Rmu_sc0032865.1_g000001

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032865.1
OG0000679
Physical Location & Seq
Forward (+)
506 .. 1280
775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032865.1_g000001.1.cds

Sequence Viewer

Length: 693 bp
atgtcacctcaaccacaagatcaagagaagagttttcaataccagcttccactgcagaagccgaacgagaatattgtggaaggtgataaccctgaacaaagttcttgggctgatagattagtccttaaacaaccagcagattgttccattgaacctcaagcacatgttaccaagagctctgaggacccaagcactcctacatggctaaaggttttcaacaagtggtttcctgggttcttacaaggtctgtcaaagcattcaaattatgctctctcttctctaaaagctgacttcaaggctaaatttgggttagaactggatcactcatctgtgggctactctaagctcagagacttcctgaagcgtgtctctgatttatgtaccatcgaggttctccccatatgcaaacatggaactccaactcacatgatcctccgtccaaaattttctagtcctcaatgccgcctccttcctacactcagaacaactcacactgatcttcagaacctttcaactgacagcggtagtgatgagaagtgtctccaggaccttccaactgacaatgctgttgattcaaagtgccttcaggacctttcacttgattctggtggtgattcagagtgtgttggagacgaaatgtatggctcaagtgtcactagccatggggaacctcctctgggtatcctgaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

230

Amino Acids

25.51

Weight (kDa)

5.34

Isoelectric Point (pI)

62.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 463, 522
AclWI GGATC 2 cut(s) 327, 424
AcsI RAATTY 2 cut(s) 302, 443
AcuI CTGAAG 3 cut(s) 380, 485, 569
AfaI GTAC 1 cut(s) 382
AfiI CCNNNNNNNGG 1 cut(s) 677
AflIII ACRYGT 1 cut(s) 163
AgsI TTSAA 7 cut(s) 38, 152, 217, 261, 295, 513, 576
AjnI CCWGG 2 cut(s) 229, 543
AluBI AGCT 4 cut(s) 46, 177, 287, 346
AluI AGCT 4 cut(s) 46, 177, 287, 346
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 4 cut(s) 345, 373, 545, 624
AlwI GGATC 2 cut(s) 327, 424
ApoI RAATTY 2 cut(s) 302, 443
AspS9I GGNCC 3 cut(s) 184, 547, 589
AsuHPI GGTGA 2 cut(s) 95, 623
AvaII GGWCC 3 cut(s) 184, 547, 589
BanII GRGCYC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 179
BccI CCATC 1 cut(s) 392
BciT130I CCWGG 2 cut(s) 231, 545
BciVI GTATCC 1 cut(s) 692
BcoDI GTCTC 4 cut(s) 345, 373, 545, 624
BfaI CTAG 2 cut(s) 450, 657
BfmI CTRYAG 1 cut(s) 53
BfuI GTATCC 1 cut(s) 692
BisI GCNGC 1 cut(s) 463
BlsI GCNGC 1 cut(s) 464
Bme1390I CCNGG 2 cut(s) 231, 545
Bme18I GGWCC 3 cut(s) 184, 547, 589
BmgT120I GGNCC 3 cut(s) 184, 547, 589
BmiI GGNNCC 2 cut(s) 186, 669
BmrFI CCNGG 2 cut(s) 231, 545
BpmI CTGGAG 1 cut(s) 527
BpuEI CTTGAG 2 cut(s) 141, 631
BsaJI CCNNGG 2 cut(s) 230, 661
Bsc4I CCNNNNNNNGG 1 cut(s) 677
Bse1I ACTGG 1 cut(s) 321
BseBI CCWGG 2 cut(s) 231, 545
BseDI CCNNGG 2 cut(s) 230, 661
BseLI CCNNNNNNNGG 1 cut(s) 677
BseMII CTCAG 3 cut(s) 171, 361, 493
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 663
BsiHKAI GWGCWC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 677
BsmAI GTCTC 4 cut(s) 345, 373, 545, 624
BsmBI CGTCTC 1 cut(s) 624
BsmI GAATGC 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 4 cut(s) 19, 319, 429, 496
Bsp19I CCATGG 1 cut(s) 661
BspACI CCGC 2 cut(s) 463, 522
BspCNI CTCAG 3 cut(s) 172, 360, 492
BspLI GGNNCC 2 cut(s) 186, 669
BspMAI CTGCAG 1 cut(s) 57
BspPI GGATC 2 cut(s) 327, 424
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 2 cut(s) 230, 661
BssMI GATC 4 cut(s) 19, 319, 429, 496
BssT1I CCWWGG 1 cut(s) 661
Bst2UI CCWGG 2 cut(s) 231, 545
Bst6I CTCTTC 2 cut(s) 23, 280
BstDEI CTNAG 4 cut(s) 180, 342, 347, 479
BstDSI CCRYGG 1 cut(s) 661
BstKTI GATC 4 cut(s) 22, 322, 432, 499
BstMAI GTCTC 4 cut(s) 345, 373, 545, 624
BstMBI GATC 4 cut(s) 19, 319, 429, 496
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstNI CCWGG 2 cut(s) 231, 545
BstNSI RCATGY 1 cut(s) 167
BstSCI CCNGG 2 cut(s) 229, 543
BstSFI CTRYAG 1 cut(s) 53
BsuI GTATCC 1 cut(s) 692
BtgI CCRYGG 1 cut(s) 661
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 2 cut(s) 50, 492
Cfr13I GGNCC 3 cut(s) 184, 547, 589
Csp6I GTAC 1 cut(s) 381
CviAII CATG 5 cut(s) 164, 201, 410, 427, 662
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 4 cut(s) 180, 342, 347, 479
DpnI GATC 4 cut(s) 21, 321, 431, 498
DpnII GATC 4 cut(s) 19, 319, 429, 496
Eam1104I CTCTTC 2 cut(s) 23, 280
EarI CTCTTC 2 cut(s) 23, 280
Ecl136II GAGCTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 661
Eco24I GRGCYC 1 cut(s) 179
Eco47I GGWCC 3 cut(s) 184, 547, 589
Eco53kI GAGCTC 1 cut(s) 177
Eco57I CTGAAG 3 cut(s) 380, 485, 569
EcoICRI GAGCTC 1 cut(s) 177
EcoO109I RGGNCCY 3 cut(s) 184, 547, 589
EcoRII CCWGG 2 cut(s) 229, 543
EcoT14I CCWWGG 1 cut(s) 661
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 661
Esp3I CGTCTC 1 cut(s) 624
FaeI CATG 5 cut(s) 167, 204, 413, 430, 665
FatI CATG 5 cut(s) 163, 200, 409, 426, 661
FauNDI CATATG 1 cut(s) 401
Fnu4HI GCNGC 1 cut(s) 463
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 463
FspBI CTAG 2 cut(s) 450, 657
GluI GCNGC 1 cut(s) 463
GsuI CTGGAG 1 cut(s) 527
Hin1II CATG 5 cut(s) 167, 204, 413, 430, 665
HinfI GANTC 3 cut(s) 572, 602, 614
HphI GGTGA 2 cut(s) 95, 623
Hpy188I TCNGA 6 cut(s) 181, 350, 373, 482, 504, 619
Hpy188III TCNNGA 4 cut(s) 23, 358, 587, 685
HpyAV CCTTC 4 cut(s) 74, 479, 560, 593
HpyCH4V TGCA 2 cut(s) 55, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 4 cut(s) 180, 342, 347, 479
Hsp92II CATG 5 cut(s) 167, 204, 413, 430, 665
Kzo9I GATC 4 cut(s) 19, 319, 429, 496
MaeI CTAG 2 cut(s) 450, 657
MaeIII GTNAC 3 cut(s) 3, 166, 652
MalI GATC 4 cut(s) 21, 321, 431, 498
MboI GATC 4 cut(s) 19, 319, 429, 496
MboII GAAGA 3 cut(s) 40, 267, 491
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 3 cut(s) 262, 302, 443
MmeI TCCRAC 3 cut(s) 443, 578, 607
MnlI CCTC 9 cut(s) 18, 165, 175, 382, 443, 465, 476, 681, 684
MseI TTAA 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 522
MspR9I CCNGG 2 cut(s) 231, 545
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 2 cut(s) 231, 545
MwoI GCNNNNNNNGC 1 cut(s) 52
NcoI CCATGG 1 cut(s) 661
NdeI CATATG 1 cut(s) 401
NdeII GATC 4 cut(s) 19, 319, 429, 496
NlaIII CATG 5 cut(s) 167, 204, 413, 430, 665
NlaIV GGNNCC 2 cut(s) 186, 669
NmuCI GTSAC 2 cut(s) 3, 652
NspI RCATGY 1 cut(s) 167
PciI ACATGT 1 cut(s) 163
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 3 cut(s) 572, 602, 614
PfoI TCCNGGA 1 cut(s) 543
PkrI GCNGC 1 cut(s) 464
PpuMI RGGWCCY 3 cut(s) 184, 547, 589
PscI ACATGT 1 cut(s) 163
Psp124BI GAGCTC 1 cut(s) 179
Psp5II RGGWCCY 3 cut(s) 184, 547, 589
Psp6I CCWGG 2 cut(s) 229, 543
PspGI CCWGG 2 cut(s) 229, 543
PspN4I GGNNCC 2 cut(s) 186, 669
PspPI GGNCC 3 cut(s) 184, 547, 589
PspPPI RGGWCCY 3 cut(s) 184, 547, 589
PstI CTGCAG 1 cut(s) 57
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
SacI GAGCTC 1 cut(s) 179
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 463
Sau3AI GATC 4 cut(s) 19, 319, 429, 496
Sau96I GGNCC 3 cut(s) 184, 547, 589
ScrFI CCNGG 2 cut(s) 231, 545
SduI GDGCHC 1 cut(s) 179
SfcI CTRYAG 1 cut(s) 53
SinI GGWCC 3 cut(s) 184, 547, 589
SmlI CTYRAG 2 cut(s) 156, 646
SmoI CTYRAG 2 cut(s) 156, 646
Sse9I AATT 3 cut(s) 262, 302, 443
SsiI CCGC 2 cut(s) 463, 522
SspI AATATT 1 cut(s) 73
SspMI CTAG 2 cut(s) 450, 657
SstI GAGCTC 1 cut(s) 179
StyD4I CCNGG 2 cut(s) 229, 543
StyI CCWWGG 1 cut(s) 661
TaqI TCGA 1 cut(s) 387
TasI AATT 3 cut(s) 262, 302, 443
TauI GCSGC 1 cut(s) 465
TfiI GAWTC 3 cut(s) 572, 602, 614
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 2 cut(s) 57, 499
TseFI GTSAC 2 cut(s) 3, 652
Tsp45I GTSAC 2 cut(s) 3, 652
TspGWI ACGGA 1 cut(s) 425
TspRI CASTG 2 cut(s) 57, 499
VpaK11BI GGWCC 3 cut(s) 184, 547, 589
XapI RAATTY 2 cut(s) 302, 443
XceI RCATGY 1 cut(s) 167
XspI CTAG 2 cut(s) 450, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.