RLG00000035229

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000679
Physical Location & Seq
Forward (+)
63229841 .. 63233587
3747 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035229

Sequence Viewer

Length: 1287 bp
ATGATTCATGGATCGGGAGCCTCGGAGGAGCTGTCCGAGTCAGGTCCTAGTTCTGGAAAACTCGGGAGGATTCCGTCGGTGAACGAGGTCGATCGACGACTTGGGAAAAAAGCCGCTGCACCCGGCTGCGTTGGCTCACACGTCACGGATTTGAGCATGGAAAAACTTCTGAGTGAAAAAACCAAGGATTTGAGCACGGAAATGCTTCTGAGTGAAAAAACCAAGGAGATTGCTGACATGGATCATTCGTACACTGTTAAAGGGCGCGTAGCTTCTCTGCCTGCTCTACTCATCGCCGCCGCCGCCGAGAAGGTTAACGATTCCGTCTTGGAGTTGCGTGATTCCGATTCGGGGGGGCAAGGAGAAGGACACTCTCTACGAATGTCTTATAAGGGAGGCTTTGGCCCCCGGAGGCCGTACAAAGATGCAGTTGAGGGCTGCCAAACGCGCCTCCACGGCGATGGAGAGCGAAAACTCAGAGAGAAGGAAGCTCGTGCTTCAAGAGATAGAGCTGCTTCAGCTCTTCGGAGCTGTTCCTCCGAGCGGTGGTGGGGACAAGAAGGTGGCGAGGAAGCTCAGCATGCTGCCGGCAATGGTAATTCAAAGGCCCTTGAGATCCTTCTGTTGGACCACCAGTTAGCTGTCCAGTATATCTCAGAACAGAAAGAAACCCCCCTCTTTTTCACTGTGAATAATGAGACTGAAGACTCTGCTGAGCTTCTTATGACTTGTGGAGCAAATAGTGAAGTCCTTAATGTGCGTGAGAAAAAAGCAATAGACCTGGCCTCTCAAGATATGCGCTACATATTGCTGAACGTCCCAACCAGTGTTAGCCTCATTAATCAGGCCTTCCCGAGTCAGCATAAATGTACTGCTTTAGAGGTGACAGATGAAGGCACCAGTACTGAAACAAATGTTAACTCAAGCACCGGGGCAAAGGTTCATAAGTACTTCGACTCCGACTCTCATCAAGGATATGTCATAGGAGTTAAGAAGGGAGCATACCCAAATGTTTTGGTAGCTGAGTTTGAGAAAATGTCACCTCAACAACGAGAACAAGAGAAGAATTTTCAATATCAGCTTCCACTGCAGAAGTACAACGAGTATATTATGGGTTCGTGGCATGGAACCACAATTTTGTGGATTCAGCTTCCAACTGAACTACTAGTTGGAGTAGATTCACAACGTACTCAAAAGTATACAGCAAACGACCCAAAAAACAAGAGGAAGGCCTATGAGATTTTGGAGAGCGAAATTGAAGATAAGTTTGTAGAAATCATCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

429

Amino Acids

47.3

Weight (kDa)

5.69

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 390
AccB1I GGYRCC 1 cut(s) 896
AccBSI CCGCTC 1 cut(s) 544
AccI GTMKAC 1 cut(s) 1199
AccII CGCG 2 cut(s) 267, 448
AciI CCGC 5 cut(s) 114, 297, 300, 303, 544
AclWI GGATC 3 cut(s) 19, 249, 610
AcsI RAATTY 1 cut(s) 1066
AcuI CTGAAG 2 cut(s) 501, 723
AfaI GTAC 7 cut(s) 251, 419, 871, 904, 950, 1097, 1189
AfiI CCNNNNNNNGG 5 cut(s) 53, 351, 543, 546, 625
AflIII ACRYGT 1 cut(s) 139
AgsI TTSAA 4 cut(s) 501, 603, 1073, 1259
AhlI ACTAGT 1 cut(s) 1165
AjiI CACGTC 1 cut(s) 142
AjnI CCWGG 1 cut(s) 780
AjuI GAANNNNNNNTTGG 2 cut(s) 1152, 1184
Alw21I GWGCWC 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 692
AlwI GGATC 3 cut(s) 19, 249, 610
Ama87I CYCGRG 2 cut(s) 62, 853
AoxI GGCC 6 cut(s) 403, 413, 606, 783, 846, 1230
ApeKI GCWGC 5 cut(s) 116, 126, 438, 512, 584
ApoI RAATTY 1 cut(s) 1066
AseI ATTAAT 1 cut(s) 840
Asp700I GAANNNNTTC 2 cut(s) 165, 204
AspLEI GCGC 3 cut(s) 267, 450, 801
AspS9I GGNCC 4 cut(s) 44, 404, 607, 628
AsuC2I CCSGG 3 cut(s) 123, 409, 931
AsuHPI GGTGA 3 cut(s) 91, 895, 1032
AvaI CYCGRG 2 cut(s) 62, 853
AvaII GGWCC 2 cut(s) 44, 628
BanI GGYRCC 1 cut(s) 896
BarI GAAGNNNNNNTAC 2 cut(s) 986, 1018
BauI CACGAG 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 711
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 5 cut(s) 103, 113, 425, 499, 571
BccI CCATC 1 cut(s) 455
BceAI ACGGC 2 cut(s) 400, 472
BciT130I CCWGG 1 cut(s) 782
BcnI CCSGG 3 cut(s) 123, 409, 931
BcoDI GTCTC 1 cut(s) 692
BcuI ACTAGT 1 cut(s) 1165
BfaI CTAG 2 cut(s) 48, 1166
BfmI CTRYAG 1 cut(s) 1088
BglI GCCNNNNNGGC 1 cut(s) 456
BisI GCNGC 9 cut(s) 114, 117, 127, 297, 300, 303, 439, 513, 585
BlpI GCTNAGC 2 cut(s) 576, 714
BlsI GCNGC 9 cut(s) 115, 118, 128, 298, 301, 304, 440, 514, 586
BmcAI AGTACT 2 cut(s) 904, 950
Bme1390I CCNGG 4 cut(s) 123, 409, 782, 931
Bme18I GGWCC 2 cut(s) 44, 628
BmeT110I CYCGRG 2 cut(s) 62, 853
BmgBI CACGTC 1 cut(s) 142
BmgT120I GGNCC 4 cut(s) 44, 404, 607, 628
BmiI GGNNCC 4 cut(s) 19, 406, 898, 1129
BmrFI CCNGG 4 cut(s) 123, 409, 782, 931
BmsI GCATC 1 cut(s) 415
BpiI GAAGAC 1 cut(s) 711
Bpu1102I GCTNAGC 2 cut(s) 576, 714
BpuEI CTTGAG 3 cut(s) 632, 774, 907
BpuMI CCSGG 3 cut(s) 123, 409, 931
BsaJI CCNNGG 6 cut(s) 21, 183, 222, 407, 454, 930
BsaXI ACNNNNNCTCC 4 cut(s) 17, 47, 941, 971
Bsc4I CCNNNNNNNGG 5 cut(s) 53, 351, 543, 546, 625
Bse118I RCCGGY 1 cut(s) 587
Bse1I ACTGG 4 cut(s) 634, 646, 825, 900
Bse3DI GCAATG 1 cut(s) 598
BseBI CCWGG 1 cut(s) 782
BseDI CCNNGG 6 cut(s) 21, 183, 222, 407, 454, 930
BseLI CCNNNNNNNGG 5 cut(s) 53, 351, 543, 546, 625
BseMI GCAATG 1 cut(s) 598
BseMII CTCAG 7 cut(s) 161, 200, 490, 590, 669, 705, 1014
BseNI ACTGG 4 cut(s) 634, 646, 825, 900
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 5 cut(s) 103, 113, 425, 499, 571
BsgI GTGCAG 1 cut(s) 102
Bsh1236I CGCG 2 cut(s) 267, 448
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 6 cut(s) 405, 415, 608, 785, 848, 1232
BshNI GGYRCC 1 cut(s) 896
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 197
BsiHKCI CYCGRG 2 cut(s) 62, 853
BsiSI CCGG 4 cut(s) 123, 409, 588, 930
BslFI GGGAC 2 cut(s) 567, 803
BslI CCNNNNNNNGG 5 cut(s) 53, 351, 543, 546, 625
BsmAI GTCTC 1 cut(s) 692
BsmFI GGGAC 2 cut(s) 567, 803
BsnI GGCC 6 cut(s) 405, 415, 608, 785, 848, 1232
BsoBI CYCGRG 2 cut(s) 62, 853
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 4 cut(s) 11, 91, 241, 615
Bsp1720I GCTNAGC 2 cut(s) 576, 714
BspACI CCGC 5 cut(s) 114, 297, 300, 303, 544
BspANI GGCC 6 cut(s) 405, 415, 608, 785, 848, 1232
BspCNI CTCAG 7 cut(s) 162, 201, 489, 589, 668, 706, 1015
BspFNI CGCG 2 cut(s) 267, 448
BspLI GGNNCC 4 cut(s) 19, 406, 898, 1129
BspMAI CTGCAG 1 cut(s) 1092
BspPI GGATC 3 cut(s) 19, 249, 610
BspQI GCTCTTC 1 cut(s) 528
BspT107I GGYRCC 1 cut(s) 896
BsrBI CCGCTC 1 cut(s) 544
BsrDI GCAATG 1 cut(s) 598
BsrFI RCCGGY 1 cut(s) 587
BsrI ACTGG 4 cut(s) 634, 646, 825, 900
BssAI RCCGGY 1 cut(s) 587
BssECI CCNNGG 6 cut(s) 21, 183, 222, 407, 454, 930
BssMI GATC 4 cut(s) 11, 91, 241, 615
BssNAI GTATAC 1 cut(s) 1200
BssSI CACGAG 1 cut(s) 492
BssT1I CCWWGG 2 cut(s) 183, 222
Bst1107I GTATAC 1 cut(s) 1200
Bst2BI CACGAG 1 cut(s) 492
Bst2UI CCWGG 1 cut(s) 782
Bst4CI ACNGT 2 cut(s) 256, 688
Bst6I CTCTTC 1 cut(s) 528
BstC8I GCNNGC 3 cut(s) 282, 582, 589
BstDEI CTNAG 7 cut(s) 170, 209, 476, 576, 655, 714, 1023
BstDSI CCRYGG 1 cut(s) 454
BstFNI CGCG 2 cut(s) 267, 448
BstHHI GCGC 3 cut(s) 267, 450, 801
BstKTI GATC 4 cut(s) 14, 94, 244, 618
BstMAI GTCTC 1 cut(s) 692
BstMBI GATC 4 cut(s) 11, 91, 241, 615
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 7 cut(s) 132, 302, 447, 456, 518, 581, 1087
BstNI CCWGG 1 cut(s) 782
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 4 cut(s) 121, 407, 780, 929
BstSFI CTRYAG 1 cut(s) 1088
BstUI CGCG 2 cut(s) 267, 448
BstV1I GCAGC 5 cut(s) 103, 113, 425, 499, 571
BstV2I GAAGAC 1 cut(s) 711
BstX2I RGATCY 1 cut(s) 615
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 1 cut(s) 615
BstZ17I GTATAC 1 cut(s) 1200
BsuRI GGCC 6 cut(s) 405, 415, 608, 785, 848, 1232
BtgI CCRYGG 1 cut(s) 454
BtgZI GCGATG 2 cut(s) 277, 474
BtrI CACGTC 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 1085
BtsIMutI CAGTG 4 cut(s) 252, 684, 832, 1085
Cac8I GCNNGC 3 cut(s) 282, 582, 589
CfoI GCGC 3 cut(s) 267, 450, 801
Cfr10I RCCGGY 1 cut(s) 587
Cfr13I GGNCC 4 cut(s) 44, 404, 607, 628
Csp6I GTAC 7 cut(s) 250, 418, 870, 903, 949, 1096, 1188
CviAII CATG 5 cut(s) 8, 157, 238, 581, 1124
CviQI GTAC 7 cut(s) 250, 418, 870, 903, 949, 1096, 1188
DdeI CTNAG 7 cut(s) 170, 209, 476, 576, 655, 714, 1023
DpnI GATC 4 cut(s) 13, 93, 243, 617
DpnII GATC 4 cut(s) 11, 91, 241, 615
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Eco130I CCWWGG 2 cut(s) 183, 222
Eco147I AGGCCT 2 cut(s) 848, 1232
Eco47I GGWCC 2 cut(s) 44, 628
Eco57I CTGAAG 2 cut(s) 501, 723
Eco88I CYCGRG 2 cut(s) 62, 853
EcoO109I RGGNCCY 2 cut(s) 44, 607
EcoRII CCWGG 1 cut(s) 780
EcoT14I CCWWGG 2 cut(s) 183, 222
ErhI CCWWGG 2 cut(s) 183, 222
FaeI CATG 5 cut(s) 11, 160, 241, 584, 1127
FalI AAGNNNNNCTT 2 cut(s) 383, 415
FaqI GGGAC 2 cut(s) 567, 803
FatI CATG 5 cut(s) 7, 156, 237, 580, 1123
FblI GTMKAC 1 cut(s) 1199
Fnu4HI GCNGC 9 cut(s) 114, 117, 127, 297, 300, 303, 439, 513, 585
Fsp4HI GCNGC 9 cut(s) 114, 117, 127, 297, 300, 303, 439, 513, 585
FspBI CTAG 2 cut(s) 48, 1166
GlaI GCGC 3 cut(s) 266, 449, 800
GluI GCNGC 9 cut(s) 114, 117, 127, 297, 300, 303, 439, 513, 585
HaeIII GGCC 6 cut(s) 405, 415, 608, 785, 848, 1232
HapII CCGG 4 cut(s) 123, 409, 588, 930
HhaI GCGC 3 cut(s) 267, 450, 801
Hin1II CATG 5 cut(s) 11, 160, 241, 584, 1127
Hin6I GCGC 3 cut(s) 265, 448, 799
HinP1I GCGC 3 cut(s) 265, 448, 799
HincII GTYRAC 2 cut(s) 316, 919
HindII GTYRAC 2 cut(s) 316, 919
HpaI GTTAAC 2 cut(s) 316, 919
HpaII CCGG 4 cut(s) 123, 409, 588, 930
HphI GGTGA 3 cut(s) 91, 895, 1032
Hpy166II GTNNAC 5 cut(s) 82, 252, 316, 919, 1200
Hpy188III TCNNGA 6 cut(s) 15, 54, 64, 501, 791, 853
Hpy8I GTNNAC 5 cut(s) 82, 252, 316, 919, 1200
Hpy99I CGWCG 2 cut(s) 79, 99
HpyAV CCTTC 9 cut(s) 304, 359, 478, 554, 629, 859, 887, 988, 1222
HpyCH4III ACNGT 2 cut(s) 256, 688
HpyCH4IV ACGT 3 cut(s) 141, 816, 1186
HpyCH4V TGCA 3 cut(s) 119, 428, 1090
HpyF10VI GCNNNNNNNGC 7 cut(s) 132, 302, 447, 456, 518, 581, 1087
HpyF3I CTNAG 7 cut(s) 170, 209, 476, 576, 655, 714, 1023
HpySE526I ACGT 3 cut(s) 141, 816, 1186
Hsp92II CATG 5 cut(s) 11, 160, 241, 584, 1127
HspAI GCGC 3 cut(s) 265, 448, 799
KroI GCCGGC 1 cut(s) 587
KroNI GCCGGC 1 cut(s) 589
KspAI GTTAAC 2 cut(s) 316, 919
Kzo9I GATC 4 cut(s) 11, 91, 241, 615
LguI GCTCTTC 1 cut(s) 528
LmnI GCTCC 5 cut(s) 17, 28, 528, 734, 998
Lsp1109I GCAGC 5 cut(s) 103, 113, 425, 499, 571
LweI GCATC 1 cut(s) 415
MaeI CTAG 2 cut(s) 48, 1166
MaeII ACGT 3 cut(s) 141, 816, 1186
MaeIII GTNAC 3 cut(s) 142, 883, 1038
MalI GATC 4 cut(s) 13, 93, 243, 617
MbiI CCGCTC 1 cut(s) 544
MboI GATC 4 cut(s) 11, 91, 241, 615
MboII GAAGA 4 cut(s) 515, 716, 1075, 1271
MflI RGATCY 1 cut(s) 615
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 4 cut(s) 598, 1066, 1134, 1254
MlyI GAGTC 5 cut(s) 47, 701, 865, 950, 956
MmeI TCCRAC 4 cut(s) 606, 984, 1150, 1178
MroNI GCCGGC 1 cut(s) 587
MroXI GAANNNNTTC 2 cut(s) 165, 204
MseI TTAA 6 cut(s) 258, 315, 753, 840, 918, 990
MslI CAYNNNNRTG 2 cut(s) 200, 459
MspA1I CMGCKG 1 cut(s) 116
MspI CCGG 4 cut(s) 123, 409, 588, 930
MspR9I CCNGG 4 cut(s) 123, 409, 782, 931
MvaI CCWGG 1 cut(s) 782
MvnI CGCG 2 cut(s) 267, 448
MwoI GCNNNNNNNGC 7 cut(s) 132, 302, 447, 456, 518, 581, 1087
NaeI GCCGGC 1 cut(s) 589
NciI CCSGG 3 cut(s) 123, 409, 931
NdeII GATC 4 cut(s) 11, 91, 241, 615
NgoMIV GCCGGC 1 cut(s) 587
NlaIII CATG 5 cut(s) 11, 160, 241, 584, 1127
NlaIV GGNNCC 4 cut(s) 19, 406, 898, 1129
NmeAIII GCCGAG 1 cut(s) 331
NmuCI GTSAC 3 cut(s) 142, 883, 1038
NspI RCATGY 1 cut(s) 584
PaeI GCATGC 1 cut(s) 584
PceI AGGCCT 2 cut(s) 848, 1232
PciSI GCTCTTC 1 cut(s) 528
PdiI GCCGGC 1 cut(s) 589
PdmI GAANNNNTTC 2 cut(s) 165, 204
PfeI GAWTC 7 cut(s) 4, 70, 320, 341, 347, 1144, 1178
PkrI GCNGC 9 cut(s) 115, 118, 128, 298, 301, 304, 440, 514, 586
Ple19I CGATCG 1 cut(s) 94
PleI GAGTC 5 cut(s) 46, 701, 864, 950, 956
PpsI GAGTC 5 cut(s) 46, 701, 864, 950, 956
PpuMI RGGWCCY 1 cut(s) 44
PshBI ATTAAT 1 cut(s) 840
PsiI TTATAA 1 cut(s) 390
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 780
PspGI CCWGG 1 cut(s) 780
PspN4I GGNNCC 4 cut(s) 19, 406, 898, 1129
PspPI GGNCC 4 cut(s) 44, 404, 607, 628
PspPPI RGGWCCY 1 cut(s) 44
PstI CTGCAG 1 cut(s) 1092
PsuI RGATCY 1 cut(s) 615
PvuI CGATCG 1 cut(s) 94
RsaI GTAC 7 cut(s) 251, 419, 871, 904, 950, 1097, 1189
RsaNI GTAC 7 cut(s) 250, 418, 870, 903, 949, 1096, 1188
RseI CAYNNNNRTG 2 cut(s) 200, 459
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 6 cut(s) 258, 315, 753, 840, 918, 990
SatI GCNGC 9 cut(s) 114, 117, 127, 297, 300, 303, 439, 513, 585
Sau3AI GATC 4 cut(s) 11, 91, 241, 615
Sau96I GGNCC 4 cut(s) 44, 404, 607, 628
ScaI AGTACT 2 cut(s) 904, 950
SchI GAGTC 5 cut(s) 47, 701, 865, 950, 956
ScrFI CCNGG 4 cut(s) 123, 409, 782, 931
SduI GDGCHC 1 cut(s) 197
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 1 cut(s) 1088
SinI GGWCC 2 cut(s) 44, 628
SmiMI CAYNNNNRTG 2 cut(s) 200, 459
SmlI CTYRAG 3 cut(s) 611, 789, 922
SmoI CTYRAG 3 cut(s) 611, 789, 922
SpeI ACTAGT 1 cut(s) 1165
SphI GCATGC 1 cut(s) 584
Sse9I AATT 4 cut(s) 598, 1066, 1134, 1254
SseBI AGGCCT 2 cut(s) 848, 1232
SsiI CCGC 5 cut(s) 114, 297, 300, 303, 544
SspMI CTAG 2 cut(s) 48, 1166
StuI AGGCCT 2 cut(s) 848, 1232
StyD4I CCNGG 4 cut(s) 121, 407, 780, 929
StyI CCWWGG 2 cut(s) 183, 222
TaaI ACNGT 2 cut(s) 256, 688
TaiI ACGT 3 cut(s) 144, 819, 1189
TaqI TCGA 3 cut(s) 90, 94, 954
TasI AATT 4 cut(s) 598, 1066, 1134, 1254
TatI WGTACW 4 cut(s) 869, 902, 948, 1095
TauI GCSGC 4 cut(s) 116, 299, 302, 305
TfiI GAWTC 7 cut(s) 4, 70, 320, 341, 347, 1144, 1178
Tru1I TTAA 6 cut(s) 258, 315, 753, 840, 918, 990
Tru9I TTAA 6 cut(s) 258, 315, 753, 840, 918, 990
TscAI CASTG 4 cut(s) 259, 691, 832, 1092
TseFI GTSAC 3 cut(s) 142, 883, 1038
TseI GCWGC 5 cut(s) 116, 126, 438, 512, 584
Tsp45I GTSAC 3 cut(s) 142, 883, 1038
TspDTI ATGAA 2 cut(s) 906, 932
TspGWI ACGGA 4 cut(s) 63, 161, 212, 313
TspRI CASTG 4 cut(s) 259, 691, 832, 1092
VpaK11BI GGWCC 2 cut(s) 44, 628
VspI ATTAAT 1 cut(s) 840
XapI RAATTY 1 cut(s) 1066
XceI RCATGY 1 cut(s) 584
XmiI GTMKAC 1 cut(s) 1199
XmnI GAANNNNTTC 2 cut(s) 165, 204
XspI CTAG 2 cut(s) 48, 1166
ZrmI AGTACT 2 cut(s) 904, 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.