RLG00000021799

ankyrin repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000679
Physical Location & Seq
Reverse (-)
78385844 .. 78387603
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021799

Sequence Viewer

Length: 468 bp
ATGAGAGGCAAGAAAGTTGAAATAAAAAGTTTAATTCCAAAATTGGTTTTGGGAGCTGAGTTTGAGAAGATGTCACCTCAACAACGACAACAAGAGAAGAATATTCAAAATCAGCTTCCACAGCAGAAGTCGAATGAGAATATTATGGAAGGTGATAACCCTGAACAAGGTTCTTGGGCTGATAGATTAGTCCTCGGACAACCAGTGGCGTGTTCCACTGAACCTCAAGTTACCAAGAACTCTGAGGATCCAAGCACTCCTACATGGCTAAAGGTTTTCAAGAAGTGGTTTCCTGGGTTCTTACAAGGTCTGTCAAAGCATTCAAATTATCCTCTGGATCCAAGACGGCATCTCGTTTTGGAGTCCCTGTCCAAGAAATGGAGCAAATCCTACTTCCTTCGTGAATTTGATTTCTACAAGTCCGGCCTAGATTTTGAGCCGACTAGCACCACTGTCACAATAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

156

Amino Acids

17.87

Weight (kDa)

9.16

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 378
AclWI GGATC 4 cut(s) 242, 255, 332, 345
AcsI RAATTY 1 cut(s) 404
AfiI CCNNNNNNNGG 2 cut(s) 167, 378
AgsI TTSAA 4 cut(s) 20, 107, 280, 324
AjnI CCWGG 1 cut(s) 292
AleI CACNNNNGTG 1 cut(s) 461
AluBI AGCT 2 cut(s) 56, 115
AluI AGCT 2 cut(s) 56, 115
AlwI GGATC 4 cut(s) 242, 255, 332, 345
AoxI GGCC 1 cut(s) 424
ApoI RAATTY 1 cut(s) 404
AsuHPI GGTGA 2 cut(s) 66, 164
BamHI GGATCC 2 cut(s) 247, 337
BceAI ACGGC 1 cut(s) 362
BciT130I CCWGG 1 cut(s) 294
BfaI CTAG 2 cut(s) 428, 444
Bme1390I CCNGG 1 cut(s) 294
BmiI GGNNCC 2 cut(s) 249, 339
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 358
BpuEI CTTGAG 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 193, 293
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 378
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 193, 293
BseLI CCNNNNNNNGG 2 cut(s) 167, 378
BseMII CTCAG 2 cut(s) 48, 234
BseNI ACTGG 1 cut(s) 203
BshFI GGCC 1 cut(s) 426
BsiSI CCGG 1 cut(s) 423
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 2 cut(s) 167, 378
BsmFI GGGAC 1 cut(s) 349
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 1 cut(s) 426
Bsp143I GATC 2 cut(s) 247, 337
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 2 cut(s) 49, 235
BspLI GGNNCC 2 cut(s) 249, 339
BspPI GGATC 4 cut(s) 242, 255, 332, 345
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 193, 293
BssMI GATC 2 cut(s) 247, 337
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 454
BstDEI CTNAG 2 cut(s) 57, 243
BstENI CCTNNNNNAGG 1 cut(s) 165
BstKTI GATC 2 cut(s) 250, 340
BstMBI GATC 2 cut(s) 247, 337
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BstX2I RGATCY 2 cut(s) 247, 337
BstYI RGATCY 2 cut(s) 247, 337
BsuRI GGCC 1 cut(s) 426
BtsIMutI CAGTG 3 cut(s) 210, 216, 450
CviAII CATG 1 cut(s) 264
CviJI RGCY 6 cut(s) 56, 115, 179, 268, 426, 439
CviKI_1 RGCY 6 cut(s) 56, 115, 179, 268, 426, 439
DdeI CTNAG 2 cut(s) 57, 243
DpnI GATC 2 cut(s) 249, 339
DpnII GATC 2 cut(s) 247, 337
EcoNI CCTNNNNNAGG 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 292
FaeI CATG 1 cut(s) 267
FaiI YATR 2 cut(s) 146, 265
FaqI GGGAC 1 cut(s) 349
FatI CATG 1 cut(s) 263
FspBI CTAG 2 cut(s) 428, 444
HaeIII GGCC 1 cut(s) 426
HapII CCGG 1 cut(s) 423
Hin1II CATG 1 cut(s) 267
HinfI GANTC 1 cut(s) 362
HpaII CCGG 1 cut(s) 423
HphI GGTGA 2 cut(s) 66, 164
Hpy188I TCNGA 2 cut(s) 197, 244
Hpy188III TCNNGA 3 cut(s) 280, 335, 401
HpyAV CCTTC 2 cut(s) 143, 407
HpyCH4III ACNGT 1 cut(s) 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 2 cut(s) 57, 243
Hsp92II CATG 1 cut(s) 267
Kzo9I GATC 2 cut(s) 247, 337
LmnI GCTCC 2 cut(s) 53, 381
LpnPI CCDG 7 cut(s) 174, 216, 279, 306, 320, 380, 436
LweI GCATC 1 cut(s) 358
MaeI CTAG 2 cut(s) 428, 444
MaeIII GTNAC 3 cut(s) 72, 229, 454
MalI GATC 2 cut(s) 249, 339
MboI GATC 2 cut(s) 247, 337
MboII GAAGA 2 cut(s) 79, 109
MflI RGATCY 2 cut(s) 247, 337
MluCI AATT 4 cut(s) 33, 41, 325, 404
MlyI GAGTC 1 cut(s) 371
MnlI CCTC 5 cut(s) 87, 203, 234, 238, 342
MseI TTAA 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 461
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 1 cut(s) 294
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 2 cut(s) 247, 337
NlaIII CATG 1 cut(s) 267
NlaIV GGNNCC 2 cut(s) 249, 339
NmuCI GTSAC 2 cut(s) 72, 454
OliI CACNNNNGTG 1 cut(s) 461
PctI GAATGC 1 cut(s) 319
PflMI CCANNNNNTGG 1 cut(s) 378
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 249, 339
PsuI RGATCY 2 cut(s) 247, 337
RseI CAYNNNNRTG 1 cut(s) 461
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 2 cut(s) 247, 337
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 294
SetI ASST 8 cut(s) 58, 79, 117, 154, 172, 226, 276, 310
SfaNI GCATC 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
Sse9I AATT 4 cut(s) 33, 41, 325, 404
SspI AATATT 2 cut(s) 103, 142
SspMI CTAG 2 cut(s) 428, 444
StyD4I CCNGG 1 cut(s) 292
TaaI ACNGT 1 cut(s) 454
TaqI TCGA 1 cut(s) 131
TasI AATT 4 cut(s) 33, 41, 325, 404
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 3 cut(s) 210, 223, 457
TseFI GTSAC 2 cut(s) 72, 454
Tsp45I GTSAC 2 cut(s) 72, 454
TspRI CASTG 3 cut(s) 210, 223, 457
Van91I CCANNNNNTGG 1 cut(s) 378
XagI CCTNNNNNAGG 1 cut(s) 165
XapI RAATTY 1 cut(s) 404
XspI CTAG 2 cut(s) 428, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.