RLG00000021827

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000679
Physical Location & Seq
Forward (+)
78649288 .. 78654211
4924 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021827

Sequence Viewer

Length: 975 bp
ATGCTTCGGAGGAGCCTCGGAGCTCTTCAACTCGTCTCCGAGTGTGACCAGAGCCGTCTATCTCGACGACAAGGACGAGCTCGTGGCTCAGATGAAGCGGCTCGCCGGCGACTCGCTGAACCGGGAGACGGCGTCGAAGCTCCTCCACCTCTGCTGCAAGTTCGACTCGGCGTAGTGCGCCTCTGCTCTTCTCGGCGGAGAACTCGGGACGATTCCTCTAGTGAACGAGTTGGACGACTCGGGGAGATCGCCTCTGCACACGGCGGCGTTGGCTCACTCGTCGCTGTGCGTAGATGTATTGCTGAAGAAACACGCTCGTACGGACCTGAAGACCAGGGTCGACGGATGGAAGTGTGTGCGAGTCCCAACTTCAATTTGGTAATTCACCTAAGTGAAAAGGTATTATCCAACCCATGTCTCAGATCTGCTCCTTGGGGTTTTTTGATTACGGAGTTACTCGGCGGCTTTGGGCAGCTTAGTGTGGCTTCGTGCGGCTTGTATCGACTTCGTGCGGTTTCTATCGACTACGAGCGGCTTCGTGCGGCTTCTGCCTCTCTCTCTCTCTCTCTCCCTCTCTTTCTCTCTTTCTCTCTCTCTCACACACACACACACACACTAACGCACAGGAATTGTATTTCTTCTTCTCAGCATGGCGCTCTAGTAAGCCAAAGGAATAAATTGGGGTTGACAGCATTTCATATTGCTACCAGTAATGGTAATTCTGAGGCCGTTGAGGTCCTTCTGTTGGAAGACCCAGATTCCTTCTGTTGGAAGACCCAGATGGAGTGCAGTATACGACGGAATGAAGTCCTTAATCTACGTAGGCAAAGAGCTATAGACCTGGCAACCGCTCAAGAGATGCGTCACATGTTGCTGCATCCAACCACTATTAGCCTTATTGATCATGCCTTCCCCAATCAACTTGAATGTATGGCTCTGGAGTTGGCAGATGAAGACACCACTACCAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

325

Amino Acids

35.85

Weight (kDa)

8.91

Isoelectric Point (pI)

65.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 532, 851
AccI GTMKAC 2 cut(s) 340, 793
AciI CCGC 9 cut(s) 98, 196, 264, 462, 492, 512, 532, 542, 849
AcuI CTGAAG 2 cut(s) 324, 348
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 3 cut(s) 128, 745, 768
AflIII ACRYGT 1 cut(s) 867
AgsI TTSAA 3 cut(s) 29, 373, 926
AjnI CCWGG 2 cut(s) 333, 840
AleI CACNNNNGTG 1 cut(s) 390
AluBI AGCT 5 cut(s) 23, 80, 140, 475, 833
AluI AGCT 5 cut(s) 23, 80, 140, 475, 833
Alw21I GWGCWC 2 cut(s) 25, 82
Alw26I GTCTC 3 cut(s) 40, 120, 422
Ama87I CYCGRG 2 cut(s) 204, 239
AoxI GGCC 1 cut(s) 726
ApeKI GCWGC 3 cut(s) 154, 472, 874
AspLEI GCGC 2 cut(s) 180, 656
AspS9I GGNCC 2 cut(s) 323, 736
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 377
AvaI CYCGRG 2 cut(s) 204, 239
AvaII GGWCC 2 cut(s) 323, 736
BanII GRGCYC 2 cut(s) 25, 82
BarI GAAGNNNNNNTAC 2 cut(s) 625, 657
BauI CACGAG 1 cut(s) 81
BbsI GAAGAC 4 cut(s) 336, 756, 779, 960
Bbv12I GWGCWC 2 cut(s) 25, 82
BbvI GCAGC 3 cut(s) 141, 484, 861
BccI CCATC 2 cut(s) 340, 775
BceAI ACGGC 4 cut(s) 39, 145, 277, 713
BciT130I CCWGG 2 cut(s) 335, 842
BclI TGATCA 1 cut(s) 901
BcnI CCSGG 1 cut(s) 123
BcoDI GTCTC 3 cut(s) 40, 120, 422
BfaI CTAG 2 cut(s) 219, 659
BfmI CTRYAG 1 cut(s) 834
BfoI RGCGCY 1 cut(s) 657
BglII AGATCT 1 cut(s) 422
BisI GCNGC 9 cut(s) 99, 155, 265, 463, 473, 493, 533, 543, 875
BlsI GCNGC 9 cut(s) 100, 156, 266, 464, 474, 494, 534, 544, 876
Bme1390I CCNGG 3 cut(s) 123, 335, 842
Bme18I GGWCC 2 cut(s) 323, 736
BmeT110I CYCGRG 2 cut(s) 204, 239
BmgT120I GGNCC 2 cut(s) 323, 736
BmiI GGNNCC 1 cut(s) 14
BmrFI CCNGG 3 cut(s) 123, 335, 842
BmsI GCATC 2 cut(s) 849, 886
BoxI GACNNNNGTC 1 cut(s) 336
BpiI GAAGAC 4 cut(s) 336, 756, 779, 960
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpmI CTGGAG 1 cut(s) 959
BpuEI CTTGAG 1 cut(s) 837
BpuMI CCSGG 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 821
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 3 cut(s) 16, 334, 431
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 745, 768
Bse118I RCCGGY 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 708
BseBI CCWGG 2 cut(s) 335, 842
BseDI CCNNGG 3 cut(s) 16, 334, 431
BseGI GGATG 2 cut(s) 351, 877
BseLI CCNNNNNNNGG 3 cut(s) 128, 745, 768
BseMII CTCAG 4 cut(s) 102, 433, 659, 714
BseNI ACTGG 1 cut(s) 708
BseRI GAGGAG 2 cut(s) 25, 132
BseXI GCAGC 3 cut(s) 141, 484, 861
BsgI GTGCAG 2 cut(s) 240, 808
BshFI GGCC 1 cut(s) 728
BsiHKAI GWGCWC 2 cut(s) 25, 82
BsiHKCI CYCGRG 2 cut(s) 204, 239
BsiSI CCGG 2 cut(s) 106, 122
BsiWI CGTACG 1 cut(s) 318
BslFI GGGAC 2 cut(s) 221, 348
BslI CCNNNNNNNGG 3 cut(s) 128, 745, 768
BsmAI GTCTC 3 cut(s) 40, 120, 422
BsmBI CGTCTC 2 cut(s) 40, 120
BsmFI GGGAC 2 cut(s) 221, 348
BsnI GGCC 1 cut(s) 728
BsoBI CYCGRG 2 cut(s) 204, 239
Bsp1286I GDGCHC 2 cut(s) 25, 82
Bsp143I GATC 3 cut(s) 246, 422, 901
BspACI CCGC 9 cut(s) 98, 196, 264, 462, 492, 512, 532, 542, 849
BspANI GGCC 1 cut(s) 728
BspCNI CTCAG 4 cut(s) 101, 432, 658, 715
BspLI GGNNCC 1 cut(s) 14
BspQI GCTCTTC 2 cut(s) 30, 193
BsrBI CCGCTC 2 cut(s) 532, 851
BsrFI RCCGGY 1 cut(s) 105
BsrI ACTGG 1 cut(s) 708
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 3 cut(s) 16, 334, 431
BssMI GATC 3 cut(s) 246, 422, 901
BssNAI GTATAC 1 cut(s) 794
BssNI GRCGYC 1 cut(s) 132
BssSI CACGAG 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 431
Bst1107I GTATAC 1 cut(s) 794
Bst2BI CACGAG 1 cut(s) 81
Bst2UI CCWGG 2 cut(s) 335, 842
Bst6I CTCTTC 2 cut(s) 30, 193
BstACI GRCGYC 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 821
BstC8I GCNNGC 2 cut(s) 103, 107
BstDEI CTNAG 6 cut(s) 88, 389, 419, 476, 645, 723
BstF5I GGATG 2 cut(s) 351, 877
BstH2I RGCGCY 1 cut(s) 657
BstHHI GCGC 2 cut(s) 180, 656
BstKTI GATC 3 cut(s) 249, 425, 904
BstMAI GTCTC 3 cut(s) 40, 120, 422
BstMBI GATC 3 cut(s) 246, 422, 901
BstMWI GCNNNNNNNGC 3 cut(s) 177, 270, 548
BstNI CCWGG 2 cut(s) 335, 842
BstNSI RCATGY 1 cut(s) 871
BstPAI GACNNNNGTC 1 cut(s) 336
BstSCI CCNGG 3 cut(s) 121, 333, 840
BstSFI CTRYAG 1 cut(s) 834
BstSNI TACGTA 1 cut(s) 821
BstV1I GCAGC 3 cut(s) 141, 484, 861
BstV2I GAAGAC 4 cut(s) 336, 756, 779, 960
BstX2I RGATCY 1 cut(s) 422
BstYI RGATCY 1 cut(s) 422
BstZ17I GTATAC 1 cut(s) 794
BsuRI GGCC 1 cut(s) 728
BtsCI GGATG 2 cut(s) 351, 877
Cac8I GCNNGC 2 cut(s) 103, 107
CfoI GCGC 2 cut(s) 180, 656
Cfr10I RCCGGY 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 323, 736
CseI GACGC 2 cut(s) 121, 851
Csp6I GTAC 1 cut(s) 319
CviAII CATG 4 cut(s) 414, 650, 868, 905
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 6 cut(s) 88, 389, 419, 476, 645, 723
DpnI GATC 3 cut(s) 248, 424, 903
DpnII GATC 3 cut(s) 246, 422, 901
Eam1104I CTCTTC 2 cut(s) 30, 193
EarI CTCTTC 2 cut(s) 30, 193
EciI GGCGGA 1 cut(s) 211
Ecl136II GAGCTC 2 cut(s) 23, 80
Eco105I TACGTA 1 cut(s) 821
Eco130I CCWWGG 1 cut(s) 431
Eco24I GRGCYC 2 cut(s) 25, 82
Eco47I GGWCC 2 cut(s) 323, 736
Eco53kI GAGCTC 2 cut(s) 23, 80
Eco57I CTGAAG 2 cut(s) 324, 348
Eco88I CYCGRG 2 cut(s) 204, 239
EcoICRI GAGCTC 2 cut(s) 23, 80
EcoO109I RGGNCCY 1 cut(s) 736
EcoRII CCWGG 2 cut(s) 333, 840
EcoT14I CCWWGG 1 cut(s) 431
EcoT38I GRGCYC 2 cut(s) 25, 82
ErhI CCWWGG 1 cut(s) 431
Esp3I CGTCTC 2 cut(s) 40, 120
FaeI CATG 4 cut(s) 417, 653, 871, 908
FaiI YATR 8 cut(s) 415, 651, 699, 794, 836, 869, 906, 932
FaqI GGGAC 2 cut(s) 221, 348
FatI CATG 4 cut(s) 413, 649, 867, 904
FbaI TGATCA 1 cut(s) 901
FblI GTMKAC 2 cut(s) 340, 793
Fnu4HI GCNGC 9 cut(s) 99, 155, 265, 463, 473, 493, 533, 543, 875
FokI GGATG 2 cut(s) 358, 864
FriOI GRGCYC 2 cut(s) 25, 82
Fsp4HI GCNGC 9 cut(s) 99, 155, 265, 463, 473, 493, 533, 543, 875
FspBI CTAG 2 cut(s) 219, 659
GlaI GCGC 2 cut(s) 179, 655
GluI GCNGC 9 cut(s) 99, 155, 265, 463, 473, 493, 533, 543, 875
GsuI CTGGAG 1 cut(s) 959
HaeII RGCGCY 1 cut(s) 657
HaeIII GGCC 1 cut(s) 728
HapII CCGG 2 cut(s) 106, 122
HgaI GACGC 2 cut(s) 121, 851
HhaI GCGC 2 cut(s) 180, 656
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 4 cut(s) 417, 653, 871, 908
Hin6I GCGC 2 cut(s) 178, 654
HinP1I GCGC 2 cut(s) 178, 654
HincII GTYRAC 2 cut(s) 341, 687
HindII GTYRAC 2 cut(s) 341, 687
HinfI GANTC 6 cut(s) 111, 165, 212, 237, 361, 758
HpaII CCGG 2 cut(s) 106, 122
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 4 cut(s) 224, 341, 687, 794
Hpy188I TCNGA 6 cut(s) 9, 20, 40, 91, 422, 724
Hpy188III TCNNGA 4 cut(s) 63, 206, 854, 938
Hpy8I GTNNAC 4 cut(s) 224, 341, 687, 794
Hpy99I CGWCG 5 cut(s) 69, 137, 284, 345, 801
HpyAV CCTTC 3 cut(s) 749, 772, 919
HpyCH4IV ACGT 1 cut(s) 820
HpyCH4V TGCA 4 cut(s) 157, 257, 789, 877
HpyF10VI GCNNNNNNNGC 3 cut(s) 177, 270, 548
HpyF3I CTNAG 6 cut(s) 88, 389, 419, 476, 645, 723
HpySE526I ACGT 1 cut(s) 820
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 4 cut(s) 417, 653, 871, 908
HspAI GCGC 2 cut(s) 178, 654
KroI GCCGGC 1 cut(s) 105
KroNI GCCGGC 1 cut(s) 107
Ksp22I TGATCA 1 cut(s) 901
Kzo9I GATC 3 cut(s) 246, 422, 901
LguI GCTCTTC 2 cut(s) 30, 193
LmnI GCTCC 4 cut(s) 12, 20, 145, 433
Lsp1109I GCAGC 3 cut(s) 141, 484, 861
LweI GCATC 2 cut(s) 849, 886
MaeI CTAG 2 cut(s) 219, 659
MaeII ACGT 1 cut(s) 820
MaeIII GTNAC 3 cut(s) 44, 453, 863
MalI GATC 3 cut(s) 248, 424, 903
MbiI CCGCTC 2 cut(s) 532, 851
MboI GATC 3 cut(s) 246, 422, 901
MboII GAAGA 9 cut(s) 17, 180, 317, 341, 630, 633, 761, 784, 965
MflI RGATCY 1 cut(s) 422
MhlI GDGCHC 2 cut(s) 25, 82
MluCI AATT 5 cut(s) 373, 381, 628, 677, 718
MlyI GAGTC 4 cut(s) 105, 159, 231, 370
MmeI TCCRAC 5 cut(s) 211, 432, 726, 749, 905
MreI CGCCGGCG 1 cut(s) 105
MroNI GCCGGC 1 cut(s) 105
MseI TTAA 1 cut(s) 813
MslI CAYNNNNRTG 1 cut(s) 390
MspI CCGG 2 cut(s) 106, 122
MspR9I CCNGG 3 cut(s) 123, 335, 842
MvaI CCWGG 2 cut(s) 335, 842
MwoI GCNNNNNNNGC 3 cut(s) 177, 270, 548
NaeI GCCGGC 1 cut(s) 107
NciI CCSGG 1 cut(s) 123
NdeII GATC 3 cut(s) 246, 422, 901
NgoMIV GCCGGC 1 cut(s) 105
NlaIII CATG 4 cut(s) 417, 653, 871, 908
NlaIV GGNNCC 1 cut(s) 14
NmeAIII GCCGAG 3 cut(s) 147, 172, 438
NmuCI GTSAC 2 cut(s) 44, 863
NspI RCATGY 1 cut(s) 871
OliI CACNNNNGTG 1 cut(s) 390
PciI ACATGT 1 cut(s) 867
PciSI GCTCTTC 2 cut(s) 30, 193
PcsI WCGNNNNNNNCGW 2 cut(s) 73, 232
PdiI GCCGGC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 212, 758
Pfl23II CGTACG 1 cut(s) 318
PflFI GACNNNGTC 1 cut(s) 131
PkrI GCNGC 9 cut(s) 100, 156, 266, 464, 474, 494, 534, 544, 876
PleI GAGTC 4 cut(s) 105, 159, 231, 369
PpsI GAGTC 4 cut(s) 105, 159, 231, 369
Ppu21I YACGTR 1 cut(s) 821
PpuMI RGGWCCY 1 cut(s) 736
PscI ACATGT 1 cut(s) 867
PshAI GACNNNNGTC 1 cut(s) 336
Psp124BI GAGCTC 2 cut(s) 25, 82
Psp5II RGGWCCY 1 cut(s) 736
Psp6I CCWGG 2 cut(s) 333, 840
PspGI CCWGG 2 cut(s) 333, 840
PspLI CGTACG 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 14
PspPI GGNCC 2 cut(s) 323, 736
PspPPI RGGWCCY 1 cut(s) 736
PsuI RGATCY 1 cut(s) 422
PsyI GACNNNGTC 1 cut(s) 131
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
RseI CAYNNNNRTG 1 cut(s) 390
SacI GAGCTC 2 cut(s) 25, 82
SalI GTCGAC 1 cut(s) 339
SapI GCTCTTC 2 cut(s) 30, 193
SaqAI TTAA 1 cut(s) 813
SatI GCNGC 9 cut(s) 99, 155, 265, 463, 473, 493, 533, 543, 875
Sau3AI GATC 3 cut(s) 246, 422, 901
Sau96I GGNCC 2 cut(s) 323, 736
SchI GAGTC 4 cut(s) 105, 159, 231, 370
ScrFI CCNGG 3 cut(s) 123, 335, 842
SduI GDGCHC 2 cut(s) 25, 82
SfaNI GCATC 2 cut(s) 849, 886
SfcI CTRYAG 1 cut(s) 834
SgrAI CRCCGGYG 1 cut(s) 105
SinI GGWCC 2 cut(s) 323, 736
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 852
SmoI CTYRAG 1 cut(s) 852
SnaBI TACGTA 1 cut(s) 821
Sse9I AATT 5 cut(s) 373, 381, 628, 677, 718
SsiI CCGC 9 cut(s) 98, 196, 264, 462, 492, 512, 532, 542, 849
SspMI CTAG 2 cut(s) 219, 659
SstI GAGCTC 2 cut(s) 25, 82
StyD4I CCNGG 3 cut(s) 121, 333, 840
StyI CCWWGG 1 cut(s) 431
TaiI ACGT 1 cut(s) 823
TaqI TCGA 6 cut(s) 64, 135, 163, 340, 502, 522
TasI AATT 5 cut(s) 373, 381, 628, 677, 718
TauI GCSGC 6 cut(s) 101, 267, 465, 495, 535, 545
TfiI GAWTC 2 cut(s) 212, 758
Tru1I TTAA 1 cut(s) 813
Tru9I TTAA 1 cut(s) 813
TseFI GTSAC 2 cut(s) 44, 863
TseI GCWGC 3 cut(s) 154, 472, 874
Tsp45I GTSAC 2 cut(s) 44, 863
TspDTI ATGAA 4 cut(s) 108, 686, 819, 966
TspGWI ACGGA 4 cut(s) 336, 358, 464, 814
Tth111I GACNNNGTC 1 cut(s) 131
VpaK11BI GGWCC 2 cut(s) 323, 736
XceI RCATGY 1 cut(s) 871
XcmI CCANNNNNNNNNTGG 1 cut(s) 373
XmiI GTMKAC 2 cut(s) 340, 793
XspI CTAG 2 cut(s) 219, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.