Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003941

Physical Location & Seq

Genomic Coordinates Forward (+)

13017313 .. 13017772

Gene Structure 460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0142200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGATATGATGGTGAGGCAATCAAATAGAAGAGTGGCTTGTGAAAGGTGGAAGGATTTGGTTGGACCAAGAATCAAGAAGATCATTGACAAGACTGGTCAGAGAGCAACTGAATACAGAGCACATAGAGCTGGGGAGTTCATATTCCAGATCACTGGCTGTGGAGAGCATGGCAACAAGAAGTTGCATTATATTGTGATGACTATCTTATGCCCAACCTATATGGAGGCCTACAACCCCATAATCTACCCTATTGCTGGCCAAGAGGATTGGGAACCTGTTGATTACCCCATTGCACGTCCACTTTTCAAGCAGCAACCTGGTCGGCCTAAGATGAAAAGGGTGAAGGAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

118

Amino Acids

13.85

Weight (kDa)

9.6

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003941)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020
rosa_chinensis	RchiOBHm_Chr5g0033801 RchiOBHm_Chr5g0033811
rosa_laevigata	RLG00000033502 RLG00000033503
rosa_multiflora	Rmu_co8469003.1_g000001 Rmu_sc0001768.1_g000051 Rmu_sc0001768.1_g000056 Rmu_sc0001768.1_g000059
rosa_roxburghii	Rroxscaffold_1G00046360 Rroxscaffold_1G00046380
rosa_rugosa	Rorug05G0142100 Rorug05G0142100 Rorug05G0142100 Rorug05G0142200 Rorug05G0142400 Rorug05G0142500
rosa_samantha	Rh5AG233300 Rh5AG233400 Rh5BG233800 Rh5BG233900 Rh5CG263700 Rh5CG264000 Rh5DG240700 Rh5DG240800
rosa_wichuraiana	Rw5G021570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	259
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	1 cut(s)	310
AjiI	CACGTC	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Alw21I	GWGCWC	1 cut(s)	124
AoxI	GGCC	3 cut(s)	228, 259, 326
ApeKI	GCWGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	2 cut(s)	25, 355
AvaII	GGWCC	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	1 cut(s)	4
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	1 cut(s)	321
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	65
BmgBI	CACGTC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	276, 351
BmrFI	CCNGG	1 cut(s)	321
BsaBI	GATNNNNATC	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	2 cut(s)	100, 160
Bse3DI	GCAATG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	321
BseJI	GATNNNNATC	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMI	GCAATG	1 cut(s)	291
BseNI	ACTGG	2 cut(s)	100, 160
BseXI	GCAGC	1 cut(s)	325
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	3 cut(s)	230, 261, 328
BsiHKAI	GWGCWC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	257
BsnI	GGCC	3 cut(s)	230, 261, 328
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	81, 150
BspANI	GGCC	3 cut(s)	230, 261, 328
BspLI	GGNNCC	2 cut(s)	276, 351
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	100, 160
BssMI	GATC	2 cut(s)	81, 150
Bst2UI	CCWGG	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	330
BstKTI	GATC	2 cut(s)	84, 153
BstMBI	GATC	2 cut(s)	81, 150
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	325
BstXI	CCANNNNNNTGG	1 cut(s)	155
BsuRI	GGCC	3 cut(s)	230, 261, 328
BtrI	CACGTC	1 cut(s)	299
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	65
CsiI	ACCWGGT	1 cut(s)	319
CviAII	CATG	2 cut(s)	170, 354
CviJI	RGCY	6 cut(s)	38, 131, 159, 230, 261, 328
CviKI_1	RGCY	6 cut(s)	38, 131, 159, 230, 261, 328
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	2 cut(s)	83, 152
DpnII	GATC	2 cut(s)	81, 150
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco147I	AGGCCT	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	319
FaeI	CATG	2 cut(s)	173, 357
FalI	AAGNNNNNCTT	2 cut(s)	22, 54
FatI	CATG	2 cut(s)	169, 353
Fnu4HI	GCNGC	1 cut(s)	314
Fsp4HI	GCNGC	1 cut(s)	314
GluI	GCNGC	1 cut(s)	314
GsaI	CCCAGC	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	230, 261, 328
Hin1II	CATG	2 cut(s)	173, 357
HinfI	GANTC	1 cut(s)	72
HphI	GGTGA	2 cut(s)	25, 355
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	2 cut(s)	76, 148
Hpy8I	GTNNAC	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	46, 340
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	2 cut(s)	187, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	2 cut(s)	173, 357
Kzo9I	GATC	2 cut(s)	81, 150
LpnPI	CCDG	8 cut(s)	81, 117, 141, 161, 243, 291, 306, 333
Lsp1109I	GCAGC	1 cut(s)	325
MabI	ACCWGGT	1 cut(s)	319
MaeII	ACGT	1 cut(s)	298
MalI	GATC	2 cut(s)	83, 152
MboI	GATC	2 cut(s)	81, 150
MboII	GAAGA	2 cut(s)	42, 91
MhlI	GDGCHC	1 cut(s)	124
MlsI	TGGCCA	1 cut(s)	261
MluNI	TGGCCA	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	3 cut(s)	9, 220, 259
Mox20I	TGGCCA	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	2 cut(s)	81, 150
NlaIII	CATG	2 cut(s)	173, 357
NlaIV	GGNNCC	2 cut(s)	276, 351
PceI	AGGCCT	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	276, 351
PspPI	GGNCC	1 cut(s)	65
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	2 cut(s)	81, 150
Sau96I	GGNCC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	6 cut(s)	50, 133, 221, 280, 301, 322
SexAI	ACCWGGT	1 cut(s)	319
SinI	GGWCC	1 cut(s)	65
SseBI	AGGCCT	1 cut(s)	230
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	319
TaiI	ACGT	1 cut(s)	301
TfiI	GAWTC	1 cut(s)	72
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	130, 350
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.