RchiOBHm_Chr6g0246241

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000679
Physical Location & Seq
Forward (+)
1972090 .. 1978368
6279 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22072

Sequence Viewer

Length: 1242 bp
ATGCCTTATAAGGGAGGCTTTGGCCCTGGGCGGCCATACAACGACGCCGTTGAGGGCGGCCAAAAGGAAGCTCTTGCTCCGGGAGATAGACCTGCTTCAGCTCTTCGGAGCTGTAGTTCAGAGCTGTGGTGGAGACAAGAAGGTGACTTCGCCACTCATCCGTGCAGCTCAGGAGACAAAGCTGTTATCCAGCTGCTTCTGAAGACAAATATAGATGTCAATGATGCTGATGCAGATGGAAATTCTGCTCTTCATTGGATACTTGCGTCATCAATATTGTCGCATCCACAACAGATAAGTATTATATTGCTTCTTCTAGAGCATGGTGCTCTCGTAAGGCAAAGGAATAAAATGGGGTTGACAGCATTTCATATTGCTGCTGGTAATGGTAATTCAAAGGCCCTTGAGATCCTTCTGTTGGAAGACCCGTTAGCTGTCCAATATATGACGGAAATGAAAGAAACCCCCCTCTTTTTCGCTGTGAAGAATGGGAGTAAAGACTGCACTGAGCTTCTTTTAACATGGGGAGCAAATAGTGAAGTCCTTAACGTGCGTAGTGTTAATCAGGCCTTCCCCAATCAACATAAATGTACTGCCTTAGAGGTGACAGATGAAGACACCACTACTGAAAGAAATGTTAACTCAATCACCAAGGCAGAAGCTTGTAAGTACTTTGAATCTCATCAAGGATATGTCAGAGGAGTTCAGGATGGAGCATACCAGAGTCATTCTTATGCTGCGAAACAACTCAAACGCAAAATCTTTGTTGGAGGACTTCCTCCTTCAGTGGACTCTGATGTTTTGGGAAAGTTCTTTGAAGAGTTTGGATCAGTGGAAGATGCTGTAGTTATTGTAACTCAGATAGAAAAGAAGATACAATCTCAAGGCTTTGGTTTTGTCACATTTAGAGAGGAGAAATCTGCTTTAGAAGCCATGCAAGCGAACTACGTCACCATGAGAGGCAAGAAAGTTGAAATAAAAAGTTTGATTCCAAAATTGGTTTTCAGAGCTGAGTTTGAGAAAATGTCACCTCAACAACGAGAACAAGATAAAAATTTTCAACTTCCACTGCAGAAGTCGAACGAGTATATTATGGAAGGTGATAACCCTGAACAAGGTTCTTGCGCTGATAGATTAGTCCTTGGACAACCAGCGGCATGTTCCATTGAACCTCAAGCTCATGTGACCAAGAGCTCTGAGGACCCAAGCACTCCTACATGGCTAAAGGTTTTCAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

413

Amino Acids

45.64

Weight (kDa)

5.81

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 99 - 178 5.6e-11 Ankyrin repeats (3 copies)
RRM_1 PF00076 254 - 324 5.5e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 9
Acc36I ACCTGC 1 cut(s) 100
AciI CCGC 3 cut(s) 31, 57, 1154
AclWI GGATC 2 cut(s) 403, 835
AcoI YGGCCR 2 cut(s) 32, 58
AcsI RAATTY 2 cut(s) 241, 1054
AcuI CTGAAG 3 cut(s) 81, 221, 768
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 2 cut(s) 592, 671
AfiI CCNNNNNNNGG 3 cut(s) 11, 418, 1115
AgsI TTSAA 7 cut(s) 396, 677, 818, 974, 1061, 1169, 1234
AjnI CCWGG 1 cut(s) 25
AloI GAACNNNNNNTCC 2 cut(s) 100, 132
Alw21I GWGCWC 2 cut(s) 331, 1196
Alw26I GTCTC 2 cut(s) 127, 168
AlwI GGATC 2 cut(s) 403, 835
AoxI GGCC 5 cut(s) 22, 32, 58, 399, 567
ApeKI GCWGC 4 cut(s) 165, 193, 377, 737
ApoI RAATTY 2 cut(s) 241, 1054
AspLEI GCGC 1 cut(s) 1127
AspS9I GGNCC 3 cut(s) 23, 400, 1201
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 6 cut(s) 155, 616, 640, 943, 1020, 1112
AvaII GGWCC 1 cut(s) 1201
BaeI ACNNNNGTAYC 2 cut(s) 251, 284
BanII GRGCYC 1 cut(s) 1196
BbsI GAAGAC 3 cut(s) 209, 429, 621
Bbv12I GWGCWC 2 cut(s) 331, 1196
BbvI GCAGC 4 cut(s) 177, 180, 364, 724
BccI CCATC 2 cut(s) 230, 704
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 27
BciVI GTATCC 1 cut(s) 252
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 2 cut(s) 127, 168
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 3 cut(s) 112, 843, 1070
BfuAI ACCTGC 1 cut(s) 100
BfuI GTATCC 1 cut(s) 252
BisI GCNGC 7 cut(s) 32, 58, 166, 194, 378, 738, 1155
BlsI GCNGC 7 cut(s) 33, 59, 167, 195, 379, 739, 1156
BmcAI AGTACT 1 cut(s) 671
Bme1390I CCNGG 2 cut(s) 27, 81
Bme18I GGWCC 1 cut(s) 1201
BmgT120I GGNCC 3 cut(s) 23, 400, 1201
BmiI GGNNCC 1 cut(s) 1203
BmrFI CCNGG 2 cut(s) 27, 81
BmsI GCATC 4 cut(s) 214, 220, 292, 829
BpiI GAAGAC 3 cut(s) 209, 429, 621
Bpu10I CCTNAGC 1 cut(s) 169
BpuEI CTTGAG 3 cut(s) 425, 867, 1158
BpuMI CCSGG 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 4 cut(s) 25, 26, 651, 1141
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 418, 1115
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 4 cut(s) 25, 26, 651, 1141
BseGI GGATG 3 cut(s) 157, 283, 715
BseLI CCNNNNNNNGG 3 cut(s) 11, 418, 1115
BseMII CTCAG 5 cut(s) 183, 498, 872, 1002, 1188
BseRI GAGGAG 2 cut(s) 714, 926
BseXI GCAGC 4 cut(s) 177, 180, 364, 724
BsgI GTGCAG 2 cut(s) 184, 487
BshFI GGCC 5 cut(s) 24, 34, 60, 401, 569
BsiHKAI GWGCWC 2 cut(s) 331, 1196
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 3 cut(s) 11, 418, 1115
BsmAI GTCTC 2 cut(s) 127, 168
BsnI GGCC 5 cut(s) 24, 34, 60, 401, 569
Bsp1286I GDGCHC 2 cut(s) 331, 1196
Bsp143I GATC 2 cut(s) 408, 827
BspACI CCGC 3 cut(s) 31, 57, 1154
BspANI GGCC 5 cut(s) 24, 34, 60, 401, 569
BspCNI CTCAG 5 cut(s) 182, 499, 871, 1003, 1189
BspLI GGNNCC 1 cut(s) 1203
BspMAI CTGCAG 1 cut(s) 1074
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 2 cut(s) 403, 835
BspQI GCTCTTC 2 cut(s) 108, 255
BssECI CCNNGG 4 cut(s) 25, 26, 651, 1141
BssMI GATC 2 cut(s) 408, 827
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 2 cut(s) 651, 1141
Bst2UI CCWGG 1 cut(s) 27
Bst6I CTCTTC 3 cut(s) 108, 255, 813
BstACI GRCGYC 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 939
BstDEI CTNAG 6 cut(s) 169, 507, 598, 858, 1011, 1197
BstENI CCTNNNNNAGG 1 cut(s) 1113
BstF5I GGATG 3 cut(s) 157, 283, 715
BstHHI GCGC 1 cut(s) 1127
BstKTI GATC 2 cut(s) 411, 830
BstMAI GTCTC 2 cut(s) 127, 168
BstMBI GATC 2 cut(s) 408, 827
BstMWI GCNNNNNNNGC 2 cut(s) 929, 938
BstNI CCWGG 1 cut(s) 27
BstNSI RCATGY 1 cut(s) 1161
BstSCI CCNGG 2 cut(s) 25, 79
BstSFI CTRYAG 3 cut(s) 112, 843, 1070
BstV1I GCAGC 4 cut(s) 177, 180, 364, 724
BstV2I GAAGAC 3 cut(s) 209, 429, 621
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 5 cut(s) 24, 34, 60, 401, 569
BtsCI GGATG 3 cut(s) 157, 283, 715
BtsI GCAGTG 1 cut(s) 1067
BtsIMutI CAGTG 4 cut(s) 504, 792, 837, 1067
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 939
CfoI GCGC 1 cut(s) 1127
Cfr13I GGNCC 3 cut(s) 23, 400, 1201
CseI GACGC 2 cut(s) 53, 255
Csp6I GTAC 2 cut(s) 591, 670
CviAII CATG 7 cut(s) 323, 522, 934, 955, 1158, 1181, 1218
CviQI GTAC 2 cut(s) 591, 670
DdeI CTNAG 6 cut(s) 169, 507, 598, 858, 1011, 1197
DpnI GATC 2 cut(s) 410, 829
DpnII GATC 2 cut(s) 408, 827
EaeI YGGCCR 2 cut(s) 32, 58
Eam1104I CTCTTC 3 cut(s) 108, 255, 813
EarI CTCTTC 3 cut(s) 108, 255, 813
Ecl136II GAGCTC 1 cut(s) 1194
Eco130I CCWWGG 2 cut(s) 651, 1141
Eco147I AGGCCT 1 cut(s) 569
Eco24I GRGCYC 1 cut(s) 1196
Eco47I GGWCC 1 cut(s) 1201
Eco53kI GAGCTC 1 cut(s) 1194
Eco57I CTGAAG 3 cut(s) 81, 221, 768
EcoICRI GAGCTC 1 cut(s) 1194
EcoNI CCTNNNNNAGG 1 cut(s) 1113
EcoO109I RGGNCCY 2 cut(s) 400, 1201
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 2 cut(s) 651, 1141
EcoT38I GRGCYC 1 cut(s) 1196
ErhI CCWWGG 2 cut(s) 651, 1141
FaeI CATG 7 cut(s) 326, 525, 937, 958, 1161, 1184, 1221
FalI AAGNNNNNCTT 1 cut(s) 34
FatI CATG 7 cut(s) 322, 521, 933, 954, 1157, 1180, 1217
Fnu4HI GCNGC 7 cut(s) 32, 58, 166, 194, 378, 738, 1155
FokI GGATG 3 cut(s) 144, 270, 722
FriOI GRGCYC 1 cut(s) 1196
Fsp4HI GCNGC 7 cut(s) 32, 58, 166, 194, 378, 738, 1155
FspBI CTAG 1 cut(s) 317
GlaI GCGC 1 cut(s) 1126
GluI GCNGC 7 cut(s) 32, 58, 166, 194, 378, 738, 1155
HaeIII GGCC 5 cut(s) 24, 34, 60, 401, 569
HapII CCGG 1 cut(s) 80
HgaI GACGC 2 cut(s) 53, 255
HhaI GCGC 1 cut(s) 1127
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 7 cut(s) 326, 525, 937, 958, 1161, 1184, 1221
Hin6I GCGC 1 cut(s) 1125
HinP1I GCGC 1 cut(s) 1125
HincII GTYRAC 2 cut(s) 360, 640
HindII GTYRAC 2 cut(s) 360, 640
HindIII AAGCTT 1 cut(s) 660
HinfI GANTC 4 cut(s) 677, 724, 791, 988
HpaI GTTAAC 1 cut(s) 640
HpaII CCGG 1 cut(s) 80
HphI GGTGA 6 cut(s) 155, 616, 640, 943, 1020, 1112
Hpy166II GTNNAC 3 cut(s) 360, 640, 790
Hpy188I TCNGA 8 cut(s) 108, 121, 201, 698, 796, 861, 1007, 1198
Hpy188III TCNNGA 4 cut(s) 171, 317, 707, 1234
Hpy8I GTNNAC 3 cut(s) 360, 640, 790
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 5 cut(s) 134, 422, 580, 792, 1091
HpyCH4IV ACGT 2 cut(s) 549, 948
HpyCH4V TGCA 5 cut(s) 165, 233, 504, 937, 1072
HpyF10VI GCNNNNNNNGC 2 cut(s) 929, 938
HpyF3I CTNAG 6 cut(s) 169, 507, 598, 858, 1011, 1197
HpySE526I ACGT 2 cut(s) 549, 948
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 7 cut(s) 326, 525, 937, 958, 1161, 1184, 1221
HspAI GCGC 1 cut(s) 1125
KspAI GTTAAC 1 cut(s) 640
Kzo9I GATC 2 cut(s) 408, 827
LguI GCTCTTC 2 cut(s) 108, 255
LmnI GCTCC 4 cut(s) 82, 108, 527, 713
Lsp1109I GCAGC 4 cut(s) 177, 180, 364, 724
LweI GCATC 4 cut(s) 214, 220, 292, 829
MaeI CTAG 1 cut(s) 317
MaeII ACGT 2 cut(s) 549, 948
MaeIII GTNAC 7 cut(s) 143, 604, 853, 898, 949, 1026, 1183
MalI GATC 2 cut(s) 410, 829
MboI GATC 2 cut(s) 408, 827
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 2 cut(s) 331, 1196
MluCI AATT 4 cut(s) 241, 391, 995, 1054
MlyI GAGTC 2 cut(s) 733, 785
MmeI TCCRAC 2 cut(s) 399, 748
MseI TTAA 4 cut(s) 518, 546, 561, 639
MslI CAYNNNNRTG 1 cut(s) 732
MspA1I CMGCKG 2 cut(s) 193, 1154
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 2 cut(s) 27, 81
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 929, 938
NciI CCSGG 1 cut(s) 81
NdeII GATC 2 cut(s) 408, 827
NlaIII CATG 7 cut(s) 326, 525, 937, 958, 1161, 1184, 1221
NlaIV GGNNCC 1 cut(s) 1203
NmuCI GTSAC 6 cut(s) 143, 604, 898, 949, 1026, 1183
NspI RCATGY 1 cut(s) 1161
PasI CCCWGGG 1 cut(s) 26
PceI AGGCCT 1 cut(s) 569
PciSI GCTCTTC 2 cut(s) 108, 255
PfeI GAWTC 2 cut(s) 677, 988
PfoI TCCNGGA 1 cut(s) 79
PkrI GCNGC 7 cut(s) 33, 59, 167, 195, 379, 739, 1156
PleI GAGTC 2 cut(s) 732, 785
PpsI GAGTC 2 cut(s) 732, 785
PpuMI RGGWCCY 1 cut(s) 1201
PsiI TTATAA 1 cut(s) 9
Psp124BI GAGCTC 1 cut(s) 1196
Psp5II RGGWCCY 1 cut(s) 1201
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 1203
PspPI GGNCC 3 cut(s) 23, 400, 1201
PspPPI RGGWCCY 1 cut(s) 1201
PstI CTGCAG 1 cut(s) 1074
PsuI RGATCY 1 cut(s) 408
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 2 cut(s) 592, 671
RsaNI GTAC 2 cut(s) 591, 670
RseI CAYNNNNRTG 1 cut(s) 732
SacI GAGCTC 1 cut(s) 1196
SapI GCTCTTC 2 cut(s) 108, 255
SaqAI TTAA 4 cut(s) 518, 546, 561, 639
SatI GCNGC 7 cut(s) 32, 58, 166, 194, 378, 738, 1155
Sau3AI GATC 2 cut(s) 408, 827
Sau96I GGNCC 3 cut(s) 23, 400, 1201
ScaI AGTACT 1 cut(s) 671
SchI GAGTC 2 cut(s) 733, 785
ScrFI CCNGG 2 cut(s) 27, 81
SduI GDGCHC 2 cut(s) 331, 1196
SfaNI GCATC 4 cut(s) 214, 220, 292, 829
SfcI CTRYAG 3 cut(s) 112, 843, 1070
SinI GGWCC 1 cut(s) 1201
SmiMI CAYNNNNRTG 1 cut(s) 732
SmlI CTYRAG 3 cut(s) 404, 882, 1173
SmoI CTYRAG 3 cut(s) 404, 882, 1173
Sse9I AATT 4 cut(s) 241, 391, 995, 1054
SseBI AGGCCT 1 cut(s) 569
SsiI CCGC 3 cut(s) 31, 57, 1154
SspI AATATT 1 cut(s) 276
SspMI CTAG 1 cut(s) 317
SstI GAGCTC 1 cut(s) 1196
StuI AGGCCT 1 cut(s) 569
StyD4I CCNGG 2 cut(s) 25, 79
StyI CCWWGG 2 cut(s) 651, 1141
TaiI ACGT 2 cut(s) 552, 951
TaqI TCGA 1 cut(s) 1079
TasI AATT 4 cut(s) 241, 391, 995, 1054
TatI WGTACW 2 cut(s) 590, 669
TauI GCSGC 3 cut(s) 34, 60, 1157
TfiI GAWTC 2 cut(s) 677, 988
Tru1I TTAA 4 cut(s) 518, 546, 561, 639
Tru9I TTAA 4 cut(s) 518, 546, 561, 639
TscAI CASTG 4 cut(s) 511, 792, 837, 1074
TseFI GTSAC 6 cut(s) 143, 604, 898, 949, 1026, 1183
TseI GCWGC 4 cut(s) 165, 193, 377, 737
Tsp45I GTSAC 6 cut(s) 143, 604, 898, 949, 1026, 1183
TspDTI ATGAA 4 cut(s) 242, 359, 470, 627
TspGWI ACGGA 2 cut(s) 150, 464
TspRI CASTG 4 cut(s) 511, 792, 837, 1074
VpaK11BI GGWCC 1 cut(s) 1201
XagI CCTNNNNNAGG 1 cut(s) 1113
XapI RAATTY 2 cut(s) 241, 1054
XbaI TCTAGA 1 cut(s) 316
XceI RCATGY 1 cut(s) 1161
XspI CTAG 1 cut(s) 317
ZrmI AGTACT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.