Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000679

Physical Location & Seq

Genomic Coordinates Reverse (-)

78390868 .. 78391509

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021800

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGATCTGGAAATACGAAGCTTCGGAGCCTCGGAGCTCTTCAACTCCTCTCCGAAATGTAGCTACTTTTCTTATAACGGTGAAAGCGCCGGTTTGTGTTCCGTCGGTGCCGCGGCGAGTGCGGACCGATTCGACTCGGTCGATGCCGAGACGAGTCTGATCAGAGCCGTCTATCTCGACAGCAAGGCCGAGCTTTTGACTCAGACGAAGCGGCTCGCCGGCGGCGACATGCTGGACCGAGCGACTGCGTCGAAGCTCCTGCTCCTCTGCTGCAACTTCGACTCGGCGGAGTGCGCCTCCGCACTTCTCGGAGGCGAACTCGGGACGGTTCCGCTCGTGAACGAATTCGACGACTCGGGGAAATCACCACTGCACACGGCGGCGTCGGCTCACGCGTCGCGGTGCGTGGAGGTTTTGCTGAAGAAACACGCTCGTACGGACCTGAGGACCAAGGACGGTCAGGCACAGCTAGCACTGGAGTTGTCGCTTAGTGAAACAAGGTTAGGCCAATCAATATCAAAACGTCGAAATCACGACGTCGTTTTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

184

Amino Acids

19.56

Weight (kDa)

5.57

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	74 - 147	5.8e-07	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28880
fragaria_vesca	FvH4_1g02370 FvH4_1g02370 FvH4_6g48800 FvH4_6g48800 FvH4_6g48800 FvH4_6g49030 FvH4_6g49030 FvH4_6g49030
malus_domestica	MD09G1050300.v1.1
prunus_persica	Prupe.3G268600_v2.0.a1 Prupe.3G268600_v2.0.a1 Prupe.3G268600_v2.0.a1 Prupe.3G268600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0168671 RchiOBHm_Chr2g0169051 RchiOBHm_Chr2g0170061 RchiOBHm_Chr2g0170071 RchiOBHm_Chr6g0246231 RchiOBHm_Chr6g0246241
rosa_laevigata	RLG00000015269 RLG00000021799 RLG00000021800 RLG00000021827 RLG00000021828 RLG00000035229
rosa_multiflora	Rmu_sc0002416.1_g000001 Rmu_sc0009451.1_g000006 Rmu_sc0013078.1_g000013 Rmu_sc0032865.1_g000001 Rmu_ssc0000393.1_g000027
rosa_roxburghii	Rroxscaffold_2G00081630 Rroxscaffold_2G00082770 Rroxscaffold_7G00214740
rosa_rugosa	Rorug02G0534500 Rorug02G0536600 Rorug02G0545500 Rorug02G0545500 Rorug05G0519700 Rorug05G0519800
rosa_samantha	Rh2AG605400 Rh2AG608100 Rh2AG608200 Rh2AG617600 Rh2BG618300 Rh2BG620800 Rh2BG621000 Rh2BG621100 Rh2BG629100 Rh2CG586500 Rh2CG589800 Rh2CG589900 Rh2CG598400 Rh2DG628900 Rh2DG631400 Rh2DG631600 Rh2DG631700 Rh2DG640900 Rh5AG381700 Rh5BG393400 Rh5BG393500 Rh5CG417500 Rh6AG033900 Rh6BG029100 Rh6CG029300 Rh6CG029400 Rh6CG029500 Rh6CG220500 Rh6DG028400 Rh6DG028500
rosa_wichuraiana	Rw0G009340 Rw2G050180 Rw2G050430 Rw2G051130 Rw6G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	75
AatII	GACGTC	1 cut(s)	540
AccB1I	GGYRCC	1 cut(s)	107
AccBSI	CCGCTC	1 cut(s)	334
AccII	CGCG	3 cut(s)	113, 395, 400
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	440
AcyI	GRCGYC	2 cut(s)	383, 537
AfaI	GTAC	1 cut(s)	436
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	6 cut(s)	21, 37, 63, 193, 256, 469
AluI	AGCT	6 cut(s)	21, 37, 63, 193, 256, 469
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	2 cut(s)	320, 355
AoxI	GGCC	2 cut(s)	186, 505
ApeKI	GCWGC	1 cut(s)	270
ApoI	RAATTY	1 cut(s)	344
ArsI	GACNNNNNNTTYG	1 cut(s)	527
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	2 cut(s)	89, 296
AspS9I	GGNCC	4 cut(s)	124, 235, 439, 447
AsuHPI	GGTGA	2 cut(s)	92, 357
AsuNHI	GCTAGC	1 cut(s)	469
AvaI	CYCGRG	2 cut(s)	320, 355
AvaII	GGWCC	4 cut(s)	124, 235, 439, 447
AxyI	CCTNAGG	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	39
BauI	CACGAG	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	257
BceAI	ACGGC	2 cut(s)	152, 393
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BclI	TGATCA	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	470
BfoI	RGCGCY	1 cut(s)	90
BisI	GCNGC	6 cut(s)	111, 114, 212, 223, 271, 381
BlsI	GCNGC	6 cut(s)	112, 115, 213, 224, 272, 382
Bme18I	GGWCC	4 cut(s)	124, 235, 439, 447
BmeT110I	CYCGRG	2 cut(s)	320, 355
BmgT120I	GGNCC	4 cut(s)	124, 235, 439, 447
BmiI	GGNNCC	3 cut(s)	28, 109, 330
BmsI	GCATC	1 cut(s)	133
BmtI	GCTAGC	1 cut(s)	473
BplI	GAGNNNNNCTC	4 cut(s)	281, 313, 303, 335
BpmI	CTGGAG	1 cut(s)	497
BsaHI	GRCGYC	2 cut(s)	383, 537
BsaJI	CCNNGG	3 cut(s)	30, 111, 450
Bse118I	RCCGGY	2 cut(s)	89, 218
Bse1I	ACTGG	1 cut(s)	480
Bse21I	CCTNAGG	1 cut(s)	443
BseDI	CCNNGG	3 cut(s)	30, 111, 450
BseMII	CTCAG	2 cut(s)	215, 434
BseNI	ACTGG	1 cut(s)	480
BseRI	GAGGAG	2 cut(s)	37, 254
BseXI	GCAGC	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	356
Bsh1236I	CGCG	3 cut(s)	113, 395, 400
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	188, 507
BshNI	GGYRCC	1 cut(s)	107
BsiEI	CGRYCG	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	39
BsiHKCI	CYCGRG	2 cut(s)	320, 355
BsiSI	CCGG	2 cut(s)	90, 219
BsiWI	CGTACG	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	337
BsmAI	GTCTC	1 cut(s)	143
BsmBI	CGTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	188, 507
BsoBI	CYCGRG	2 cut(s)	320, 355
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	4, 159
BspANI	GGCC	2 cut(s)	188, 507
BspCNI	CTCAG	2 cut(s)	214, 435
BspFNI	CGCG	3 cut(s)	113, 395, 400
BspLI	GGNNCC	3 cut(s)	28, 109, 330
BspOI	GCTAGC	1 cut(s)	473
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	334
BsrFI	RCCGGY	2 cut(s)	89, 218
BsrI	ACTGG	1 cut(s)	480
BssAI	RCCGGY	2 cut(s)	89, 218
BssECI	CCNNGG	3 cut(s)	30, 111, 450
BssMI	GATC	2 cut(s)	4, 159
BssNI	GRCGYC	2 cut(s)	383, 537
BssSI	CACGAG	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	450
Bst2BI	CACGAG	1 cut(s)	335
Bst4CI	ACNGT	3 cut(s)	80, 328, 458
Bst6I	CTCTTC	1 cut(s)	44
BstACI	GRCGYC	2 cut(s)	383, 537
BstC8I	GCNNGC	3 cut(s)	216, 220, 471
BstDEI	CTNAG	3 cut(s)	201, 443, 488
BstDSI	CCRYGG	1 cut(s)	111
BstFNI	CGCG	3 cut(s)	113, 395, 400
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	2 cut(s)	89, 296
BstKTI	GATC	2 cut(s)	7, 162
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	4, 159
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 293, 386, 470
BstNSI	RCATGY	1 cut(s)	232
BstUI	CGCG	3 cut(s)	113, 395, 400
BstV1I	GCAGC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	443
BsuRI	GGCC	2 cut(s)	188, 507
BtgI	CCRYGG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	2 cut(s)	368, 473
Cac8I	GCNNGC	3 cut(s)	216, 220, 471
CfoI	GCGC	2 cut(s)	89, 296
Cfr10I	RCCGGY	2 cut(s)	89, 218
Cfr13I	GGNCC	4 cut(s)	124, 235, 439, 447
Cfr42I	CCGCGG	1 cut(s)	114
CpoI	CGGWCCG	1 cut(s)	124
CseI	GACGC	3 cut(s)	237, 372, 384
Csp6I	GTAC	1 cut(s)	435
CspI	CGGWCCG	1 cut(s)	124
CviAII	CATG	1 cut(s)	229
CviQI	GTAC	1 cut(s)	435
DdeI	CTNAG	3 cut(s)	201, 443, 488
DpnI	GATC	2 cut(s)	6, 161
DpnII	GATC	2 cut(s)	4, 159
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	450
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	4 cut(s)	124, 235, 439, 447
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	440
Eco81I	CCTNAGG	1 cut(s)	443
Eco88I	CYCGRG	2 cut(s)	320, 355
EcoICRI	GAGCTC	1 cut(s)	37
EcoRI	GAATTC	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	450
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	1 cut(s)	232
FaiI	YATR	2 cut(s)	75, 230
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	1 cut(s)	228
FbaI	TGATCA	1 cut(s)	159
Fnu4HI	GCNGC	6 cut(s)	111, 114, 212, 223, 271, 381
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	6 cut(s)	111, 114, 212, 223, 271, 381
FspBI	CTAG	1 cut(s)	470
GlaI	GCGC	2 cut(s)	88, 295
GluI	GCNGC	6 cut(s)	111, 114, 212, 223, 271, 381
GsuI	CTGGAG	1 cut(s)	497
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	188, 507
HapII	CCGG	2 cut(s)	90, 219
HgaI	GACGC	3 cut(s)	237, 372, 384
HhaI	GCGC	2 cut(s)	89, 296
Hin1I	GRCGYC	2 cut(s)	383, 537
Hin1II	CATG	1 cut(s)	232
Hin6I	GCGC	2 cut(s)	87, 294
HinP1I	GCGC	2 cut(s)	87, 294
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	6 cut(s)	129, 134, 154, 199, 281, 353
HpaII	CCGG	2 cut(s)	90, 219
HphI	GGTGA	2 cut(s)	92, 357
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	7 cut(s)	26, 34, 54, 159, 164, 204, 311
Hpy188III	TCNNGA	5 cut(s)	8, 176, 322, 337, 533
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	8 cut(s)	107, 253, 353, 388, 400, 528, 539, 542
HpyCH4III	ACNGT	3 cut(s)	80, 328, 458
HpyCH4IV	ACGT	2 cut(s)	523, 537
HpyCH4V	TGCA	2 cut(s)	273, 373
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 293, 386, 470
HpyF3I	CTNAG	3 cut(s)	201, 443, 488
HpySE526I	ACGT	2 cut(s)	523, 537
Hsp92I	GRCGYC	2 cut(s)	383, 537
Hsp92II	CATG	1 cut(s)	232
HspAI	GCGC	2 cut(s)	87, 294
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	159
KspI	CCGCGG	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	4, 159
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	4 cut(s)	26, 34, 261, 267
LpnPI	CCDG	7 cut(s)	103, 218, 232, 272, 446, 455, 461
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	2 cut(s)	523, 537
MalI	GATC	2 cut(s)	6, 161
MbiI	CCGCTC	1 cut(s)	334
MboI	GATC	2 cut(s)	4, 159
MboII	GAAGA	2 cut(s)	31, 433
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	1 cut(s)	344
MluI	ACGCGT	1 cut(s)	393
MlyI	GAGTC	5 cut(s)	128, 163, 193, 275, 347
MnlI	CCTC	7 cut(s)	40, 58, 275, 305, 307, 403, 438
MreI	CGCCGGCG	1 cut(s)	218
MroNI	GCCGGC	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	2 cut(s)	90, 219
MvnI	CGCG	3 cut(s)	113, 395, 400
MwoI	GCNNNNNNNGC	4 cut(s)	119, 293, 386, 470
NaeI	GCCGGC	1 cut(s)	220
NdeII	GATC	2 cut(s)	4, 159
NgoMIV	GCCGGC	1 cut(s)	218
NheI	GCTAGC	1 cut(s)	469
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	3 cut(s)	28, 109, 330
NmeAIII	GCCGAG	3 cut(s)	172, 214, 263
NspI	RCATGY	1 cut(s)	232
PciSI	GCTCTTC	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	5 cut(s)	138, 222, 348, 392, 543
PdiI	GCCGGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	129
Pfl23II	CGTACG	1 cut(s)	434
PflFI	GACNNNGTC	2 cut(s)	137, 247
PkrI	GCNGC	6 cut(s)	112, 115, 213, 224, 272, 382
PleI	GAGTC	5 cut(s)	128, 162, 193, 275, 347
PpsI	GAGTC	5 cut(s)	128, 162, 193, 275, 347
PsiI	TTATAA	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	39
PspLI	CGTACG	1 cut(s)	434
PspN4I	GGNNCC	3 cut(s)	28, 109, 330
PspPI	GGNCC	4 cut(s)	124, 235, 439, 447
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	2 cut(s)	137, 247
RsaI	GTAC	1 cut(s)	436
RsaNI	GTAC	1 cut(s)	435
Rsr2I	CGGWCCG	1 cut(s)	124
RsrII	CGGWCCG	1 cut(s)	124
SacI	GAGCTC	1 cut(s)	39
SacII	CCGCGG	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	44
SatI	GCNGC	6 cut(s)	111, 114, 212, 223, 271, 381
Sau3AI	GATC	2 cut(s)	4, 159
Sau96I	GGNCC	4 cut(s)	124, 235, 439, 447
SchI	GAGTC	5 cut(s)	128, 163, 193, 275, 347
SduI	GDGCHC	1 cut(s)	39
SfaNI	GCATC	1 cut(s)	133
Sfr303I	CCGCGG	1 cut(s)	114
SgrAI	CRCCGGYG	1 cut(s)	218
SgrBI	CCGCGG	1 cut(s)	114
SinI	GGWCC	4 cut(s)	124, 235, 439, 447
Sse9I	AATT	1 cut(s)	344
SspMI	CTAG	1 cut(s)	470
SstI	GAGCTC	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	3 cut(s)	80, 328, 458
TaiI	ACGT	2 cut(s)	526, 540
TaqI	TCGA	7 cut(s)	132, 141, 177, 251, 279, 348, 526
TaqII	GACCGA	3 cut(s)	127, 141, 252
TasI	AATT	1 cut(s)	344
TauI	GCSGC	5 cut(s)	113, 116, 214, 225, 383
TfiI	GAWTC	1 cut(s)	129
TscAI	CASTG	2 cut(s)	375, 480
TseI	GCWGC	1 cut(s)	270
TspGWI	ACGGA	2 cut(s)	91, 452
TspRI	CASTG	2 cut(s)	375, 480
Tth111I	GACNNNGTC	2 cut(s)	137, 247
VpaK11BI	GGWCC	4 cut(s)	124, 235, 439, 447
XapI	RAATTY	1 cut(s)	344
XceI	RCATGY	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	1 cut(s)	470
ZraI	GACGTC	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.