Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003941

Physical Location & Seq

Genomic Coordinates Reverse (-)

13070793 .. 13071508

Gene Structure 716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0142500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCAGAAGGTTACTGCATCAAGCAACTCATCGACGGCGACGGGAAATTCAATGCTGATGGGCTGGACAGGTTCGTGGAGGAAGCGAATCTTATCGAGTGCGGACTCACATATGCTGTCGTTGCCATTATGGGTCCTCAGAGTGGCGGGAAGAGCACTTTGGTGAACCACCTGTTCAACACCAACTTTACGGAGATGAACGCAAAAAAGGAAACGAAACAAACAACATTAGGCATTTGGATAGCCAAGTGCGTTGGCATCAAGCCTGACACCATTGTCATGGATTTGGAGGGTAGTGATGGTAGGGAGAGAGGCTCGGATGATACTGCTTTCGAGAAACAAATTGCTCTATTTGCACTGGCAGTTGCTGACATTCTCCTGATAAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

130

Amino Acids

14.11

Weight (kDa)

4.6

Isoelectric Point (pI)

20.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RHD3_GTPase	PF05879	44 - 130	4.8e-38	Root hair defective 3 GTP-binding protein (RHD3) GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003941)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020 FvH4_3g20020
rosa_chinensis	RchiOBHm_Chr5g0033801 RchiOBHm_Chr5g0033811
rosa_laevigata	RLG00000033502 RLG00000033503
rosa_multiflora	Rmu_co8469003.1_g000001 Rmu_sc0001768.1_g000051 Rmu_sc0001768.1_g000056 Rmu_sc0001768.1_g000059
rosa_roxburghii	Rroxscaffold_1G00046360 Rroxscaffold_1G00046380
rosa_rugosa	Rorug05G0142100 Rorug05G0142100 Rorug05G0142100 Rorug05G0142200 Rorug05G0142400 Rorug05G0142500
rosa_samantha	Rh5AG233300 Rh5AG233400 Rh5BG233800 Rh5BG233900 Rh5CG263700 Rh5CG264000 Rh5DG240700 Rh5DG240800
rosa_wichuraiana	Rw5G021570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AciI	CCGC	2 cut(s)	102, 147
AcsI	RAATTY	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	52, 178
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AleI	CACNNNNGTG	1 cut(s)	161
Alw21I	GWGCWC	1 cut(s)	158
AlwNI	CAGNNNCTG	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	158
BccI	CCATC	2 cut(s)	53, 293
BceAI	ACGGC	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	135
BmsI	GCATC	2 cut(s)	27, 267
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	158
BspACI	CCGC	2 cut(s)	102, 147
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	135
BspQI	GCTCTTC	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	363
Bst6I	CTCTTC	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	325
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 153, 353
BstXI	CCANNNNNNTGG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	356
CaiI	CAGNNNCTG	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	134
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	4 cut(s)	64, 245, 265, 315
CviKI_1	RGCY	4 cut(s)	64, 245, 265, 315
DdeI	CTNAG	1 cut(s)	138
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	134
EcoO109I	RGGNCCY	1 cut(s)	134
FaeI	CATG	1 cut(s)	283
FaiI	YATR	5 cut(s)	112, 114, 131, 281, 389
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FatI	CATG	1 cut(s)	279
FauI	CCCGC	1 cut(s)	140
FauNDI	CATATG	1 cut(s)	112
FokI	GGATG	1 cut(s)	332
Hin1II	CATG	1 cut(s)	283
HinfI	GANTC	2 cut(s)	88, 105
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	141, 319
Hpy188III	TCNNGA	2 cut(s)	334, 379
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	2 cut(s)	38, 44
HpyCH4V	TGCA	2 cut(s)	18, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 153, 353
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	283
LguI	GCTCTTC	1 cut(s)	146
LpnPI	CCDG	5 cut(s)	50, 55, 185, 279, 344
LweI	GCATC	2 cut(s)	27, 267
MaeIII	GTNAC	1 cut(s)	11
MboII	GAAGA	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	2 cut(s)	47, 342
MlyI	GAGTC	1 cut(s)	99
MnlI	CCTC	4 cut(s)	73, 147, 283, 305
MslI	CAYNNNNRTG	2 cut(s)	161, 278
MwoI	GCNNNNNNNGC	3 cut(s)	122, 153, 353
NdeI	CATATG	1 cut(s)	112
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	1 cut(s)	135
OliI	CACNNNNGTG	1 cut(s)	161
PciSI	GCTCTTC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
PpuMI	RGGWCCY	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	134
PspPPI	RGGWCCY	1 cut(s)	134
PstNI	CAGNNNCTG	1 cut(s)	368
RseI	CAYNNNNRTG	2 cut(s)	161, 278
SapI	GCTCTTC	1 cut(s)	146
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	3 cut(s)	13, 74, 174
SfaNI	GCATC	2 cut(s)	27, 267
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	2 cut(s)	161, 278
Sse9I	AATT	2 cut(s)	47, 342
SsiI	CCGC	2 cut(s)	102, 147
TaqI	TCGA	3 cut(s)	33, 96, 333
TasI	AATT	2 cut(s)	47, 342
TfiI	GAWTC	1 cut(s)	88
TscAI	CASTG	1 cut(s)	363
TspDTI	ATGAA	1 cut(s)	212
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.