Rh2DG640900

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000679
Physical Location & Seq
Forward (+)
86835439 .. 86847817
12379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG640900.1

Sequence Viewer

Length: 1530 bp
ATGAAAAACTTCTCCTCTAATTCAATTGTCTATGTATCTTTTCAGTATTGGTCTTCAGAGCCTGCCTCATTAGTTGAAGGTTTGAACGCTAACATTTATTTTGTACATGAATTTATGGAATACTGTCCAAATACCAGTACGCAAAGAGCTATAGACCTGGCAACCTCTCAAGAGATGCGTTACATATTGCTGAATCCAACCACTATTAGCCTTAATGCTTTGAGAAAGCTCTGTGAAGAAGAGTTTGGATCAGTGGAAGATGCTGTAGTCATTGTAACTCAAATAGAAAACAAGATACAATCTCGAGGCTTTGGTTTTGTCACATTTAGAGGGGAGAAATCTGCTTCAGAAGCCATGCTAGCGCGCTACATCACCTTGAGAGGCAAGAAAGTTGAAATAAAAAGTTTGATTCCAAAATTGGTTTTGGGAGCTGACCTTGAGAAAATGTCACCTCAACCACAAGATCAAGAGAAGAGTTTTCAATACCAGCTTCCACTGCAGAAGCCGAACGAGAATATTGTGGAAGGTGATAACCCTGAACAAAGTTCTTGGGCTGATAGATTAGTCCTTAAACAACCAGCAGATTGTTCCATTGAACCTCAAGCACATGTTACCAAGAGCTCTGAGGACCCAAGCACTCCTACATGGCTAAAGGTTTTCAACAAGTGGTTTCCTGGGATCTTACAAGTAAGTAAACGTGCCCTTATTGTGAATGGTGGTGATTCAAAGTGTCTTTCATCCCTCTTAAGTGGCAATGGTGGTGATTTAAAGGATCTTCAGAACCTTTCAACTGACAGCGGTAGTGATGAGAAGTGTCTCCAGGACCTTCCAACTAACAATGCTATTGATTCAAAGTGCCTTCAGGACCTTTCACTTGATTCTGGTGGTGATTCAGAGTGTGTTGGAGACGAAATGTATGGCTCAAGTGTCACTAGCCATGGGGAAGAGAAACCCTCATCTGGGTATCCTGAAATGAACTCTAAACAGGATAAAGCACACTGTTTGCACCCAAGGTTCCTTCAATTCTTGAAGCTAGATCCTCTACTCCATGGTCAGAATGATATTGATGTGCTTGCTGGAGAGAGTGACAATGAAAAAGGACAGTGCAATGCAGGAGATAAGAATACAAGCGAATCATATTTCCTTCATGAATCTGATTCTTGCAAGGTTAAAGGCATTACAAACATTGCATGGGTTTCAAAAGAGTGTGTAGTCCTTGCCACTGATTCTCGTGGTACTTGCAAAAAGAGTTTAGGCGTCGTTGGTCAGTCAATGGAGAGGGATCCTGATGCCGGTGGTACCATGTTCCTTATTGCTGGATTACAATCAGAGTTATATATTTACTTCTATAATATCAATATCCGTTTACCTCGGATTGAAGAAGAGGATGGATTGAGTGAAGATAAGTCTGACTTTATAGAGTTGGTTACGTTGAAAGAATTGGAAGGAAAAGTTGTATTTTTGTTCTATCATCCTCAAGCTGTTGGTAGAGATGTTATGACCAAATGGCTGAGGTATGTATTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

509

Amino Acids

56.68

Weight (kDa)

4.9

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 66 - 130 1.1e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1298
AccB1I GGYRCC 1 cut(s) 1298
AccII CGCG 1 cut(s) 364
AciI CCGC 1 cut(s) 798
AclWI GGATC 6 cut(s) 256, 686, 780, 1031, 1277, 1290
AcsI RAATTY 1 cut(s) 110
AcuI CTGAAG 4 cut(s) 39, 330, 761, 845
AcyI GRCGYC 1 cut(s) 1257
AfaI GTAC 4 cut(s) 105, 139, 1237, 1300
AfiI CCNNNNNNNGG 3 cut(s) 959, 960, 1292
AflII CTTAAG 1 cut(s) 745
AflIII ACRYGT 1 cut(s) 607
AjnI CCWGG 3 cut(s) 156, 673, 819
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
AluBI AGCT 7 cut(s) 149, 229, 431, 490, 621, 1033, 1481
AluI AGCT 7 cut(s) 149, 229, 431, 490, 621, 1033, 1481
Alw21I GWGCWC 1 cut(s) 623
Alw26I GTCTC 2 cut(s) 821, 900
AlwI GGATC 6 cut(s) 256, 686, 780, 1031, 1277, 1290
AlwNI CAGNNNCTG 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 303
ApoI RAATTY 1 cut(s) 110
Asp700I GAANNNNTTC 1 cut(s) 8
Asp718I GGTACC 1 cut(s) 1298
AspLEI GCGC 2 cut(s) 364, 366
AspS9I GGNCC 3 cut(s) 628, 823, 865
AsuHPI GGTGA 6 cut(s) 364, 441, 539, 731, 773, 899
AsuNHI GCTAGC 1 cut(s) 358
AvaI CYCGRG 1 cut(s) 303
AvaII GGWCC 3 cut(s) 628, 823, 865
BaeGI GKGCMC 1 cut(s) 703
BamHI GGATCC 1 cut(s) 1282
BanI GGYRCC 1 cut(s) 1298
BanII GRGCYC 1 cut(s) 623
BauI CACGAG 1 cut(s) 1230
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 623
BbvCI CCTCAGC 1 cut(s) 1511
BccI CCATC 1 cut(s) 1382
BciT130I CCWGG 3 cut(s) 158, 675, 821
BciVI GTATCC 1 cut(s) 975
BcoDI GTCTC 2 cut(s) 821, 900
BfaI CTAG 3 cut(s) 359, 933, 1034
BfmI CTRYAG 3 cut(s) 150, 264, 497
BfrI CTTAAG 1 cut(s) 745
BfuI GTATCC 1 cut(s) 975
Bme1390I CCNGG 3 cut(s) 158, 675, 821
Bme18I GGWCC 3 cut(s) 628, 823, 865
BmeT110I CYCGRG 1 cut(s) 303
BmgT120I GGNCC 3 cut(s) 628, 823, 865
BmiI GGNNCC 4 cut(s) 630, 1016, 1284, 1300
BmrFI CCNGG 3 cut(s) 158, 675, 821
BmsI GCATC 3 cut(s) 165, 250, 1279
BmtI GCTAGC 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 45
BplI GAGNNNNNCTC 4 cut(s) 50, 82, 938, 970
BpmI CTGGAG 2 cut(s) 803, 1098
Bpu10I CCTNAGC 1 cut(s) 1511
BpuEI CTTGAG 6 cut(s) 153, 397, 458, 585, 907, 1461
BsaBI GATNNNNATC 1 cut(s) 1324
BsaHI GRCGYC 1 cut(s) 1257
BsaJI CCNNGG 5 cut(s) 674, 937, 1010, 1048, 1370
Bsc4I CCNNNNNNNGG 3 cut(s) 959, 960, 1292
Bse118I RCCGGY 1 cut(s) 1292
Bse1I ACTGG 1 cut(s) 135
Bse3DI GCAATG 3 cut(s) 760, 1114, 1185
Bse8I GATNNNNATC 1 cut(s) 1324
BseBI CCWGG 3 cut(s) 158, 675, 821
BseDI CCNNGG 5 cut(s) 674, 937, 1010, 1048, 1370
BseGI GGATG 3 cut(s) 737, 1393, 1471
BseJI GATNNNNATC 1 cut(s) 1324
BseLI CCNNNNNNNGG 3 cut(s) 959, 960, 1292
BseMI GCAATG 3 cut(s) 760, 1114, 1185
BseMII CTCAG 2 cut(s) 615, 1502
BseNI ACTGG 1 cut(s) 135
BsePI GCGCGC 1 cut(s) 362
BseRI GAGGAG 1 cut(s) 4
BseSI GKGCMC 1 cut(s) 703
Bsh1236I CGCG 1 cut(s) 364
BshNI GGYRCC 1 cut(s) 1298
BsiHKAI GWGCWC 1 cut(s) 623
BsiHKCI CYCGRG 1 cut(s) 303
BsiSI CCGG 1 cut(s) 1293
BslI CCNNNNNNNGG 3 cut(s) 959, 960, 1292
BsmAI GTCTC 2 cut(s) 821, 900
BsmBI CGTCTC 1 cut(s) 900
BsoBI CYCGRG 1 cut(s) 303
Bsp1286I GDGCHC 2 cut(s) 623, 703
Bsp1407I TGTACA 1 cut(s) 103
Bsp143I GATC 6 cut(s) 248, 463, 678, 772, 1036, 1282
Bsp19I CCATGG 2 cut(s) 937, 1048
BspACI CCGC 1 cut(s) 798
BspCNI CTCAG 2 cut(s) 616, 1503
BspFNI CGCG 1 cut(s) 364
BspHI TCATGA 1 cut(s) 1147
BspLI GGNNCC 4 cut(s) 630, 1016, 1284, 1300
BspMAI CTGCAG 1 cut(s) 501
BspOI GCTAGC 1 cut(s) 362
BspPI GGATC 6 cut(s) 256, 686, 780, 1031, 1277, 1290
BspT107I GGYRCC 1 cut(s) 1298
BspTI CTTAAG 1 cut(s) 745
BsrDI GCAATG 3 cut(s) 760, 1114, 1185
BsrFI RCCGGY 1 cut(s) 1292
BsrGI TGTACA 1 cut(s) 103
BsrI ACTGG 1 cut(s) 135
BssAI RCCGGY 1 cut(s) 1292
BssECI CCNNGG 5 cut(s) 674, 937, 1010, 1048, 1370
BssHII GCGCGC 1 cut(s) 362
BssMI GATC 6 cut(s) 248, 463, 678, 772, 1036, 1282
BssNI GRCGYC 1 cut(s) 1257
BssSI CACGAG 1 cut(s) 1230
BssT1I CCWWGG 3 cut(s) 937, 1010, 1048
Bst2BI CACGAG 1 cut(s) 1230
Bst2UI CCWGG 3 cut(s) 158, 675, 821
Bst4CI ACNGT 3 cut(s) 125, 1001, 1104
Bst6I CTCTTC 4 cut(s) 234, 467, 939, 1377
BstACI GRCGYC 1 cut(s) 1257
BstAFI CTTAAG 1 cut(s) 745
BstAUI TGTACA 1 cut(s) 103
BstC8I GCNNGC 4 cut(s) 63, 360, 364, 1074
BstDEI CTNAG 2 cut(s) 624, 1511
BstDSI CCRYGG 2 cut(s) 937, 1048
BstF5I GGATG 3 cut(s) 737, 1393, 1471
BstFNI CGCG 1 cut(s) 364
BstHHI GCGC 2 cut(s) 364, 366
BstKTI GATC 6 cut(s) 251, 466, 681, 775, 1039, 1285
BstMAI GTCTC 2 cut(s) 821, 900
BstMBI GATC 6 cut(s) 248, 463, 678, 772, 1036, 1282
BstMWI GCNNNNNNNGC 3 cut(s) 350, 359, 496
BstNI CCWGG 3 cut(s) 158, 675, 821
BstNSI RCATGY 1 cut(s) 611
BstSCI CCNGG 3 cut(s) 156, 673, 819
BstSFI CTRYAG 3 cut(s) 150, 264, 497
BstSLI GKGCMC 1 cut(s) 703
BstUI CGCG 1 cut(s) 364
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 4 cut(s) 678, 772, 1036, 1282
BstYI RGATCY 4 cut(s) 678, 772, 1036, 1282
BsuI GTATCC 1 cut(s) 975
BtgI CCRYGG 2 cut(s) 937, 1048
BtsCI GGATG 3 cut(s) 737, 1393, 1471
BtsI GCAGTG 1 cut(s) 494
BtsIMutI CAGTG 5 cut(s) 258, 494, 997, 1109, 1221
Cac8I GCNNGC 4 cut(s) 63, 360, 364, 1074
CaiI CAGNNNCTG 1 cut(s) 62
CciI TCATGA 1 cut(s) 1147
CfoI GCGC 2 cut(s) 364, 366
Cfr10I RCCGGY 1 cut(s) 1292
Cfr13I GGNCC 3 cut(s) 628, 823, 865
CseI GACGC 1 cut(s) 1246
Csp6I GTAC 4 cut(s) 104, 138, 1236, 1299
CviAII CATG 9 cut(s) 107, 355, 608, 645, 938, 1049, 1148, 1191, 1303
CviQI GTAC 4 cut(s) 104, 138, 1236, 1299
DdeI CTNAG 2 cut(s) 624, 1511
DpnI GATC 6 cut(s) 250, 465, 680, 774, 1038, 1284
DpnII GATC 6 cut(s) 248, 463, 678, 772, 1036, 1282
DraI TTTAAA 1 cut(s) 768
Eam1104I CTCTTC 4 cut(s) 234, 467, 939, 1377
EarI CTCTTC 4 cut(s) 234, 467, 939, 1377
Ecl136II GAGCTC 1 cut(s) 621
Eco130I CCWWGG 3 cut(s) 937, 1010, 1048
Eco24I GRGCYC 1 cut(s) 623
Eco47I GGWCC 3 cut(s) 628, 823, 865
Eco53kI GAGCTC 1 cut(s) 621
Eco57I CTGAAG 4 cut(s) 39, 330, 761, 845
Eco88I CYCGRG 1 cut(s) 303
EcoICRI GAGCTC 1 cut(s) 621
EcoO109I RGGNCCY 3 cut(s) 628, 823, 865
EcoRII CCWGG 3 cut(s) 156, 673, 819
EcoT14I CCWWGG 3 cut(s) 937, 1010, 1048
EcoT38I GRGCYC 1 cut(s) 623
ErhI CCWWGG 3 cut(s) 937, 1010, 1048
Esp3I CGTCTC 1 cut(s) 900
FaeI CATG 9 cut(s) 110, 358, 611, 648, 941, 1052, 1151, 1194, 1306
FalI AAGNNNNNCTT 2 cut(s) 1397, 1429
FatI CATG 9 cut(s) 106, 354, 607, 644, 937, 1048, 1147, 1190, 1302
FokI GGATG 3 cut(s) 724, 1400, 1458
FriOI GRGCYC 1 cut(s) 623
FspBI CTAG 3 cut(s) 359, 933, 1034
GlaI GCGC 2 cut(s) 363, 365
GsuI CTGGAG 2 cut(s) 803, 1098
HapII CCGG 1 cut(s) 1293
HgaI GACGC 1 cut(s) 1246
HhaI GCGC 2 cut(s) 364, 366
Hin1I GRCGYC 1 cut(s) 1257
Hin1II CATG 9 cut(s) 110, 358, 611, 648, 941, 1052, 1151, 1194, 1306
Hin6I GCGC 2 cut(s) 362, 364
HinP1I GCGC 2 cut(s) 362, 364
HpaII CCGG 1 cut(s) 1293
HphI GGTGA 6 cut(s) 364, 441, 539, 731, 773, 899
Hpy166II GTNNAC 2 cut(s) 695, 1367
Hpy188III TCNNGA 8 cut(s) 170, 303, 467, 863, 968, 1027, 1148, 1286
Hpy8I GTNNAC 2 cut(s) 695, 1367
Hpy99I CGWCG 1 cut(s) 1262
HpyAV CCTTC 7 cut(s) 71, 518, 836, 869, 1028, 1154, 1439
HpyCH4III ACNGT 3 cut(s) 125, 1001, 1104
HpyCH4IV ACGT 2 cut(s) 697, 1430
HpyCH4V TGCA 7 cut(s) 499, 1006, 1107, 1112, 1164, 1190, 1242
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 359, 496
HpyF3I CTNAG 2 cut(s) 624, 1511
HpySE526I ACGT 2 cut(s) 697, 1430
Hsp92I GRCGYC 1 cut(s) 1257
Hsp92II CATG 9 cut(s) 110, 358, 611, 648, 941, 1052, 1151, 1194, 1306
HspAI GCGC 2 cut(s) 362, 364
KpnI GGTACC 1 cut(s) 1302
Kzo9I GATC 6 cut(s) 248, 463, 678, 772, 1036, 1282
LmnI GCTCC 1 cut(s) 428
LweI GCATC 3 cut(s) 165, 250, 1279
MaeI CTAG 3 cut(s) 359, 933, 1034
MaeII ACGT 2 cut(s) 697, 1430
MaeIII GTNAC 8 cut(s) 179, 274, 319, 447, 610, 928, 1085, 1426
MalI GATC 6 cut(s) 250, 465, 680, 774, 1038, 1284
MboI GATC 6 cut(s) 248, 463, 678, 772, 1036, 1282
MfeI CAATTG 1 cut(s) 24
MflI RGATCY 4 cut(s) 678, 772, 1036, 1282
MhlI GDGCHC 2 cut(s) 623, 703
MluCI AATT 6 cut(s) 19, 24, 110, 416, 1022, 1439
MmeI TCCRAC 3 cut(s) 221, 854, 883
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 5 cut(s) 213, 570, 746, 767, 1170
MspA1I CMGCKG 1 cut(s) 798
MspCI CTTAAG 1 cut(s) 745
MspI CCGG 1 cut(s) 1293
MspR9I CCNGG 3 cut(s) 158, 675, 821
MunI CAATTG 1 cut(s) 24
MvaI CCWGG 3 cut(s) 158, 675, 821
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 3 cut(s) 350, 359, 496
NcoI CCATGG 2 cut(s) 937, 1048
NdeII GATC 6 cut(s) 248, 463, 678, 772, 1036, 1282
NheI GCTAGC 1 cut(s) 358
NlaIII CATG 9 cut(s) 110, 358, 611, 648, 941, 1052, 1151, 1194, 1306
NlaIV GGNNCC 4 cut(s) 630, 1016, 1284, 1300
NmuCI GTSAC 4 cut(s) 319, 447, 928, 1085
NspI RCATGY 1 cut(s) 611
PaeR7I CTCGAG 1 cut(s) 303
PagI TCATGA 1 cut(s) 1147
PauI GCGCGC 1 cut(s) 362
PciI ACATGT 1 cut(s) 607
PdmI GAANNNNTTC 1 cut(s) 8
PfoI TCCNGGA 1 cut(s) 819
PpuMI RGGWCCY 3 cut(s) 628, 823, 865
PscI ACATGT 1 cut(s) 607
Psp124BI GAGCTC 1 cut(s) 623
Psp5II RGGWCCY 3 cut(s) 628, 823, 865
Psp6I CCWGG 3 cut(s) 156, 673, 819
PspGI CCWGG 3 cut(s) 156, 673, 819
PspN4I GGNNCC 4 cut(s) 630, 1016, 1284, 1300
PspPI GGNCC 3 cut(s) 628, 823, 865
PspPPI RGGWCCY 3 cut(s) 628, 823, 865
PstI CTGCAG 1 cut(s) 501
PstNI CAGNNNCTG 1 cut(s) 62
PsuI RGATCY 4 cut(s) 678, 772, 1036, 1282
PteI GCGCGC 1 cut(s) 362
RsaI GTAC 4 cut(s) 105, 139, 1237, 1300
RsaNI GTAC 4 cut(s) 104, 138, 1236, 1299
SacI GAGCTC 1 cut(s) 623
SaqAI TTAA 5 cut(s) 213, 570, 746, 767, 1170
Sau3AI GATC 6 cut(s) 248, 463, 678, 772, 1036, 1282
Sau96I GGNCC 3 cut(s) 628, 823, 865
ScrFI CCNGG 3 cut(s) 158, 675, 821
SduI GDGCHC 2 cut(s) 623, 703
SfaNI GCATC 3 cut(s) 165, 250, 1279
SfcI CTRYAG 3 cut(s) 150, 264, 497
Sfr274I CTCGAG 1 cut(s) 303
SinI GGWCC 3 cut(s) 628, 823, 865
SlaI CTCGAG 1 cut(s) 303
SmlI CTYRAG 8 cut(s) 168, 303, 376, 437, 600, 745, 922, 1476
SmoI CTYRAG 8 cut(s) 168, 303, 376, 437, 600, 745, 922, 1476
Sse9I AATT 6 cut(s) 19, 24, 110, 416, 1022, 1439
SsiI CCGC 1 cut(s) 798
SspI AATATT 1 cut(s) 517
SspMI CTAG 3 cut(s) 359, 933, 1034
SstI GAGCTC 1 cut(s) 623
StyD4I CCNGG 3 cut(s) 156, 673, 819
StyI CCWWGG 3 cut(s) 937, 1010, 1048
TaaI ACNGT 3 cut(s) 125, 1001, 1104
TaiI ACGT 2 cut(s) 700, 1433
TaqI TCGA 1 cut(s) 304
TasI AATT 6 cut(s) 19, 24, 110, 416, 1022, 1439
TatI WGTACW 1 cut(s) 103
Tru1I TTAA 5 cut(s) 213, 570, 746, 767, 1170
Tru9I TTAA 5 cut(s) 213, 570, 746, 767, 1170
TscAI CASTG 5 cut(s) 258, 501, 1004, 1109, 1228
TseFI GTSAC 4 cut(s) 319, 447, 928, 1085
Tsp45I GTSAC 4 cut(s) 319, 447, 928, 1085
TspDTI ATGAA 7 cut(s) 17, 123, 726, 989, 1107, 1136, 1164
TspGWI ACGGA 1 cut(s) 1352
TspRI CASTG 5 cut(s) 258, 501, 1004, 1109, 1228
Vha464I CTTAAG 1 cut(s) 745
VpaK11BI GGWCC 3 cut(s) 628, 823, 865
XapI RAATTY 1 cut(s) 110
XceI RCATGY 1 cut(s) 611
XhoI CTCGAG 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 3 cut(s) 359, 933, 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.