Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000679

Physical Location & Seq

Genomic Coordinates Forward (+)

63282157 .. 63282454

Gene Structure 298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG393400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGATTCATGGATTGGGAGCCTCGGAGGAGCTGTCCGAATCAGGTCCTAGTTCTGGAAAACTCGGGACGATTCCATTGGTAAACGAGTTCGACGACTCGGGAAAAAAACCGCTGCACCCGGCGTTGGCTCACGCGTCACGGTGTGCCGAGGATCTGAGGACCAAGGACGGTCATGAGGCGCAGCTAGCACTGGAGTTGTCGCTTAGTGAGGCTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

72

Amino Acids

7.58

Weight (kDa)

5.18

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28880
fragaria_vesca	FvH4_1g02370 FvH4_1g02370 FvH4_6g48800 FvH4_6g48800 FvH4_6g48800 FvH4_6g49030 FvH4_6g49030 FvH4_6g49030
malus_domestica	MD09G1050300.v1.1
prunus_persica	Prupe.3G268600_v2.0.a1 Prupe.3G268600_v2.0.a1 Prupe.3G268600_v2.0.a1 Prupe.3G268600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0168671 RchiOBHm_Chr2g0169051 RchiOBHm_Chr2g0170061 RchiOBHm_Chr2g0170071 RchiOBHm_Chr6g0246231 RchiOBHm_Chr6g0246241
rosa_laevigata	RLG00000015269 RLG00000021799 RLG00000021800 RLG00000021827 RLG00000021828 RLG00000035229
rosa_multiflora	Rmu_sc0002416.1_g000001 Rmu_sc0009451.1_g000006 Rmu_sc0013078.1_g000013 Rmu_sc0032865.1_g000001 Rmu_ssc0000393.1_g000027
rosa_roxburghii	Rroxscaffold_2G00081630 Rroxscaffold_2G00082770 Rroxscaffold_7G00214740
rosa_rugosa	Rorug02G0534500 Rorug02G0536600 Rorug02G0545500 Rorug02G0545500 Rorug05G0519700 Rorug05G0519800
rosa_samantha	Rh2AG605400 Rh2AG608100 Rh2AG608200 Rh2AG617600 Rh2BG618300 Rh2BG620800 Rh2BG621000 Rh2BG621100 Rh2BG629100 Rh2CG586500 Rh2CG589800 Rh2CG589900 Rh2CG598400 Rh2DG628900 Rh2DG631400 Rh2DG631600 Rh2DG631700 Rh2DG640900 Rh5AG381700 Rh5BG393400 Rh5BG393500 Rh5CG417500 Rh6AG033900 Rh6BG029100 Rh6CG029300 Rh6CG029400 Rh6CG029500 Rh6CG220500 Rh6DG028400 Rh6DG028500
rosa_wichuraiana	Rw0G009340 Rw2G050180 Rw2G050430 Rw2G051130 Rw6G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	134
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	1 cut(s)	159
AdeI	CACNNNGTG	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	53, 124
AflIII	ACRYGT	1 cut(s)	132
AluBI	AGCT	2 cut(s)	31, 184
AluI	AGCT	2 cut(s)	31, 184
AlwI	GGATC	1 cut(s)	159
Ama87I	CYCGRG	2 cut(s)	62, 97
ApeKI	GCWGC	2 cut(s)	112, 181
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	2 cut(s)	44, 159
AsuC2I	CCSGG	1 cut(s)	119
AsuNHI	GCTAGC	1 cut(s)	184
AvaI	CYCGRG	2 cut(s)	62, 97
AvaII	GGWCC	2 cut(s)	44, 159
BbvI	GCAGC	2 cut(s)	99, 193
BcnI	CCSGG	1 cut(s)	119
BfaI	CTAG	3 cut(s)	48, 185, 213
BisI	GCNGC	2 cut(s)	113, 182
BlsI	GCNGC	2 cut(s)	114, 183
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	2 cut(s)	44, 159
BmeT110I	CYCGRG	2 cut(s)	62, 97
BmgT120I	GGNCC	2 cut(s)	44, 159
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	1 cut(s)	119
BmtI	GCTAGC	1 cut(s)	188
BpmI	CTGGAG	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	21, 147, 162
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 124
Bse1I	ACTGG	1 cut(s)	195
BseDI	CCNNGG	3 cut(s)	21, 147, 162
BseLI	CCNNNNNNNGG	2 cut(s)	53, 124
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	99, 193
BsgI	GTGCAG	1 cut(s)	98
Bsh1236I	CGCG	1 cut(s)	134
BsiHKCI	CYCGRG	2 cut(s)	62, 97
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	53, 124
BsmFI	GGGAC	1 cut(s)	79
BsoBI	CYCGRG	2 cut(s)	62, 97
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	110
BspCNI	CTCAG	1 cut(s)	147
BspFNI	CGCG	1 cut(s)	134
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	3 cut(s)	21, 147, 162
BssMI	GATC	1 cut(s)	151
BssT1I	CCWWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	141, 170
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	2 cut(s)	155, 203
BstFNI	CGCG	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	2 cut(s)	99, 193
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	186
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	1 cut(s)	181
Cfr13I	GGNCC	2 cut(s)	44, 159
CseI	GACGC	1 cut(s)	123
CviAII	CATG	2 cut(s)	8, 173
CviJI	RGCY	5 cut(s)	20, 31, 128, 184, 212
CviKI_1	RGCY	5 cut(s)	20, 31, 128, 184, 212
DdeI	CTNAG	2 cut(s)	155, 203
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
DraIII	CACNNNGTG	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	162
Eco47I	GGWCC	2 cut(s)	44, 159
Eco88I	CYCGRG	2 cut(s)	62, 97
EcoO109I	RGGNCCY	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	2 cut(s)	11, 176
FaiI	YATR	2 cut(s)	9, 174
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	2 cut(s)	7, 172
Fnu4HI	GCNGC	2 cut(s)	113, 182
Fsp4HI	GCNGC	2 cut(s)	113, 182
FspBI	CTAG	3 cut(s)	48, 185, 213
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	2 cut(s)	113, 182
GsuI	CTGGAG	1 cut(s)	212
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	1 cut(s)	123
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	2 cut(s)	11, 176
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HinfI	GANTC	4 cut(s)	4, 38, 70, 95
HpaII	CCGG	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	3 cut(s)	25, 37, 156
Hpy188III	TCNNGA	4 cut(s)	54, 64, 99, 173
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	95
HpyCH4III	ACNGT	2 cut(s)	141, 170
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	2 cut(s)	155, 203
Hsp92II	CATG	2 cut(s)	11, 176
HspAI	GCGC	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	17, 28
LpnPI	CCDG	4 cut(s)	27, 39, 132, 176
Lsp1109I	GCAGC	2 cut(s)	99, 193
MaeI	CTAG	3 cut(s)	48, 185, 213
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MflI	RGATCY	1 cut(s)	151
MluI	ACGCGT	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	6 cut(s)	19, 31, 142, 150, 169, 202
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	185
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	1 cut(s)	151
NheI	GCTAGC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	11, 176
NlaIV	GGNNCC	1 cut(s)	19
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	135
PagI	TCATGA	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	4, 38, 70
PkrI	GCNGC	2 cut(s)	114, 183
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	2 cut(s)	44, 159
PspPPI	RGGWCCY	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	151
SatI	GCNGC	2 cut(s)	113, 182
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	2 cut(s)	44, 159
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	119
SetI	ASST	4 cut(s)	33, 46, 186, 218
SinI	GGWCC	2 cut(s)	44, 159
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	3 cut(s)	48, 185, 213
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	141, 170
TaqI	TCGA	1 cut(s)	90
TfiI	GAWTC	3 cut(s)	4, 38, 70
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	135
TseI	GCWGC	2 cut(s)	112, 181
Tsp45I	GTSAC	1 cut(s)	135
TspRI	CASTG	1 cut(s)	195
VpaK11BI	GGWCC	2 cut(s)	44, 159
XspI	CTAG	3 cut(s)	48, 185, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.