, 1203, 1674, 2152
TaqII GACCGA 1 cut(s) 70
TatI WGTACW 5 cut(s) 1313, 1392, 2372, 2650, 2850
TauI GCSGC 7 cut(s) 165, 310, 572, 681, 707, 1880, 3071
TfiI GAWTC 9 cut(s) 587, 1400, 1711, 2131, 2270, 2378, 2395, 2462, 2504
TscAI CASTG 8 cut(s) 1162, 1276, 1515, 1560, 1797, 2095, 2493, 3010
TseI GCWGC 8 cut(s) 210, 812, 844, 1028, 1460, 2408, 2456, 3164
TspGWI ACGGA 5 cut(s) 392, 580, 797, 1115, 3110
TspRI CASTG 8 cut(s) 1162, 1276, 1515, 1560, 1797, 2095, 2493, 3010
Tth111I GACNNNGTC 2 cut(s) 80, 187
Vha464I CTTAAG 1 cut(s) 3158
VpaK11BI GGWCC 6 cut(s) 15, 379, 1924, 2479, 2521, 2660
VspI ATTAAT 1 cut(s) 3047
XagI CCTNNNNNAGG 2 cut(s) 1836, 3108
XapI RAATTY 4 cut(s) 892, 2042, 2182, 2768
XbaI TCTAGA 1 cut(s) 967
XceI RCATGY 1 cut(s) 1884
XhoI CTCGAG 1 cut(s) 1605
XmiI GTMKAC 3 cut(s) 114, 2152, 2948
XmnI GAANNNNTTC 2 cut(s) 2105, 3114
XspI CTAG 7 cut(s) 179, 968, 2160, 2568, 2900, 3065, 3262
ZrmI AGTACT 3 cut(s) 1394, 2374, 2852
Zsp2I ATGCAT 1 cut(s) 3154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.