Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8446239.1

Orthogroup ID

OG0014727

Physical Location & Seq

Genomic Coordinates Reverse (-)

171 .. 1412

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8446239.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

atggagcctcgagtaccttgtgagcttgttaggggatacctggatttcatgccccatgcttggaatattataccagtcaagagagttgactcagctgagactcgttggatagttgatgcatgtcgtccgaatgacatgagaaaggaaacagatcctgaatattattgtaggtatattcctatgacacggatcaaagttcctctttctggaagcaactttggttgttctttgccacattctttgccctcttttgatggaactctgaacaaatctggcagttctctcattcagtgcaaatatggatcagttgagttagcagcaaaaatgcgtactttggaggtagatgggacttcaggggatgatgttaggaagttcgagtacaactgcttaggggaagtaagaatgttaagtgctttgcaccacccctgcatagtagagttgtatggacatcagatatcatccaagtgggctccttcagtgaatggcactcctggctcccgtactttgcaatcagcaattttcatggagtacataaatgggggttccttaaagagttacatagaaaagctatcaaaagctggtgagaagcatgtccctgtgcatttagctgtttgcattgctaaaaatgttgcttctgcactggtggagctgcattcaaagaatgtcattcatcgagacatcaaaagtgagaacattttgattgatttgaatagcaagacagctgatggtacccctgttgtgaagctctgtgattttgatagagcggtgcctcttcagtcgtacttgcattcctgccttgtcgctcatgtaggaatacctcctcctaatgtttgtgttggaacacctcgctggatggctccagaggttctgagaacaatgcatgagcaaaatatttatggactggaagttgacatctggtcatttggatgccttctttccgaattgttgactttgcaacttccttactccggagtagctgatttggagatacatgaccttattgtgacaggacaacgacccaagttaacagatgagttggaggcgcttctgctatttacggacgagccagtggctcgatcagctggagagcttgggggaacagaggctgacttagacacactaacatttcttgctgacttgttctgcaaatgtactgaggagaatccgcagagtcgtccaacagctgagaacatctataaattgttgctcgaacacagcatgcagcttacaaactctagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EDR1 LRR_8 Pkinase

Protein Analysis

413

Amino Acids

45.85

Weight (kDa)

5.63

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014727)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29700
rosa_chinensis	RchiOBHm_Chr4g0437941
rosa_laevigata	RLG00000006400
rosa_multiflora	Rmu_co8239215.1_g000001 Rmu_co8446239.1_g000001 Rmu_sc0025141.1_g000002 Rmu_sc0028618.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379100
rosa_rugosa	Rorug04G0305700
rosa_samantha	Rh4AG346600 Rh4AG357300 Rh4BG368200 Rh4CG382300 Rh4DG349200 Rh4DG363100
rosa_wichuraiana	Rw0G011540 Rw0G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	728
AccB1I	GGYRCC	2 cut(s)	728, 766
AccBSI	CCGCTC	1 cut(s)	764
AccIII	TCCGGA	1 cut(s)	968
AciI	CCGC	2 cut(s)	764, 1166
AclWI	GGATC	3 cut(s)	146, 197, 310
AcuI	CTGAAG	3 cut(s)	336, 459, 758
AfaI	GTAC	8 cut(s)	15, 331, 380, 502, 530, 730, 782, 1153
AfiI	CCNNNNNNNGG	3 cut(s)	60, 206, 968
AgsI	TTSAA	2 cut(s)	657, 709
AhdI	GACNNNNNGTC	1 cut(s)	916
AjnI	CCWGG	2 cut(s)	39, 490
Alw26I	GTCTC	2 cut(s)	92, 669
AlwI	GGATC	3 cut(s)	146, 197, 310
AlwNI	CAGNNNCTG	2 cut(s)	155, 1106
Ama87I	CYCGRG	1 cut(s)	9
Aor13HI	TCCGGA	1 cut(s)	968
ApeKI	GCWGC	3 cut(s)	317, 649, 1222
Asp718I	GGTACC	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	1045
AsuHPI	GGTGA	1 cut(s)	593
AvaI	CYCGRG	1 cut(s)	9
BaeI	ACNNNNGTAYC	2 cut(s)	720, 753
BanI	GGYRCC	2 cut(s)	728, 766
BanII	GRGCYC	1 cut(s)	472
BarI	GAAGNNNNNNTAC	2 cut(s)	362, 394
BbvI	GCAGC	3 cut(s)	329, 636, 1234
BccI	CCATC	4 cut(s)	248, 338, 719, 847
BciT130I	CCWGG	2 cut(s)	41, 492
BciVI	GTATCC	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	92, 669
BfaI	CTAG	1 cut(s)	1236
BfoI	RGCGCY	1 cut(s)	1046
BfuI	GTATCC	1 cut(s)	29
BisI	GCNGC	3 cut(s)	318, 650, 1223
BlsI	GCNGC	3 cut(s)	319, 651, 1224
Bme1390I	CCNGG	2 cut(s)	41, 492
BmeRI	GACNNNNNGTC	1 cut(s)	916
BmeT110I	CYCGRG	1 cut(s)	9
BmiI	GGNNCC	7 cut(s)	6, 471, 496, 544, 730, 768, 858
BmrFI	CCNGG	2 cut(s)	41, 492
BmsI	GCATC	2 cut(s)	106, 917
BpmI	CTGGAG	2 cut(s)	843, 1104
Bpu10I	CCTNAGC	1 cut(s)	388
BsaWI	WCCGGW	1 cut(s)	968
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 206, 968
Bse1I	ACTGG	4 cut(s)	74, 645, 906, 1067
Bse3DI	GCAATG	1 cut(s)	615
BseAI	TCCGGA	1 cut(s)	968
BseBI	CCWGG	2 cut(s)	41, 492
BseGI	GGATG	4 cut(s)	364, 458, 858, 932
BseLI	CCNNNNNNNGG	3 cut(s)	60, 206, 968
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	5 cut(s)	87, 105, 860, 1146, 1176
BseNI	ACTGG	4 cut(s)	74, 645, 906, 1067
BseRI	GAGGAG	2 cut(s)	810, 1172
BseXI	GCAGC	3 cut(s)	329, 636, 1234
BsgI	GTGCAG	1 cut(s)	621
BshNI	GGYRCC	2 cut(s)	728, 766
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	969
BslFI	GGGAC	2 cut(s)	361, 578
BslI	CCNNNNNNNGG	3 cut(s)	60, 206, 968
BsmAI	GTCTC	2 cut(s)	92, 669
BsmFI	GGGAC	2 cut(s)	361, 578
BsmI	GAATGC	2 cut(s)	652, 787
BsoBI	CYCGRG	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp13I	TCCGGA	1 cut(s)	968
Bsp143I	GATC	4 cut(s)	151, 189, 302, 1076
BspACI	CCGC	2 cut(s)	764, 1166
BspCNI	CTCAG	5 cut(s)	88, 104, 861, 1147, 1177
BspEI	TCCGGA	1 cut(s)	968
BspLI	GGNNCC	7 cut(s)	6, 471, 496, 544, 730, 768, 858
BspPI	GGATC	3 cut(s)	146, 197, 310
BspT107I	GGYRCC	2 cut(s)	728, 766
BsrBI	CCGCTC	1 cut(s)	764
BsrDI	GCAATG	1 cut(s)	615
BsrI	ACTGG	4 cut(s)	74, 645, 906, 1067
BssMI	GATC	4 cut(s)	151, 189, 302, 1076
Bst2UI	CCWGG	2 cut(s)	41, 492
Bst6I	CTCTTC	1 cut(s)	777
BstC8I	GCNNGC	1 cut(s)	1220
BstDEI	CTNAG	7 cut(s)	91, 96, 388, 869, 1111, 1155, 1185
BstF5I	GGATG	4 cut(s)	364, 458, 858, 932
BstH2I	RGCGCY	1 cut(s)	1046
BstHHI	GCGC	1 cut(s)	1045
BstKTI	GATC	4 cut(s)	154, 192, 305, 1079
BstMAI	GTCTC	2 cut(s)	92, 669
BstMBI	GATC	4 cut(s)	151, 189, 302, 1076
BstMWI	GCNNNNNNNGC	2 cut(s)	492, 1079
BstNI	CCWGG	2 cut(s)	41, 492
BstNSI	RCATGY	3 cut(s)	123, 593, 1222
BstSCI	CCNGG	2 cut(s)	39, 490
BstV1I	GCAGC	3 cut(s)	329, 636, 1234
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuI	GTATCC	1 cut(s)	29
BtsCI	GGATG	4 cut(s)	364, 458, 858, 932
BtsIMutI	CAGTG	4 cut(s)	296, 483, 638, 1074
Cac8I	GCNNGC	1 cut(s)	1220
CaiI	CAGNNNCTG	2 cut(s)	155, 1106
CfoI	GCGC	1 cut(s)	1045
Csp6I	GTAC	8 cut(s)	14, 330, 379, 501, 529, 729, 781, 1152
CspCI	CAANNNNNGTGG	2 cut(s)	222, 257
CviQI	GTAC	8 cut(s)	14, 330, 379, 501, 529, 729, 781, 1152
DdeI	CTNAG	7 cut(s)	91, 96, 388, 869, 1111, 1155, 1185
DpnI	GATC	4 cut(s)	153, 191, 304, 1078
DpnII	GATC	4 cut(s)	151, 189, 302, 1076
DriI	GACNNNNNGTC	1 cut(s)	916
Eam1104I	CTCTTC	1 cut(s)	777
Eam1105I	GACNNNNNGTC	1 cut(s)	916
EarI	CTCTTC	1 cut(s)	777
Eco24I	GRGCYC	1 cut(s)	472
Eco32I	GATATC	1 cut(s)	456
Eco57I	CTGAAG	3 cut(s)	336, 459, 758
Eco88I	CYCGRG	1 cut(s)	9
EcoRII	CCWGG	2 cut(s)	39, 490
EcoRV	GATATC	1 cut(s)	456
EcoT22I	ATGCAT	2 cut(s)	121, 882
EcoT38I	GRGCYC	1 cut(s)	472
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FaqI	GGGAC	2 cut(s)	361, 578
Fnu4HI	GCNGC	3 cut(s)	318, 650, 1223
FokI	GGATG	4 cut(s)	371, 445, 865, 939
FriOI	GRGCYC	1 cut(s)	472
Fsp4HI	GCNGC	3 cut(s)	318, 650, 1223
FspBI	CTAG	1 cut(s)	1236
GlaI	GCGC	1 cut(s)	1044
GluI	GCNGC	3 cut(s)	318, 650, 1223
GsuI	CTGGAG	2 cut(s)	843, 1104
HaeII	RGCGCY	1 cut(s)	1046
HapII	CCGG	1 cut(s)	969
HhaI	GCGC	1 cut(s)	1045
Hin6I	GCGC	1 cut(s)	1043
HinP1I	GCGC	1 cut(s)	1043
HincII	GTYRAC	4 cut(s)	88, 910, 948, 1026
HindII	GTYRAC	4 cut(s)	88, 910, 948, 1026
HinfI	GANTC	4 cut(s)	89, 100, 1162, 1171
HpaI	GTTAAC	1 cut(s)	1026
HpaII	CCGG	1 cut(s)	969
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	4 cut(s)	88, 910, 948, 1026
Hpy188I	TCNGA	5 cut(s)	129, 264, 453, 870, 940
Hpy188III	TCNNGA	6 cut(s)	79, 155, 207, 674, 860, 969
Hpy8I	GTNNAC	4 cut(s)	88, 910, 948, 1026
HpyAV	CCTTC	2 cut(s)	483, 941
HpyF10VI	GCNNNNNNNGC	2 cut(s)	492, 1079
HpyF3I	CTNAG	7 cut(s)	91, 96, 388, 869, 1111, 1155, 1185
HspAI	GCGC	1 cut(s)	1043
Kpn2I	TCCGGA	1 cut(s)	968
KpnI	GGTACC	1 cut(s)	732
KspAI	GTTAAC	1 cut(s)	1026
Kzo9I	GATC	4 cut(s)	151, 189, 302, 1076
LmnI	GCTCC	5 cut(s)	4, 475, 500, 646, 862
Lsp1109I	GCAGC	3 cut(s)	329, 636, 1234
LweI	GCATC	2 cut(s)	106, 917
MaeI	CTAG	1 cut(s)	1236
MaeIII	GTNAC	2 cut(s)	554, 1003
MalI	GATC	4 cut(s)	153, 191, 304, 1078
MbiI	CCGCTC	1 cut(s)	764
MboI	GATC	4 cut(s)	151, 189, 302, 1076
MboII	GAAGA	1 cut(s)	764
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	3 cut(s)	516, 941, 1199
MlyI	GAGTC	3 cut(s)	83, 94, 1180
MmeI	TCCRAC	4 cut(s)	86, 817, 1017, 1202
Mph1103I	ATGCAT	2 cut(s)	121, 882
MroI	TCCGGA	1 cut(s)	968
MseI	TTAA	3 cut(s)	407, 548, 1025
MslI	CAYNNNNRTG	2 cut(s)	463, 925
MspA1I	CMGCKG	4 cut(s)	95, 722, 1082, 1184
MspI	CCGG	1 cut(s)	969
MspR9I	CCNGG	2 cut(s)	41, 492
Mva1269I	GAATGC	2 cut(s)	652, 787
MvaI	CCWGG	2 cut(s)	41, 492
MwoI	GCNNNNNNNGC	2 cut(s)	492, 1079
NdeII	GATC	4 cut(s)	151, 189, 302, 1076
NlaIV	GGNNCC	7 cut(s)	6, 471, 496, 544, 730, 768, 858
NmuCI	GTSAC	1 cut(s)	1003
NsiI	ATGCAT	2 cut(s)	121, 882
NspI	RCATGY	3 cut(s)	123, 593, 1222
PaeI	GCATGC	1 cut(s)	1222
PaeR7I	CTCGAG	1 cut(s)	9
PctI	GAATGC	2 cut(s)	652, 787
PfeI	GAWTC	1 cut(s)	1162
PkrI	GCNGC	3 cut(s)	319, 651, 1224
PleI	GAGTC	3 cut(s)	83, 94, 1179
PpsI	GAGTC	3 cut(s)	83, 94, 1179
Psp6I	CCWGG	2 cut(s)	39, 490
PspGI	CCWGG	2 cut(s)	39, 490
PspN4I	GGNNCC	7 cut(s)	6, 471, 496, 544, 730, 768, 858
PspXI	VCTCGAGB	1 cut(s)	9
PstNI	CAGNNNCTG	2 cut(s)	155, 1106
PsuI	RGATCY	1 cut(s)	151
PvuII	CAGCTG	4 cut(s)	95, 722, 1082, 1184
RsaI	GTAC	8 cut(s)	15, 331, 380, 502, 530, 730, 782, 1153
RsaNI	GTAC	8 cut(s)	14, 330, 379, 501, 529, 729, 781, 1152
RseI	CAYNNNNRTG	2 cut(s)	463, 925
SaqAI	TTAA	3 cut(s)	407, 548, 1025
SatI	GCNGC	3 cut(s)	318, 650, 1223
Sau3AI	GATC	4 cut(s)	151, 189, 302, 1076
SchI	GAGTC	3 cut(s)	83, 94, 1180
ScrFI	CCNGG	2 cut(s)	41, 492
SduI	GDGCHC	1 cut(s)	472
SfaNI	GCATC	2 cut(s)	106, 917
Sfr274I	CTCGAG	1 cut(s)	9
SlaI	CTCGAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	2 cut(s)	463, 925
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
SphI	GCATGC	1 cut(s)	1222
Sse9I	AATT	3 cut(s)	516, 941, 1199
SsiI	CCGC	2 cut(s)	764, 1166
SspI	AATATT	3 cut(s)	67, 161, 892
SspMI	CTAG	1 cut(s)	1236
StyD4I	CCNGG	2 cut(s)	39, 490
TaqI	TCGA	5 cut(s)	10, 375, 673, 1075, 1209
TasI	AATT	3 cut(s)	516, 941, 1199
TatI	WGTACW	3 cut(s)	378, 528, 1151
TfiI	GAWTC	1 cut(s)	1162
Tru1I	TTAA	3 cut(s)	407, 548, 1025
Tru9I	TTAA	3 cut(s)	407, 548, 1025
TscAI	CASTG	4 cut(s)	296, 483, 645, 1074
TseFI	GTSAC	1 cut(s)	1003
TseI	GCWGC	3 cut(s)	317, 649, 1222
Tsp45I	GTSAC	1 cut(s)	1003
TspDTI	ATGAA	3 cut(s)	37, 511, 659
TspGWI	ACGGA	2 cut(s)	202, 1073
TspRI	CASTG	4 cut(s)	296, 483, 645, 1074
XceI	RCATGY	3 cut(s)	123, 593, 1222
XhoI	CTCGAG	1 cut(s)	9
XspI	CTAG	1 cut(s)	1236
Zsp2I	ATGCAT	2 cut(s)	121, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.