Rh6CG220500

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000679
Physical Location & Seq
Reverse (-)
36643472 .. 36667862
24391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG220500.1

Sequence Viewer

Length: 369 bp
ATGGAGATAGATTCTTGGAGTACTGGCAACAACTATAATGGGTTTTGTGTTTCAGGTAAACTGATGATAAGGGAGATGAAACTACAGATCAAGCTGGGAGTGCCTCATATACTACAACAGTCGCTTGATGTCGAGAAGGATTTGAGCACTGCGAAACTTCTGAGTGAAAAAACCAAGGAGATTGCTGACGTGGCGTACGCCTATGCCGTTCAAGGCCGAGTAGCTTCACTGACGGCACTGCTCATCGCCGCTGCCAAGAAGGTTAGCATTATTCTGTCTTGGAGTTGCGTGATTCCGAATCAGGACCAAGGAGAAGGTAACTATCTACAAAGGGCTTATAAGGGAGGCTTTGGCGTTGGGCGGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

122

Amino Acids

13.32

Weight (kDa)

8.91

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 339
AciI CCGC 2 cut(s) 249, 361
AcoI YGGCCR 1 cut(s) 362
AfaI GTAC 2 cut(s) 22, 197
AgsI TTSAA 1 cut(s) 212
AjiI CACGTC 1 cut(s) 190
AluBI AGCT 2 cut(s) 94, 224
AluI AGCT 2 cut(s) 94, 224
Alw21I GWGCWC 1 cut(s) 149
AoxI GGCC 2 cut(s) 214, 362
ApeKI GCWGC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 304
AvaII GGWCC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 238
BceAI ACGGC 3 cut(s) 191, 249, 349
BfmI CTRYAG 1 cut(s) 83
BisI GCNGC 3 cut(s) 249, 252, 362
BlsI GCNGC 3 cut(s) 250, 253, 363
BmcAI AGTACT 1 cut(s) 22
Bme18I GGWCC 1 cut(s) 304
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 304
BsaJI CCNNGG 2 cut(s) 174, 307
Bse1I ACTGG 1 cut(s) 28
BseDI CCNNGG 2 cut(s) 174, 307
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 28
BseX3I CGGCCG 1 cut(s) 362
BseXI GCAGC 1 cut(s) 238
BseYI CCCAGC 1 cut(s) 94
Bsh1285I CGRYCG 1 cut(s) 365
BshFI GGCC 2 cut(s) 216, 364
BsiEI CGRYCG 1 cut(s) 365
BsiHKAI GWGCWC 1 cut(s) 149
BsiWI CGTACG 1 cut(s) 195
BsnI GGCC 2 cut(s) 216, 364
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 2 cut(s) 249, 361
BspANI GGCC 2 cut(s) 216, 364
BspCNI CTCAG 1 cut(s) 153
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 174, 307
BssMI GATC 1 cut(s) 87
BssT1I CCWWGG 2 cut(s) 174, 307
Bst4CI ACNGT 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 161
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstMCI CGRYCG 1 cut(s) 365
BstMWI GCNNNNNNNGC 2 cut(s) 100, 191
BstSFI CTRYAG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 238
BstZI CGGCCG 1 cut(s) 362
BsuRI GGCC 2 cut(s) 216, 364
BtgZI GCGATG 1 cut(s) 229
BtrI CACGTC 1 cut(s) 190
BtsI GCAGTG 2 cut(s) 147, 236
BtsIMutI CAGTG 3 cut(s) 147, 227, 236
Cfr13I GGNCC 1 cut(s) 304
Csp6I GTAC 2 cut(s) 21, 196
CviJI RGCY 6 cut(s) 94, 216, 224, 335, 348, 364
CviKI_1 RGCY 6 cut(s) 94, 216, 224, 335, 348, 364
CviQI GTAC 2 cut(s) 21, 196
DdeI CTNAG 1 cut(s) 161
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 362
EagI CGGCCG 1 cut(s) 362
EclXI CGGCCG 1 cut(s) 362
Eco130I CCWWGG 2 cut(s) 174, 307
Eco47I GGWCC 1 cut(s) 304
Eco52I CGGCCG 1 cut(s) 362
EcoT14I CCWWGG 2 cut(s) 174, 307
ErhI CCWWGG 2 cut(s) 174, 307
FaiI YATR 5 cut(s) 36, 108, 110, 204, 339
FalI AAGNNNNNCTT 2 cut(s) 332, 364
Fnu4HI GCNGC 3 cut(s) 249, 252, 362
Fsp4HI GCNGC 3 cut(s) 249, 252, 362
GluI GCNGC 3 cut(s) 249, 252, 362
GsaI CCCAGC 1 cut(s) 98
HaeIII GGCC 2 cut(s) 216, 364
HinfI GANTC 3 cut(s) 11, 292, 298
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 162, 297
Hpy188III TCNNGA 2 cut(s) 133, 302
Hpy8I GTNNAC 1 cut(s) 59
HpyAV CCTTC 3 cut(s) 130, 253, 308
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4IV ACGT 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 191
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 189
Kzo9I GATC 1 cut(s) 87
LpnPI CCDG 4 cut(s) 9, 39, 80, 287
Lsp1109I GCAGC 1 cut(s) 238
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 317
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 149
MnlI CCTC 2 cut(s) 114, 338
MspA1I CMGCKG 1 cut(s) 251
MwoI GCNNNNNNNGC 2 cut(s) 100, 191
NdeII GATC 1 cut(s) 87
NmeAIII GCCGAG 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PfeI GAWTC 3 cut(s) 11, 292, 298
Pfl23II CGTACG 1 cut(s) 195
PkrI GCNGC 3 cut(s) 250, 253, 363
PsiI TTATAA 1 cut(s) 339
PspFI CCCAGC 1 cut(s) 94
PspLI CGTACG 1 cut(s) 195
PspPI GGNCC 1 cut(s) 304
RsaI GTAC 2 cut(s) 22, 197
RsaNI GTAC 2 cut(s) 21, 196
SatI GCNGC 3 cut(s) 249, 252, 362
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 1 cut(s) 304
ScaI AGTACT 1 cut(s) 22
SduI GDGCHC 1 cut(s) 149
SetI ASST 6 cut(s) 58, 96, 192, 226, 264, 319
SfcI CTRYAG 1 cut(s) 83
SinI GGWCC 1 cut(s) 304
SsiI CCGC 2 cut(s) 249, 361
StyI CCWWGG 2 cut(s) 174, 307
TaaI ACNGT 1 cut(s) 120
TaiI ACGT 1 cut(s) 192
TaqI TCGA 1 cut(s) 132
TatI WGTACW 1 cut(s) 20
TauI GCSGC 2 cut(s) 251, 364
TfiI GAWTC 3 cut(s) 11, 292, 298
TscAI CASTG 3 cut(s) 154, 234, 243
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 3 cut(s) 154, 234, 243
VpaK11BI GGWCC 1 cut(s) 304
ZrmI AGTACT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.