Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8469003.1

Orthogroup ID

OG0003941

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1944

Gene Structure 1944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8469003.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

gttattgtacctgatggtattcacttcgaagattctgatactacggtgtttattgatgagaaagttgacagaagtatcaaagggaagacaataaattactcttccgatgagttccctgatcgtaaagctaagggagctgtcgccaataactttgctggttcttctggtaagagtttagcctcagcatcggataacattaactatgctgatctgtttttggatgatgttatcgatgtcgatgagtatgcccgtttgctatcccattttgataatgcggatatttctcctggaatagaagcacctatgccacctatcccctggttgtttggtcctgttaaaagtgatataaagtcagtttctggaagtagttctgatacaaattatcgagctgctaagagttttgcgtcactctcgcataatgtaattgacttagctggtcccagttctgatgcatctagttccaatgatgactattctggtctttatttggaagcgtccatagatatcgatgagtatgctgaaatgctagcccattttgacaaaatggatattcctcctggaatagaagcacctatcccacattttctgtcattgtcagatccttctaagagcaatataaatgcagttcctggaagtagttcaagcttggaggcccaaacaaatgtttttagtcctgctcttgggctatcatcatcttggaaacttccacaagcttccagcagtaaaacaaaacaatcttatctgcaacaccaagggtgggcttctaatattccagttggagtagaattatcaaaattgcatacacaaactcaaaccaatgatgtccctgcaaagcaagtttctagcatggagacagatgaaactattaggaagttcaaggatttcaaacaatttgatacagttgcagatcactcagaccatcactatactaacaagagtagttctaccatgcagaaaaattgggcaaagagaattcaggaagagtggaaaatcctggagaaagatttgcctgatacaatatttgttagagtttatgagacaaggatggatcttttgagagctgtaattgttggagccaagggtaccccctaccatgatggtctctttttctttgatgtttcatttccaagtgactatcccaatgtacccccgtctgatttaggacttggtaatgccagcatgtctactaccactctggtggccttcgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

403

Amino Acids

44.08

Weight (kDa)

4.75

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003941)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020
rosa_chinensis	RchiOBHm_Chr5g0033801 RchiOBHm_Chr5g0033811
rosa_laevigata	RLG00000033502 RLG00000033503
rosa_multiflora	Rmu_co8469003.1_g000001 Rmu_sc0001768.1_g000051 Rmu_sc0001768.1_g000056 Rmu_sc0001768.1_g000059
rosa_roxburghii	Rroxscaffold_1G00046360 Rroxscaffold_1G00046380
rosa_rugosa	Rorug05G0142100 Rorug05G0142100 Rorug05G0142100 Rorug05G0142200 Rorug05G0142400 Rorug05G0142500
rosa_samantha	Rh5AG233300 Rh5AG233400 Rh5BG233800 Rh5BG233900 Rh5CG263700 Rh5CG264000 Rh5DG240700 Rh5DG240800
rosa_wichuraiana	Rw5G021570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1082
AccB1I	GGYRCC	1 cut(s)	1082
AccI	GTMKAC	1 cut(s)	1184
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	2 cut(s)	593, 1056
AcsI	RAATTY	1 cut(s)	972
AfaI	GTAC	3 cut(s)	9, 1084, 1146
AfiI	CCNNNNNNNGG	2 cut(s)	680, 757
AgsI	TTSAA	3 cut(s)	642, 877, 886
AjnI	CCWGG	5 cut(s)	286, 317, 556, 628, 993
AleI	CACNNNNGTG	1 cut(s)	1196
AluBI	AGCT	7 cut(s)	128, 137, 389, 434, 645, 713, 1061
AluI	AGCT	7 cut(s)	128, 137, 389, 434, 645, 713, 1061
Alw26I	GTCTC	3 cut(s)	845, 1031, 1106
AlwI	GGATC	2 cut(s)	593, 1056
AlwNI	CAGNNNCTG	2 cut(s)	359, 629
AoxI	GGCC	2 cut(s)	651, 1200
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	1 cut(s)	972
Asp700I	GAANNNNTTC	2 cut(s)	367, 637
Asp718I	GGTACC	1 cut(s)	1082
AspS9I	GGNCC	3 cut(s)	329, 437, 652
AsuII	TTCGAA	1 cut(s)	27
AsuNHI	GCTAGC	1 cut(s)	526
AvaII	GGWCC	2 cut(s)	329, 437
BaeI	ACNNNNGTAYC	4 cut(s)	30, 58, 63, 91
BanI	GGYRCC	1 cut(s)	1082
BbsI	GAAGAC	1 cut(s)	92
BbvCI	CCTCAGC	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	4 cut(s)	8, 927, 1039, 1091
BcgI	CGANNNNNNTGC	4 cut(s)	227, 261, 497, 531
BciT130I	CCWGG	5 cut(s)	288, 319, 558, 630, 995
BcoDI	GTCTC	3 cut(s)	845, 1031, 1106
BfaI	CTAG	3 cut(s)	456, 527, 843
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme1390I	CCNGG	5 cut(s)	288, 319, 558, 630, 995
Bme18I	GGWCC	2 cut(s)	329, 437
BmgT120I	GGNCC	3 cut(s)	329, 437, 652
BmiI	GGNNCC	3 cut(s)	439, 1075, 1084
BmrFI	CCNGG	5 cut(s)	288, 319, 558, 630, 995
BmrI	ACTGGG	1 cut(s)	435
BmsI	GCATC	3 cut(s)	194, 439, 461
BmtI	GCTAGC	1 cut(s)	530
BmuI	ACTGGG	1 cut(s)	435
BpiI	GAAGAC	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	1016
Bpu10I	CCTNAGC	2 cut(s)	129, 181
Bpu14I	TTCGAA	1 cut(s)	27
Bsa29I	ATCGAT	2 cut(s)	231, 507
BsaI	GGTCTC	1 cut(s)	1106
BsaJI	CCNNGG	3 cut(s)	317, 751, 1077
Bsc4I	CCNNNNNNNGG	2 cut(s)	680, 757
Bse1I	ACTGG	2 cut(s)	441, 773
BseBI	CCWGG	5 cut(s)	288, 319, 558, 630, 995
BseCI	ATCGAT	2 cut(s)	231, 507
BseDI	CCNNGG	3 cut(s)	317, 751, 1077
BseGI	GGATG	2 cut(s)	226, 1050
BseLI	CCNNNNNNNGG	2 cut(s)	680, 757
BseMII	CTCAG	2 cut(s)	195, 927
BseNI	ACTGG	2 cut(s)	441, 773
BseXI	GCAGC	1 cut(s)	376
BshFI	GGCC	2 cut(s)	653, 1202
BshNI	GGYRCC	1 cut(s)	1082
BshVI	ATCGAT	2 cut(s)	231, 507
BslFI	GGGAC	2 cut(s)	423, 809
BslI	CCNNNNNNNGG	2 cut(s)	680, 757
BsmAI	GTCTC	3 cut(s)	845, 1031, 1106
BsmFI	GGGAC	2 cut(s)	423, 809
BsnI	GGCC	2 cut(s)	653, 1202
Bso31I	GGTCTC	1 cut(s)	1106
Bsp119I	TTCGAA	1 cut(s)	27
Bsp143I	GATC	5 cut(s)	118, 208, 598, 907, 1048
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	2 cut(s)	653, 1202
BspCNI	CTCAG	2 cut(s)	194, 926
BspDI	ATCGAT	2 cut(s)	231, 507
BspLI	GGNNCC	3 cut(s)	439, 1075, 1084
BspOI	GCTAGC	1 cut(s)	530
BspPI	GGATC	2 cut(s)	593, 1056
BspT104I	TTCGAA	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	1082
BspTNI	GGTCTC	1 cut(s)	1106
BsrI	ACTGG	2 cut(s)	441, 773
BssECI	CCNNGG	3 cut(s)	317, 751, 1077
BssMI	GATC	5 cut(s)	118, 208, 598, 907, 1048
BssT1I	CCWWGG	2 cut(s)	751, 1077
Bst2UI	CCWGG	5 cut(s)	288, 319, 558, 630, 995
Bst4CI	ACNGT	2 cut(s)	46, 901
Bst6I	CTCTTC	2 cut(s)	106, 975
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	528, 1177
BstDEI	CTNAG	6 cut(s)	129, 181, 393, 430, 606, 913
BstF5I	GGATG	2 cut(s)	226, 1050
BstKTI	GATC	5 cut(s)	121, 211, 601, 910, 1051
BstMAI	GTCTC	3 cut(s)	845, 1031, 1106
BstMBI	GATC	5 cut(s)	118, 208, 598, 907, 1048
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	5 cut(s)	288, 319, 558, 630, 995
BstNSI	RCATGY	1 cut(s)	1183
BstSCI	CCNGG	5 cut(s)	286, 317, 556, 628, 993
BstV1I	GCAGC	1 cut(s)	376
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	2 cut(s)	598, 1048
BstXI	CCANNNNNNTGG	1 cut(s)	1198
BstYI	RGATCY	2 cut(s)	598, 1048
Bsu15I	ATCGAT	2 cut(s)	231, 507
BsuRI	GGCC	2 cut(s)	653, 1202
BsuTUI	ATCGAT	2 cut(s)	231, 507
BtsCI	GGATG	2 cut(s)	226, 1050
Cac8I	GCNNGC	2 cut(s)	528, 1177
CaiI	CAGNNNCTG	2 cut(s)	359, 629
Cfr13I	GGNCC	3 cut(s)	329, 437, 652
ClaI	ATCGAT	2 cut(s)	231, 507
CseI	GACGC	2 cut(s)	393, 483
Csp6I	GTAC	3 cut(s)	8, 1083, 1145
CviAII	CATG	4 cut(s)	847, 949, 1094, 1180
CviQI	GTAC	3 cut(s)	8, 1083, 1145
DdeI	CTNAG	6 cut(s)	129, 181, 393, 430, 606, 913
DpnI	GATC	5 cut(s)	120, 210, 600, 909, 1050
DpnII	GATC	5 cut(s)	118, 208, 598, 907, 1048
Eam1104I	CTCTTC	2 cut(s)	106, 975
EarI	CTCTTC	2 cut(s)	106, 975
Eco130I	CCWWGG	2 cut(s)	751, 1077
Eco31I	GGTCTC	1 cut(s)	1106
Eco32I	GATATC	1 cut(s)	505
Eco47I	GGWCC	2 cut(s)	329, 437
EcoRI	GAATTC	1 cut(s)	972
EcoRII	CCWGG	5 cut(s)	286, 317, 556, 628, 993
EcoRV	GATATC	1 cut(s)	505
EcoT14I	CCWWGG	2 cut(s)	751, 1077
EcoT22I	ATGCAT	1 cut(s)	454
ErhI	CCWWGG	2 cut(s)	751, 1077
FaeI	CATG	4 cut(s)	850, 952, 1097, 1183
FaqI	GGGAC	2 cut(s)	423, 809
FatI	CATG	4 cut(s)	846, 948, 1093, 1179
FblI	GTMKAC	1 cut(s)	1184
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	2 cut(s)	233, 1057
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	3 cut(s)	456, 527, 843
GluI	GCNGC	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	1016
HaeIII	GGCC	2 cut(s)	653, 1202
HgaI	GACGC	2 cut(s)	393, 483
Hin1II	CATG	4 cut(s)	850, 952, 1097, 1183
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	2 cut(s)	643, 711
HinfI	GANTC	1 cut(s)	32
Hpy166II	GTNNAC	2 cut(s)	67, 1185
Hpy188I	TCNGA	8 cut(s)	37, 106, 190, 373, 448, 598, 916, 1156
Hpy188III	TCNNGA	2 cut(s)	360, 977
Hpy8I	GTNNAC	2 cut(s)	67, 1185
HpyAV	CCTTC	1 cut(s)	612
HpyCH4III	ACNGT	2 cut(s)	46, 901
HpyCH4V	TGCA	7 cut(s)	452, 623, 745, 799, 830, 905, 952
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	6 cut(s)	129, 181, 393, 430, 606, 913
Hsp92II	CATG	4 cut(s)	850, 952, 1097, 1183
KpnI	GGTACC	1 cut(s)	1086
Kzo9I	GATC	5 cut(s)	118, 208, 598, 907, 1048
LmnI	GCTCC	2 cut(s)	134, 1073
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	3 cut(s)	194, 439, 461
MaeI	CTAG	3 cut(s)	456, 527, 843
MaeIII	GTNAC	2 cut(s)	405, 1130
MalI	GATC	5 cut(s)	120, 210, 600, 909, 1050
MboI	GATC	5 cut(s)	118, 208, 598, 907, 1048
MboII	GAAGA	5 cut(s)	41, 93, 97, 153, 992
MflI	RGATCY	2 cut(s)	598, 1048
MluCI	AATT	9 cut(s)	94, 379, 423, 785, 794, 890, 958, 972, 1065
MmeI	TCCRAC	2 cut(s)	757, 1051
MnlI	CCTC	3 cut(s)	190, 564, 643
Mph1103I	ATGCAT	1 cut(s)	454
MroXI	GAANNNNTTC	2 cut(s)	367, 637
MseI	TTAA	2 cut(s)	198, 336
MslI	CAYNNNNRTG	1 cut(s)	1196
MspR9I	CCNGG	5 cut(s)	288, 319, 558, 630, 995
MvaI	CCWGG	5 cut(s)	288, 319, 558, 630, 995
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	5 cut(s)	118, 208, 598, 907, 1048
NheI	GCTAGC	1 cut(s)	526
NlaIII	CATG	4 cut(s)	850, 952, 1097, 1183
NlaIV	GGNNCC	3 cut(s)	439, 1075, 1084
NmuCI	GTSAC	2 cut(s)	405, 1130
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	1 cut(s)	1183
NspV	TTCGAA	1 cut(s)	27
OliI	CACNNNNGTG	1 cut(s)	1196
PdmI	GAANNNNTTC	2 cut(s)	367, 637
PfeI	GAWTC	1 cut(s)	32
PfoI	TCCNGGA	4 cut(s)	286, 556, 628, 993
PkrI	GCNGC	1 cut(s)	391
Psp6I	CCWGG	5 cut(s)	286, 317, 556, 628, 993
PspGI	CCWGG	5 cut(s)	286, 317, 556, 628, 993
PspN4I	GGNNCC	3 cut(s)	439, 1075, 1084
PspPI	GGNCC	3 cut(s)	329, 437, 652
PstNI	CAGNNNCTG	2 cut(s)	359, 629
PsuI	RGATCY	2 cut(s)	598, 1048
RsaI	GTAC	3 cut(s)	9, 1084, 1146
RsaNI	GTAC	3 cut(s)	8, 1083, 1145
RseI	CAYNNNNRTG	1 cut(s)	1196
SaqAI	TTAA	2 cut(s)	198, 336
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	5 cut(s)	118, 208, 598, 907, 1048
Sau96I	GGNCC	3 cut(s)	329, 437, 652
ScrFI	CCNGG	5 cut(s)	288, 319, 558, 630, 995
SfaNI	GCATC	3 cut(s)	194, 439, 461
SfuI	TTCGAA	1 cut(s)	27
SinI	GGWCC	2 cut(s)	329, 437
SmiMI	CAYNNNNRTG	1 cut(s)	1196
Sse9I	AATT	9 cut(s)	94, 379, 423, 785, 794, 890, 958, 972, 1065
SsiI	CCGC	1 cut(s)	275
SspI	AATATT	2 cut(s)	769, 1020
SspMI	CTAG	3 cut(s)	456, 527, 843
StyD4I	CCNGG	5 cut(s)	286, 317, 556, 628, 993
StyI	CCWWGG	2 cut(s)	751, 1077
TaaI	ACNGT	2 cut(s)	46, 901
TaqI	TCGA	6 cut(s)	27, 231, 237, 385, 507, 1206
TasI	AATT	9 cut(s)	94, 379, 423, 785, 794, 890, 958, 972, 1065
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	198, 336
Tru9I	TTAA	2 cut(s)	198, 336
TseFI	GTSAC	2 cut(s)	405, 1130
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	2 cut(s)	405, 1130
TspDTI	ATGAA	2 cut(s)	873, 1110
VpaK11BI	GGWCC	2 cut(s)	329, 437
XapI	RAATTY	1 cut(s)	972
XceI	RCATGY	1 cut(s)	1183
XcmI	CCANNNNNNNNNTGG	1 cut(s)	315
XmiI	GTMKAC	1 cut(s)	1184
XmnI	GAANNNNTTC	2 cut(s)	367, 637
XspI	CTAG	3 cut(s)	456, 527, 843
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.