Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028618.1

Orthogroup ID

OG0014727

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 694

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028618.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgaagactttgccgggagaaattggcaatttgaatgctctggtgtcgttgagagttgccaataataaattggaggaattgcctgagggtttgtccagattagctaggttggagaacctggacttgtcgcataataggctgacgtcattgggggttgttgattttgggttgatgcttagcctccggaatttgaatctcaagtacaataggctttcgagtgagtgtgtagtgccttcgtggatatgctgcgatttggatgggaatggaaatgataagtctggcagttcttcagtcgagttggattgctcagccaatgtaattagtgtgtctagtaaatcgagaagtaggtttctagcaagttggaggtcggatgggaggaagtgttattttcggtggagagctccaggatgcgtaaataaaggcaggatgcccatgccgatgcgtgtgaaggaagatggagaaagcaaaacagaaaatgtagatgttactgattctgcagtagatgaggatgagaataaggatgaaggtttagtatctcgagaagctgaaatttgtttgtttgttgactctactgcagtagatgaaggtgataaaaaagattgtgaggttgaagtatcctcaaacagtcaagaggttgctggtgagcaagatgaagcattatggtcagaaatgttaaaagccacttccggatcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EDR1 LRR_8 Pkinase

Protein Analysis

231

Amino Acids

25.38

Weight (kDa)

4.71

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014727)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29700
rosa_chinensis	RchiOBHm_Chr4g0437941
rosa_laevigata	RLG00000006400
rosa_multiflora	Rmu_co8239215.1_g000001 Rmu_co8446239.1_g000001 Rmu_sc0025141.1_g000002 Rmu_sc0028618.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379100
rosa_rugosa	Rorug04G0305700
rosa_samantha	Rh4AG346600 Rh4AG357300 Rh4BG368200 Rh4CG382300 Rh4DG349200 Rh4DG363100
rosa_wichuraiana	Rw0G011540 Rw0G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	146
AccIII	TCCGGA	2 cut(s)	183, 686
AclWI	GGATC	1 cut(s)	684
AcsI	RAATTY	2 cut(s)	187, 549
AcuI	CTGAAG	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	34, 193, 611
AjnI	CCWGG	2 cut(s)	117, 403
AluBI	AGCT	3 cut(s)	104, 401, 545
AluI	AGCT	3 cut(s)	104, 401, 545
Alw21I	GWGCWC	1 cut(s)	403
AlwI	GGATC	1 cut(s)	684
Ama87I	CYCGRG	1 cut(s)	537
Aor13HI	TCCGGA	2 cut(s)	183, 686
ApeKI	GCWGC	1 cut(s)	246
ApoI	RAATTY	2 cut(s)	187, 549
AsuC2I	CCSGG	1 cut(s)	15
AsuHPI	GGTGA	2 cut(s)	599, 653
AvaI	CYCGRG	1 cut(s)	537
AxyI	CCTNAGG	1 cut(s)	84
BamHI	GGATCC	1 cut(s)	689
BanII	GRGCYC	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	3 cut(s)	251, 365, 449
BciT130I	CCWGG	2 cut(s)	119, 405
BciVI	GTATCC	1 cut(s)	625
BcnI	CCSGG	1 cut(s)	15
BfaI	CTAG	3 cut(s)	105, 330, 353
BfmI	CTRYAG	2 cut(s)	495, 573
BfuI	GTATCC	1 cut(s)	625
BisI	GCNGC	1 cut(s)	247
BlpI	GCTNAGC	2 cut(s)	176, 307
BlsI	GCNGC	1 cut(s)	248
Bme1390I	CCNGG	3 cut(s)	15, 119, 405
BmeT110I	CYCGRG	1 cut(s)	537
BmiI	GGNNCC	1 cut(s)	691
BmrFI	CCNGG	3 cut(s)	15, 119, 405
BmsI	GCATC	4 cut(s)	162, 398, 417, 429
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	387
Bpu1102I	GCTNAGC	2 cut(s)	176, 307
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	143
BsaWI	WCCGGW	2 cut(s)	183, 686
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bse21I	CCTNAGG	1 cut(s)	84
BseAI	TCCGGA	2 cut(s)	183, 686
BseBI	CCWGG	2 cut(s)	119, 405
BseGI	GGATG	6 cut(s)	262, 376, 413, 432, 514, 526
BseMII	CTCAG	2 cut(s)	75, 321
BseXI	GCAGC	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	537
BsiSI	CCGG	3 cut(s)	14, 184, 687
BsmI	GAATGC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	537
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp13I	TCCGGA	2 cut(s)	183, 686
Bsp143I	GATC	1 cut(s)	689
Bsp1720I	GCTNAGC	2 cut(s)	176, 307
BspCNI	CTCAG	2 cut(s)	76, 320
BspEI	TCCGGA	2 cut(s)	183, 686
BspLI	GGNNCC	1 cut(s)	691
BspMAI	CTGCAG	2 cut(s)	499, 577
BspPI	GGATC	1 cut(s)	684
BssMI	GATC	1 cut(s)	689
BssNI	GRCGYC	1 cut(s)	143
Bst2UI	CCWGG	2 cut(s)	119, 405
Bst4CI	ACNGT	1 cut(s)	626
BstACI	GRCGYC	1 cut(s)	143
BstDEI	CTNAG	3 cut(s)	84, 176, 307
BstF5I	GGATG	6 cut(s)	262, 376, 413, 432, 514, 526
BstKTI	GATC	1 cut(s)	692
BstMBI	GATC	1 cut(s)	689
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNI	CCWGG	2 cut(s)	119, 405
BstSCI	CCNGG	3 cut(s)	13, 117, 403
BstSFI	CTRYAG	2 cut(s)	495, 573
BstV1I	GCAGC	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	689
Bsu36I	CCTNAGG	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	625
BtsCI	GGATG	6 cut(s)	262, 376, 413, 432, 514, 526
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	433
CviJI	RGCY	8 cut(s)	104, 139, 180, 211, 311, 401, 545, 680
CviKI_1	RGCY	8 cut(s)	104, 139, 180, 211, 311, 401, 545, 680
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	3 cut(s)	84, 176, 307
DpnI	GATC	1 cut(s)	691
DpnII	GATC	1 cut(s)	689
Ecl136II	GAGCTC	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	403
Eco53kI	GAGCTC	1 cut(s)	401
Eco57I	CTGAAG	1 cut(s)	273
Eco81I	CCTNAGG	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	537
EcoICRI	GAGCTC	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	117, 403
EcoT38I	GRGCYC	1 cut(s)	403
FaeI	CATG	1 cut(s)	436
FaiI	YATR	4 cut(s)	132, 244, 434, 661
FatI	CATG	1 cut(s)	432
Fnu4HI	GCNGC	1 cut(s)	247
FokI	GGATG	6 cut(s)	269, 383, 420, 439, 521, 533
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	1 cut(s)	247
FspBI	CTAG	3 cut(s)	105, 330, 353
GluI	GCNGC	1 cut(s)	247
GsuI	CTGGAG	1 cut(s)	387
HapII	CCGG	3 cut(s)	14, 184, 687
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	436
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	3 cut(s)	193, 491, 566
HpaII	CCGG	3 cut(s)	14, 184, 687
HphI	GGTGA	2 cut(s)	599, 653
Hpy166II	GTNNAC	1 cut(s)	565
Hpy188I	TCNGA	2 cut(s)	370, 667
Hpy188III	TCNNGA	7 cut(s)	96, 184, 339, 537, 539, 629, 687
Hpy8I	GTNNAC	1 cut(s)	565
HpyAV	CCTTC	4 cut(s)	243, 442, 518, 578
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	2 cut(s)	497, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	3 cut(s)	84, 176, 307
HpySE526I	ACGT	1 cut(s)	143
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	1 cut(s)	436
Kpn2I	TCCGGA	2 cut(s)	183, 686
Kzo9I	GATC	1 cut(s)	689
LmnI	GCTCC	1 cut(s)	406
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	4 cut(s)	162, 398, 417, 429
MaeI	CTAG	3 cut(s)	105, 330, 353
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	1 cut(s)	691
MboI	GATC	1 cut(s)	689
MboII	GAAGA	3 cut(s)	16, 279, 464
MflI	RGATCY	1 cut(s)	689
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	7 cut(s)	21, 28, 68, 77, 187, 318, 549
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	4 cut(s)	90, 279, 341, 348
MnlI	CCTC	9 cut(s)	67, 79, 191, 357, 369, 499, 598, 625, 628
MroI	TCCGGA	2 cut(s)	183, 686
MseI	TTAA	1 cut(s)	674
MslI	CAYNNNNRTG	1 cut(s)	437
MspI	CCGG	3 cut(s)	14, 184, 687
MspR9I	CCNGG	3 cut(s)	15, 119, 405
Mva1269I	GAATGC	1 cut(s)	40
MvaI	CCWGG	2 cut(s)	119, 405
MwoI	GCNNNNNNNGC	1 cut(s)	136
NciI	CCSGG	1 cut(s)	15
NdeII	GATC	1 cut(s)	689
NlaIII	CATG	1 cut(s)	436
NlaIV	GGNNCC	1 cut(s)	691
PaeR7I	CTCGAG	1 cut(s)	537
PctI	GAATGC	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	193, 491
PfoI	TCCNGGA	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	248
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
Psp124BI	GAGCTC	1 cut(s)	403
Psp6I	CCWGG	2 cut(s)	117, 403
PspGI	CCWGG	2 cut(s)	117, 403
PspN4I	GGNNCC	1 cut(s)	691
PstI	CTGCAG	2 cut(s)	499, 577
PsuI	RGATCY	1 cut(s)	689
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	437
SacI	GAGCTC	1 cut(s)	403
SaqAI	TTAA	1 cut(s)	674
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	1 cut(s)	689
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	3 cut(s)	15, 119, 405
SduI	GDGCHC	1 cut(s)	403
SfaNI	GCATC	4 cut(s)	162, 398, 417, 429
SfcI	CTRYAG	2 cut(s)	495, 573
Sfr274I	CTCGAG	1 cut(s)	537
SlaI	CTCGAG	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	2 cut(s)	197, 537
SmoI	CTYRAG	2 cut(s)	197, 537
Sse9I	AATT	7 cut(s)	21, 28, 68, 77, 187, 318, 549
SspMI	CTAG	3 cut(s)	105, 330, 353
SstI	GAGCTC	1 cut(s)	403
StyD4I	CCNGG	3 cut(s)	13, 117, 403
TaaI	ACNGT	1 cut(s)	626
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	4 cut(s)	215, 294, 338, 538
TasI	AATT	7 cut(s)	21, 28, 68, 77, 187, 318, 549
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	193, 491
Tru1I	TTAA	1 cut(s)	674
Tru9I	TTAA	1 cut(s)	674
TseI	GCWGC	1 cut(s)	246
TspDTI	ATGAA	4 cut(s)	17, 537, 597, 666
XapI	RAATTY	2 cut(s)	187, 549
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XhoI	CTCGAG	1 cut(s)	537
XspI	CTAG	3 cut(s)	105, 330, 353
ZraI	GACGTC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.