Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003941

Physical Location & Seq

Genomic Coordinates Reverse (-)

65524273 .. 65529411

Gene Structure 5139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1920 bp

ATGGAGTCGCCGCCGTTCCCCCATATTTCGGAGAAGCCAGTGTTTCCGGAGAGCAGTTCTCAGTGCATGGATGAAGACGACGTCGTCTTGAGTACTCCTCCAATCTCCCGGACTCCGAAATCGGAGAAAGGGAAGGAGGTTATTGTACCTGATGGTATTCACATTGAAGATTCTGATACTGCGGTGTTTATTGATGAGAAAGTTGACAGAAGTATCAAAGGGAAGGCAATAAATTACTCTTCCGATGAGTTTCCTGATCGTAAAGCTAAGGGAGCTGTCACAAATAACTTTACTGGTTCTTCTGGTAAGAGTTTAGCCTCAGCATCAGATAACATTAACTTTGCTGATCTGTTTTTGGATGATGTTATCGATGTCGATGAGTATGCCCGTTTGCTATCCCATTTTGATAATGCGGATATTTCTCCTGGAATAGAAGCACCTATGCCACCTATCCCCTGGTTGTTTGGTCCTGTTAAAAGTGATATAAAGTCAGTTTCTGGAAGTAGTTCTGATACAAATTATGGAGCTGCTAAGAGTTTTGCGTCACTCTCGCATAATGGAATTGACTTAGCTGGTCCCAGTTCTGATGCATCTAGTTCCATTGATGACTATTCTGGTCTTTATTTGGAAGCTTCCATAGATATCGATGAGTATGCTGAAATGCTAGCCCATTTTGACAAAATGGATATTCCTCCTGGAATAGAAGCACCTATCCCACATTTTCGGTCATTGTCAGATCCTTCTAAGAGCAATATAAATGCAGTTCCTGGAAGTAGTTCAAGCTTGGAGGCCCAAACGAATGTTTTTAGTCCTGCTCTTGGGCTATCATCATCTTGGAAACTTCCACAAGCTTCCAGCAGTAAAACAAAACAATCTTATCTGCAAGACCAAGGGAGGGCTTCTAATATTCCAGTTGGAGTAGAATTATCAAAATTGCATACACAAACTCAAATCAGTGATGTCCCTGCAAAGCAAGTTTCTAGCATGGAGACAGATGAAACTATTAGGAAGTTCAAGGATTTCAAACAATTTGATACAGTTGCAGATCACTCAGACCATCACTATACTAACAAGAGTAGTTCTACCATGCAGAAAAATTGGGCAAAGAGAATTCAGGAAGAGTGGAAAATCCTGGAGAAAGATTTGCCTGATACAATATTTGTTAGAGTTTATGAGACAAGGATGGATCTTTTGAGAGCTGTTATTGTTGGAGCCAAGGGTACCCCCTACCATGATGGTCTCTTTTTCTTTGATGTTTCATTTCCAAGTGACTATCCCAATGTACCCCCGCATGTCTACTACCACTCTGGTGGCCTTCGACTAAATCCAAATTTGTATGATTGTGGAAAAGTATGCCTCAGCCTTCTCAACACCTGGTCTGGGGGCAAGCAAGAGATGTGGATCCCTGGTAAGTCAACGATGCTTCAGGTTTTGGTCTCTATACAAGGGTTGATCTTGAATACAGAGCCCTACTTCAATGAGCCTGGATGGGCACCTATGAAGGGTACACCAGGCGGTGAAATGGCATCGAAGAAGTACAATGAGGACACGTTAATCCTATCTCTAAGGACAATGGTGTACACGATGAAGCGGCCTCCAAAGTATTTTGAGCACTTTGTTCTCGGGCATTTCCGCAATCATGCTCATGATATTCTTGTAGCATGCAAGGCATATATGGATGGAGCTGAAGTGGGGTGTTTAGTCAAAGGTTCGGTTCAGGGCGTTGATGGTAATAAGAGCTGCTCGCAGGTGTTTAAGAATTCTCTGGCTAGGTTTTTGCCTACTCTTGTCAAAGAGTTGACACAAATAGGTGCCAAGGACTGTGAGAAATTTTTATCACCAGCAACAGTTGAGAATAAGCAGATTGGTAGCATGCCTCAGGCTGTAGCACCAACACAGGTTTCATGGTGGAACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

639

Amino Acids

70.29

Weight (kDa)

5.39

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	370 - 489	1.9e-21	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003941)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020
rosa_chinensis	RchiOBHm_Chr5g0033801 RchiOBHm_Chr5g0033811
rosa_laevigata	RLG00000033502 RLG00000033503
rosa_multiflora	Rmu_co8469003.1_g000001 Rmu_sc0001768.1_g000051 Rmu_sc0001768.1_g000056 Rmu_sc0001768.1_g000059
rosa_roxburghii	Rroxscaffold_1G00046360 Rroxscaffold_1G00046380
rosa_rugosa	Rorug05G0142100 Rorug05G0142100 Rorug05G0142100 Rorug05G0142200 Rorug05G0142400 Rorug05G0142500
rosa_samantha	Rh5AG233300 Rh5AG233400 Rh5BG233800 Rh5BG233900 Rh5CG263700 Rh5CG264000 Rh5DG240700 Rh5DG240800
rosa_wichuraiana	Rw5G021570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1738
AasI	GACNNNNNNGTC	1 cut(s)	83
AatII	GACGTC	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	1738
Acc65I	GGTACC	1 cut(s)	1220
AccB1I	GGYRCC	3 cut(s)	1220, 1492, 1811
AccI	GTMKAC	1 cut(s)	1296
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	7 cut(s)	11, 182, 413, 1289, 1515, 1591, 1633
AclWI	GGATC	4 cut(s)	731, 1194, 1396, 1409
AcsI	RAATTY	4 cut(s)	1110, 1330, 1759, 1829
AcuI	CTGAAG	2 cut(s)	1409, 1707
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	7 cut(s)	94, 147, 1222, 1284, 1507, 1538, 1580
AfiI	CCNNNNNNNGG	5 cut(s)	28, 818, 895, 1380, 1502
AflIII	ACRYGT	1 cut(s)	1548
AgsI	TTSAA	6 cut(s)	167, 780, 1015, 1024, 1459, 1477
AjnI	CCWGG	9 cut(s)	424, 455, 694, 766, 1131, 1373, 1405, 1483, 1510
AjuI	GAANNNNNNNTTGG	2 cut(s)	1885, 1917
AleI	CACNNNNGTG	1 cut(s)	1308
Alw21I	GWGCWC	1 cut(s)	1614
Alw26I	GTCTC	4 cut(s)	983, 1169, 1244, 1441
AlwI	GGATC	4 cut(s)	731, 1194, 1396, 1409
AlwNI	CAGNNNCTG	2 cut(s)	497, 767
Ama87I	CYCGRG	1 cut(s)	1622
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	3 cut(s)	789, 1312, 1592
ApeKI	GCWGC	2 cut(s)	527, 1740
ApoI	RAATTY	4 cut(s)	1110, 1330, 1759, 1829
Asp700I	GAANNNNTTC	2 cut(s)	505, 775
Asp718I	GGTACC	1 cut(s)	1220
AspS9I	GGNCC	3 cut(s)	467, 575, 790
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	2 cut(s)	1529, 1830
AsuNHI	GCTAGC	1 cut(s)	664
AvaI	CYCGRG	1 cut(s)	1622
AvaII	GGWCC	2 cut(s)	467, 575
AxyI	CCTNAGG	1 cut(s)	1878
BaeGI	GKGCMC	1 cut(s)	1495
BaeI	ACNNNNGTAYC	4 cut(s)	168, 196, 201, 229
BamHI	GGATCC	1 cut(s)	1401
BanI	GGYRCC	3 cut(s)	1220, 1492, 1811
BanII	GRGCYC	1 cut(s)	1470
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	1614
BbvCI	CCTCAGC	2 cut(s)	319, 1358
BbvI	GCAGC	2 cut(s)	514, 1727
BccI	CCATC	7 cut(s)	146, 1065, 1177, 1229, 1482, 1673, 1721
BcgI	CGANNNNNNTGC	4 cut(s)	365, 399, 635, 669
BciT130I	CCWGG	9 cut(s)	426, 457, 696, 768, 1133, 1375, 1407, 1485, 1512
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	4 cut(s)	983, 1169, 1244, 1441
BfaI	CTAG	4 cut(s)	594, 665, 981, 1770
BfmI	CTRYAG	1 cut(s)	1884
BfuAI	ACCTGC	1 cut(s)	1738
BisI	GCNGC	4 cut(s)	11, 528, 1592, 1741
BlsI	GCNGC	4 cut(s)	12, 529, 1593, 1742
BmcAI	AGTACT	1 cut(s)	94
Bme18I	GGWCC	2 cut(s)	467, 575
BmeT110I	CYCGRG	1 cut(s)	1622
BmgT120I	GGNCC	3 cut(s)	467, 575, 790
BmiI	GGNNCC	6 cut(s)	577, 1213, 1222, 1403, 1494, 1813
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	5 cut(s)	332, 577, 599, 1410, 1535
BmtI	GCTAGC	1 cut(s)	668
BmuI	ACTGGG	1 cut(s)	573
BpiI	GAAGAC	1 cut(s)	81
BplI	GAGNNNNNCTC	4 cut(s)	43, 75, 82, 114
BpmI	CTGGAG	1 cut(s)	1154
Bpu10I	CCTNAGC	3 cut(s)	267, 319, 1358
BpuEI	CTTGAG	1 cut(s)	109
BpuMI	CCSGG	1 cut(s)	109
Bsa29I	ATCGAT	2 cut(s)	369, 645
BsaBI	GATNNNNATC	1 cut(s)	1400
BsaHI	GRCGYC	1 cut(s)	81
BsaI	GGTCTC	2 cut(s)	1244, 1441
BsaJI	CCNNGG	5 cut(s)	455, 889, 1215, 1405, 1815
BsaWI	WCCGGW	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	1674, 1704
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 818, 895, 1380, 1502
Bse1I	ACTGG	4 cut(s)	38, 298, 579, 911
Bse21I	CCTNAGG	1 cut(s)	1878
Bse8I	GATNNNNATC	1 cut(s)	1400
BseAI	TCCGGA	1 cut(s)	46
BseBI	CCWGG	9 cut(s)	426, 457, 696, 768, 1133, 1375, 1407, 1485, 1512
BseCI	ATCGAT	2 cut(s)	369, 645
BseDI	CCNNGG	5 cut(s)	455, 889, 1215, 1405, 1815
BseGI	GGATG	5 cut(s)	76, 364, 1188, 1493, 1684
BseJI	GATNNNNATC	1 cut(s)	1400
BseLI	CCNNNNNNNGG	5 cut(s)	28, 818, 895, 1380, 1502
BseMII	CTCAG	5 cut(s)	74, 333, 1065, 1372, 1892
BseNI	ACTGG	4 cut(s)	38, 298, 579, 911
BseRI	GAGGAG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	1495
BseXI	GCAGC	2 cut(s)	514, 1727
BshFI	GGCC	3 cut(s)	791, 1314, 1594
BshNI	GGYRCC	3 cut(s)	1220, 1492, 1811
BshVI	ATCGAT	2 cut(s)	369, 645
BsiHKAI	GWGCWC	1 cut(s)	1614
BsiHKCI	CYCGRG	1 cut(s)	1622
BsiSI	CCGG	2 cut(s)	47, 109
BslFI	GGGAC	2 cut(s)	561, 947
BslI	CCNNNNNNNGG	5 cut(s)	28, 818, 895, 1380, 1502
BsmAI	GTCTC	4 cut(s)	983, 1169, 1244, 1441
BsmFI	GGGAC	2 cut(s)	561, 947
BsnI	GGCC	3 cut(s)	791, 1314, 1594
Bso31I	GGTCTC	2 cut(s)	1244, 1441
BsoBI	CYCGRG	1 cut(s)	1622
Bsp1286I	GDGCHC	3 cut(s)	1470, 1495, 1614
Bsp13I	TCCGGA	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	1578
Bsp143I	GATC	7 cut(s)	256, 346, 736, 1045, 1186, 1401, 1452
BspACI	CCGC	7 cut(s)	11, 182, 413, 1289, 1515, 1591, 1633
BspANI	GGCC	3 cut(s)	791, 1314, 1594
BspCNI	CTCAG	5 cut(s)	73, 332, 1064, 1371, 1891
BspDI	ATCGAT	2 cut(s)	369, 645
BspEI	TCCGGA	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	1645
BspLI	GGNNCC	6 cut(s)	577, 1213, 1222, 1403, 1494, 1813
BspMI	ACCTGC	1 cut(s)	1738
BspOI	GCTAGC	1 cut(s)	668
BspPI	GGATC	4 cut(s)	731, 1194, 1396, 1409
BspT107I	GGYRCC	3 cut(s)	1220, 1492, 1811
BspTNI	GGTCTC	2 cut(s)	1244, 1441
BsrGI	TGTACA	1 cut(s)	1578
BsrI	ACTGG	4 cut(s)	38, 298, 579, 911
BssECI	CCNNGG	5 cut(s)	455, 889, 1215, 1405, 1815
BssMI	GATC	7 cut(s)	256, 346, 736, 1045, 1186, 1401, 1452
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	3 cut(s)	889, 1215, 1815
Bst2UI	CCWGG	9 cut(s)	426, 457, 696, 768, 1133, 1375, 1407, 1485, 1512
Bst4CI	ACNGT	3 cut(s)	1039, 1823, 1849
Bst6I	CTCTTC	2 cut(s)	244, 1113
BstACI	GRCGYC	1 cut(s)	81
BstAUI	TGTACA	1 cut(s)	1578
BstC8I	GCNNGC	5 cut(s)	666, 1388, 1663, 1745, 1874
BstF5I	GGATG	5 cut(s)	76, 364, 1188, 1493, 1684
BstKTI	GATC	7 cut(s)	259, 349, 739, 1048, 1189, 1404, 1455
BstMAI	GTCTC	4 cut(s)	983, 1169, 1244, 1441
BstMBI	GATC	7 cut(s)	256, 346, 736, 1045, 1186, 1401, 1452
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 1667
BstNI	CCWGG	9 cut(s)	426, 457, 696, 768, 1133, 1375, 1407, 1485, 1512
BstNSI	RCATGY	3 cut(s)	1295, 1665, 1876
BstSFI	CTRYAG	1 cut(s)	1884
BstSLI	GKGCMC	1 cut(s)	1495
BstV1I	GCAGC	2 cut(s)	514, 1727
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	3 cut(s)	736, 1186, 1401
BstXI	CCANNNNNNTGG	1 cut(s)	1310
BstYI	RGATCY	3 cut(s)	736, 1186, 1401
Bsu15I	ATCGAT	2 cut(s)	369, 645
Bsu36I	CCTNAGG	1 cut(s)	1878
BsuRI	GGCC	3 cut(s)	791, 1314, 1594
BsuTUI	ATCGAT	2 cut(s)	369, 645
BtsCI	GGATG	5 cut(s)	76, 364, 1188, 1493, 1684
BtsIMutI	CAGTG	3 cut(s)	45, 68, 961
BveI	ACCTGC	1 cut(s)	1738
Cac8I	GCNNGC	5 cut(s)	666, 1388, 1663, 1745, 1874
CaiI	CAGNNNCTG	2 cut(s)	497, 767
CciI	TCATGA	1 cut(s)	1645
Cfr13I	GGNCC	3 cut(s)	467, 575, 790
ClaI	ATCGAT	2 cut(s)	369, 645
CseI	GACGC	1 cut(s)	531
CsiI	ACCWGGT	1 cut(s)	1373
Csp6I	GTAC	7 cut(s)	93, 146, 1221, 1283, 1506, 1537, 1579
CspCI	CAANNNNNGTGG	2 cut(s)	1379, 1414
CviQI	GTAC	7 cut(s)	93, 146, 1221, 1283, 1506, 1537, 1579
DpnI	GATC	7 cut(s)	258, 348, 738, 1047, 1188, 1403, 1454
DpnII	GATC	7 cut(s)	256, 346, 736, 1045, 1186, 1401, 1452
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eam1104I	CTCTTC	2 cut(s)	244, 1113
EarI	CTCTTC	2 cut(s)	244, 1113
Eco130I	CCWWGG	3 cut(s)	889, 1215, 1815
Eco24I	GRGCYC	1 cut(s)	1470
Eco31I	GGTCTC	2 cut(s)	1244, 1441
Eco32I	GATATC	1 cut(s)	643
Eco47I	GGWCC	2 cut(s)	467, 575
Eco57I	CTGAAG	2 cut(s)	1409, 1707
Eco81I	CCTNAGG	1 cut(s)	1878
Eco88I	CYCGRG	1 cut(s)	1622
EcoRI	GAATTC	2 cut(s)	1110, 1759
EcoRII	CCWGG	9 cut(s)	424, 455, 694, 766, 1131, 1373, 1405, 1483, 1510
EcoRV	GATATC	1 cut(s)	643
EcoT14I	CCWWGG	3 cut(s)	889, 1215, 1815
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	1470
ErhI	CCWWGG	3 cut(s)	889, 1215, 1815
FaqI	GGGAC	2 cut(s)	561, 947
FauI	CCCGC	1 cut(s)	1296
FblI	GTMKAC	1 cut(s)	1296
Fnu4HI	GCNGC	4 cut(s)	11, 528, 1592, 1741
FokI	GGATG	5 cut(s)	83, 371, 1195, 1500, 1691
FriOI	GRGCYC	1 cut(s)	1470
Fsp4HI	GCNGC	4 cut(s)	11, 528, 1592, 1741
FspBI	CTAG	4 cut(s)	594, 665, 981, 1770
GluI	GCNGC	4 cut(s)	11, 528, 1592, 1741
GsuI	CTGGAG	1 cut(s)	1154
HaeIII	GGCC	3 cut(s)	791, 1314, 1594
HapII	CCGG	2 cut(s)	47, 109
HgaI	GACGC	1 cut(s)	531
Hin1I	GRCGYC	1 cut(s)	81
HincII	GTYRAC	3 cut(s)	205, 1416, 1800
HindII	GTYRAC	3 cut(s)	205, 1416, 1800
HindIII	AAGCTT	3 cut(s)	630, 781, 849
HinfI	GANTC	3 cut(s)	5, 112, 170
HpaII	CCGG	2 cut(s)	47, 109
HphI	GGTGA	2 cut(s)	1529, 1830
Hpy166II	GTNNAC	7 cut(s)	205, 1297, 1416, 1508, 1579, 1581, 1800
Hpy188III	TCNNGA	7 cut(s)	47, 88, 254, 498, 1115, 1456, 1646
Hpy8I	GTNNAC	7 cut(s)	205, 1297, 1416, 1508, 1579, 1581, 1800
Hpy99I	CGWCG	2 cut(s)	83, 86
HpyAV	CCTTC	6 cut(s)	127, 217, 750, 1325, 1373, 1495
HpyCH4III	ACNGT	3 cut(s)	1039, 1823, 1849
HpyCH4IV	ACGT	2 cut(s)	81, 1550
HpyCH4V	TGCA	9 cut(s)	66, 590, 761, 883, 937, 968, 1043, 1090, 1665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 1667
HpySE526I	ACGT	2 cut(s)	81, 1550
Hsp92I	GRCGYC	1 cut(s)	81
Kpn2I	TCCGGA	1 cut(s)	46
KpnI	GGTACC	1 cut(s)	1224
Kzo9I	GATC	7 cut(s)	256, 346, 736, 1045, 1186, 1401, 1452
LmnI	GCTCC	4 cut(s)	272, 524, 1211, 1682
Lsp1109I	GCAGC	2 cut(s)	514, 1727
LweI	GCATC	5 cut(s)	332, 577, 599, 1410, 1535
MabI	ACCWGGT	1 cut(s)	1373
MaeI	CTAG	4 cut(s)	594, 665, 981, 1770
MaeII	ACGT	2 cut(s)	81, 1550
MaeIII	GTNAC	3 cut(s)	277, 543, 1268
MalI	GATC	7 cut(s)	258, 348, 738, 1047, 1188, 1403, 1454
MboI	GATC	7 cut(s)	256, 346, 736, 1045, 1186, 1401, 1452
MboII	GAAGA	6 cut(s)	86, 179, 231, 291, 1130, 1543
MflI	RGATCY	3 cut(s)	736, 1186, 1401
MhlI	GDGCHC	3 cut(s)	1470, 1495, 1614
MlyI	GAGTC	2 cut(s)	14, 106
MmeI	TCCRAC	2 cut(s)	895, 1189
Mph1103I	ATGCAT	1 cut(s)	592
MroI	TCCGGA	1 cut(s)	46
MroXI	GAANNNNTTC	2 cut(s)	505, 775
MseI	TTAA	4 cut(s)	336, 474, 1553, 1755
MslI	CAYNNNNRTG	2 cut(s)	1308, 1644
MspI	CCGG	2 cut(s)	47, 109
MvaI	CCWGG	9 cut(s)	426, 457, 696, 768, 1133, 1375, 1407, 1485, 1512
MwoI	GCNNNNNNNGC	2 cut(s)	272, 1667
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	7 cut(s)	256, 346, 736, 1045, 1186, 1401, 1452
NheI	GCTAGC	1 cut(s)	664
NlaIV	GGNNCC	6 cut(s)	577, 1213, 1222, 1403, 1494, 1813
NmuCI	GTSAC	3 cut(s)	277, 543, 1268
NsiI	ATGCAT	1 cut(s)	592
NspI	RCATGY	3 cut(s)	1295, 1665, 1876
OliI	CACNNNNGTG	1 cut(s)	1308
PaeI	GCATGC	2 cut(s)	1665, 1876
PagI	TCATGA	1 cut(s)	1645
PaqCI	CACCTGC	1 cut(s)	1738
PdmI	GAANNNNTTC	2 cut(s)	505, 775
PfeI	GAWTC	1 cut(s)	170
PflFI	GACNNNGTC	2 cut(s)	80, 83
PfoI	TCCNGGA	5 cut(s)	107, 424, 694, 766, 1131
PkrI	GCNGC	4 cut(s)	12, 529, 1593, 1742
PleI	GAGTC	2 cut(s)	13, 106
PpsI	GAGTC	2 cut(s)	13, 106
Psp6I	CCWGG	9 cut(s)	424, 455, 694, 766, 1131, 1373, 1405, 1483, 1510
PspGI	CCWGG	9 cut(s)	424, 455, 694, 766, 1131, 1373, 1405, 1483, 1510
PspN4I	GGNNCC	6 cut(s)	577, 1213, 1222, 1403, 1494, 1813
PspPI	GGNCC	3 cut(s)	467, 575, 790
PstNI	CAGNNNCTG	2 cut(s)	497, 767
PsuI	RGATCY	3 cut(s)	736, 1186, 1401
PsyI	GACNNNGTC	2 cut(s)	80, 83
RsaI	GTAC	7 cut(s)	94, 147, 1222, 1284, 1507, 1538, 1580
RsaNI	GTAC	7 cut(s)	93, 146, 1221, 1283, 1506, 1537, 1579
RseI	CAYNNNNRTG	2 cut(s)	1308, 1644
SaqAI	TTAA	4 cut(s)	336, 474, 1553, 1755
SatI	GCNGC	4 cut(s)	11, 528, 1592, 1741
Sau3AI	GATC	7 cut(s)	256, 346, 736, 1045, 1186, 1401, 1452
Sau96I	GGNCC	3 cut(s)	467, 575, 790
ScaI	AGTACT	1 cut(s)	94
SchI	GAGTC	2 cut(s)	14, 106
SduI	GDGCHC	3 cut(s)	1470, 1495, 1614
SexAI	ACCWGGT	1 cut(s)	1373
SfaNI	GCATC	5 cut(s)	332, 577, 599, 1410, 1535
SfcI	CTRYAG	1 cut(s)	1884
SinI	GGWCC	2 cut(s)	467, 575
SmiMI	CAYNNNNRTG	2 cut(s)	1308, 1644
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
SphI	GCATGC	2 cut(s)	1665, 1876
SsiI	CCGC	7 cut(s)	11, 182, 413, 1289, 1515, 1591, 1633
SspI	AATATT	2 cut(s)	907, 1158
SspMI	CTAG	4 cut(s)	594, 665, 981, 1770
StyI	CCWWGG	3 cut(s)	889, 1215, 1815
TaaI	ACNGT	3 cut(s)	1039, 1823, 1849
TaiI	ACGT	2 cut(s)	84, 1553
TaqI	TCGA	5 cut(s)	369, 375, 645, 1318, 1529
TaqII	GACCGA	1 cut(s)	714
TatI	WGTACW	3 cut(s)	92, 1536, 1578
TauI	GCSGC	2 cut(s)	13, 1594
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	4 cut(s)	336, 474, 1553, 1755
Tru9I	TTAA	4 cut(s)	336, 474, 1553, 1755
TscAI	CASTG	3 cut(s)	45, 68, 961
TseFI	GTSAC	3 cut(s)	277, 543, 1268
TseI	GCWGC	2 cut(s)	527, 1740
Tsp45I	GTSAC	3 cut(s)	277, 543, 1268
TspDTI	ATGAA	6 cut(s)	87, 1011, 1248, 1514, 1601, 1893
TspRI	CASTG	3 cut(s)	45, 68, 961
Tth111I	GACNNNGTC	2 cut(s)	80, 83
VpaK11BI	GGWCC	2 cut(s)	467, 575
XapI	RAATTY	4 cut(s)	1110, 1330, 1759, 1829
XceI	RCATGY	3 cut(s)	1295, 1665, 1876
XcmI	CCANNNNNNNNNTGG	1 cut(s)	453
XmiI	GTMKAC	1 cut(s)	1296
XmnI	GAANNNNTTC	2 cut(s)	505, 775
XspI	CTAG	4 cut(s)	594, 665, 981, 1770
ZraI	GACGTC	1 cut(s)	82
ZrmI	AGTACT	1 cut(s)	94
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.