Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000078.1

Orthogroup ID

OG0005562

Physical Location & Seq

Genomic Coordinates Reverse (-)

19084 .. 20503

Gene Structure 1420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atgcatgaggatgactactactcgatcaaagctgcaaatcttcatgagcccgctgcagaagtagtattcactcccaagcttaccgctacttccaacatgacccaaagtcatgtgttatcattcaaccaccagcagcatgatcaggaggttggagtgaagtcgttgcaaggccggagtggcggtgatgattgctataatggtcacgaaccttcctctgcagcttcgcagccaagttcccgatggaatccaaccccagagcagttacgggttctggatgagctgtacggacatggattaaagacaccgacggcacagcaaatccgacaagtgactgcacggcttcgacactttggaaagattgaaggcaagaatgtcttctactggtttcagaaccaccgagcgagggagagacagaagagacgaagagaacccatgtccatgcgtcagtatcactctaaggaacaacaactttggagtaacaaagaatctgcaggagctgcaggactgagaaggtcaggtactcttgaaattgagcaccagaataaatggacactatcaaactgcggtgttcttgctgatcaggaattatctccagggttgcggaagaggatgagcatggtgaagggtaattactccggtcaattggaggagcaatcctattcagctacacagaccctggaagcacgcgcagctacattaatatacccaaagctcttggactatcatcatccccattatgattatgattatgattatgattacggtactgtgttgagtgcacccaatatttacaaaggagcagaaagtagattagaagctcaaactctggagctctttccacttgagagcgacaatgttaagggtgttaatgaatcacctatgatcagaactacaaacatagacagtaataaagacttcatggcagacctatattttcaatttctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

315

Amino Acids

36.11

Weight (kDa)

6.54

Isoelectric Point (pI)

63.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	79 - 138	2.2e-13	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005562)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450741 RchiOBHm_Chr3g0450831 RchiOBHm_Chr3g0450921 RchiOBHm_Chr3g0450931
rosa_laevigata	RLG00000025699 RLG00000025703 RLG00000025706
rosa_multiflora	Rmu_sc0000078.1_g000007
rosa_roxburghii	Rroxscaffold_6G00428400 Rroxscaffold_6G00428530 Rroxscaffold_7G00179190
rosa_rugosa	Rorug02G0630300 Rorug02G0630700
rosa_samantha	Rh3AG031000 Rh3AG031300 Rh3AG032100 Rh3AG033000 Rh3BG031400 Rh3BG031800 Rh3BG032500 Rh3BG033300 Rh3CG030200 Rh3CG030600 Rh3CG031200 Rh3CG032100 Rh3DG031200 Rh3DG031500 Rh3DG032100 Rh3DG033100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	687
AciI	CCGC	5 cut(s)	51, 84, 180, 564, 601
AfaI	GTAC	3 cut(s)	284, 520, 766
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	4 cut(s)	124, 362, 527, 938
AhdI	GACNNNNNGTC	1 cut(s)	105
AjnI	CCWGG	2 cut(s)	592, 675
Alw21I	GWGCWC	3 cut(s)	537, 781, 834
Alw26I	GTCTC	2 cut(s)	403, 412
Alw44I	GTGCAC	1 cut(s)	777
AlwNI	CAGNNNCTG	2 cut(s)	497, 676
AoxI	GGCC	1 cut(s)	169
ApaLI	GTGCAC	1 cut(s)	777
ApeKI	GCWGC	7 cut(s)	32, 53, 133, 218, 226, 497, 689
AseI	ATTAAT	1 cut(s)	698
Asp700I	GAANNNNTTC	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	689
AsuHPI	GGTGA	3 cut(s)	194, 631, 867
BaeGI	GKGCMC	1 cut(s)	781
BanII	GRGCYC	2 cut(s)	51, 834
BarI	GAAGNNNNNNTAC	4 cut(s)	502, 534, 614, 646
BbsI	GAAGAC	1 cut(s)	367
Bbv12I	GWGCWC	3 cut(s)	537, 781, 834
BbvI	GCAGC	7 cut(s)	19, 40, 145, 230, 238, 484, 701
BccI	CCATC	1 cut(s)	234
BceAI	ACGGC	2 cut(s)	324, 353
BciT130I	CCWGG	2 cut(s)	594, 677
BclI	TGATCA	3 cut(s)	139, 577, 882
BcoDI	GTCTC	2 cut(s)	403, 412
BfmI	CTRYAG	4 cut(s)	54, 216, 489, 498
BglI	GCCNNNNNGGC	1 cut(s)	177
BisI	GCNGC	7 cut(s)	33, 54, 134, 219, 227, 498, 690
BlsI	GCNGC	7 cut(s)	34, 55, 135, 220, 228, 499, 691
Bme1390I	CCNGG	2 cut(s)	594, 677
BmeRI	GACNNNNNGTC	1 cut(s)	105
BmrFI	CCNGG	2 cut(s)	594, 677
BpiI	GAAGAC	1 cut(s)	367
BpmI	CTGGAG	2 cut(s)	576, 848
BpuEI	CTTGAG	1 cut(s)	863
BsaJI	CCNNGG	2 cut(s)	593, 675
BsaWI	WCCGGW	1 cut(s)	635
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	386
BseBI	CCWGG	2 cut(s)	594, 677
BseDI	CCNNGG	2 cut(s)	593, 675
BseGI	GGATG	4 cut(s)	16, 280, 615, 727
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	1 cut(s)	662
BseSI	GKGCMC	1 cut(s)	781
BseXI	GCAGC	7 cut(s)	19, 40, 145, 230, 238, 484, 701
BsgI	GTGCAG	1 cut(s)	318
Bsh1236I	CGCG	1 cut(s)	687
BshFI	GGCC	1 cut(s)	171
BsiHKAI	GWGCWC	3 cut(s)	537, 781, 834
BsiSI	CCGG	2 cut(s)	172, 636
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	2 cut(s)	403, 412
BsmBI	CGTCTC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	171
Bsp1286I	GDGCHC	4 cut(s)	51, 537, 781, 834
Bsp143I	GATC	4 cut(s)	24, 139, 577, 882
BspACI	CCGC	5 cut(s)	51, 84, 180, 564, 601
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	498
BspFNI	CGCG	1 cut(s)	687
BspHI	TCATGA	1 cut(s)	43
BspMAI	CTGCAG	4 cut(s)	58, 220, 493, 502
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	2 cut(s)	593, 675
BssMI	GATC	4 cut(s)	24, 139, 577, 882
Bst2UI	CCWGG	2 cut(s)	594, 677
Bst4CI	ACNGT	3 cut(s)	764, 769, 905
Bst6I	CTCTTC	3 cut(s)	410, 418, 599
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	51, 685
BstDEI	CTNAG	2 cut(s)	456, 506
BstF5I	GGATG	4 cut(s)	16, 280, 615, 727
BstFNI	CGCG	1 cut(s)	687
BstHHI	GCGC	1 cut(s)	689
BstKTI	GATC	4 cut(s)	27, 142, 580, 885
BstMAI	GTCTC	2 cut(s)	403, 412
BstMBI	GATC	4 cut(s)	24, 139, 577, 882
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 497, 689
BstNI	CCWGG	2 cut(s)	594, 677
BstSCI	CCNGG	2 cut(s)	592, 675
BstSFI	CTRYAG	4 cut(s)	54, 216, 489, 498
BstSLI	GKGCMC	1 cut(s)	781
BstUI	CGCG	1 cut(s)	687
BstV1I	GCAGC	7 cut(s)	19, 40, 145, 230, 238, 484, 701
BstV2I	GAAGAC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	4 cut(s)	16, 280, 615, 727
Cac8I	GCNNGC	2 cut(s)	51, 685
CaiI	CAGNNNCTG	2 cut(s)	497, 676
CciI	TCATGA	1 cut(s)	43
CfoI	GCGC	1 cut(s)	689
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	3 cut(s)	283, 519, 765
CviQI	GTAC	3 cut(s)	283, 519, 765
DdeI	CTNAG	2 cut(s)	456, 506
DpnI	GATC	4 cut(s)	26, 141, 579, 884
DpnII	GATC	4 cut(s)	24, 139, 577, 882
DriI	GACNNNNNGTC	1 cut(s)	105
Eam1104I	CTCTTC	3 cut(s)	410, 418, 599
Eam1105I	GACNNNNNGTC	1 cut(s)	105
EarI	CTCTTC	3 cut(s)	410, 418, 599
Ecl136II	GAGCTC	1 cut(s)	832
Eco24I	GRGCYC	2 cut(s)	51, 834
Eco53kI	GAGCTC	1 cut(s)	832
EcoICRI	GAGCTC	1 cut(s)	832
EcoRII	CCWGG	2 cut(s)	592, 675
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	51, 834
Esp3I	CGTCTC	1 cut(s)	412
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FauI	CCCGC	1 cut(s)	58
FbaI	TGATCA	3 cut(s)	139, 577, 882
Fnu4HI	GCNGC	7 cut(s)	33, 54, 134, 219, 227, 498, 690
FokI	GGATG	4 cut(s)	23, 287, 622, 714
FriOI	GRGCYC	2 cut(s)	51, 834
Fsp4HI	GCNGC	7 cut(s)	33, 54, 134, 219, 227, 498, 690
GlaI	GCGC	1 cut(s)	688
GluI	GCNGC	7 cut(s)	33, 54, 134, 219, 227, 498, 690
GsuI	CTGGAG	2 cut(s)	576, 848
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	2 cut(s)	172, 636
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	1 cut(s)	689
Hin6I	GCGC	1 cut(s)	687
HinP1I	GCGC	1 cut(s)	687
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	3 cut(s)	244, 485, 872
HpaII	CCGG	2 cut(s)	172, 636
HphI	GGTGA	3 cut(s)	194, 631, 867
Hpy166II	GTNNAC	1 cut(s)	779
Hpy188I	TCNGA	3 cut(s)	323, 390, 887
Hpy188III	TCNNGA	8 cut(s)	44, 143, 203, 237, 272, 524, 581, 827
Hpy8I	GTNNAC	1 cut(s)	779
Hpy99I	CGWCG	1 cut(s)	310
HpyAV	CCTTC	4 cut(s)	219, 356, 504, 616
HpyCH4III	ACNGT	3 cut(s)	764, 769, 905
HpyCH4V	TGCA	9 cut(s)	4, 35, 56, 166, 218, 335, 491, 500, 779
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 497, 689
HpyF3I	CTNAG	2 cut(s)	456, 506
HspAI	GCGC	1 cut(s)	687
Ksp22I	TGATCA	3 cut(s)	139, 577, 882
Kzo9I	GATC	4 cut(s)	24, 139, 577, 882
LmnI	GCTCC	4 cut(s)	494, 649, 797, 829
Lsp1109I	GCAGC	7 cut(s)	19, 40, 145, 230, 238, 484, 701
MaeIII	GTNAC	4 cut(s)	200, 261, 328, 476
MalI	GATC	4 cut(s)	26, 141, 579, 884
MboI	GATC	4 cut(s)	24, 139, 577, 882
MboII	GAAGA	5 cut(s)	32, 367, 427, 435, 616
MfeI	CAATTG	1 cut(s)	641
MhlI	GDGCHC	4 cut(s)	51, 537, 781, 834
MluCI	AATT	5 cut(s)	528, 584, 628, 641, 938
MmeI	TCCRAC	4 cut(s)	117, 130, 272, 346
MnlI	CCTC	5 cut(s)	139, 223, 396, 600, 640
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	4 cut(s)	296, 698, 858, 867
MslI	CAYNNNNRTG	2 cut(s)	9, 437
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	2 cut(s)	172, 636
MspR9I	CCNGG	2 cut(s)	594, 677
MunI	CAATTG	1 cut(s)	641
MvaI	CCWGG	2 cut(s)	594, 677
MvnI	CGCG	1 cut(s)	687
MwoI	GCNNNNNNNGC	3 cut(s)	177, 497, 689
NdeII	GATC	4 cut(s)	24, 139, 577, 882
NmuCI	GTSAC	2 cut(s)	200, 328
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	3 cut(s)	244, 485, 872
PkrI	GCNGC	7 cut(s)	34, 55, 135, 220, 228, 499, 691
PshBI	ATTAAT	1 cut(s)	698
Psp124BI	GAGCTC	1 cut(s)	834
Psp6I	CCWGG	2 cut(s)	592, 675
PspGI	CCWGG	2 cut(s)	592, 675
PstI	CTGCAG	4 cut(s)	58, 220, 493, 502
PstNI	CAGNNNCTG	2 cut(s)	497, 676
RsaI	GTAC	3 cut(s)	284, 520, 766
RsaNI	GTAC	3 cut(s)	283, 519, 765
RseI	CAYNNNNRTG	2 cut(s)	9, 437
SacI	GAGCTC	1 cut(s)	834
SaqAI	TTAA	4 cut(s)	296, 698, 858, 867
SatI	GCNGC	7 cut(s)	33, 54, 134, 219, 227, 498, 690
Sau3AI	GATC	4 cut(s)	24, 139, 577, 882
ScrFI	CCNGG	2 cut(s)	594, 677
SduI	GDGCHC	4 cut(s)	51, 537, 781, 834
SfcI	CTRYAG	4 cut(s)	54, 216, 489, 498
SmiMI	CAYNNNNRTG	2 cut(s)	9, 437
SmlI	CTYRAG	1 cut(s)	842
SmoI	CTYRAG	1 cut(s)	842
Sse9I	AATT	5 cut(s)	528, 584, 628, 641, 938
SsiI	CCGC	5 cut(s)	51, 84, 180, 564, 601
SspI	AATATT	1 cut(s)	787
SstI	GAGCTC	1 cut(s)	834
StyD4I	CCNGG	2 cut(s)	592, 675
TaaI	ACNGT	3 cut(s)	764, 769, 905
TaqI	TCGA	2 cut(s)	23, 343
TasI	AATT	5 cut(s)	528, 584, 628, 641, 938
TfiI	GAWTC	3 cut(s)	244, 485, 872
Tru1I	TTAA	4 cut(s)	296, 698, 858, 867
Tru9I	TTAA	4 cut(s)	296, 698, 858, 867
TseFI	GTSAC	2 cut(s)	200, 328
TseI	GCWGC	7 cut(s)	32, 53, 133, 218, 226, 497, 689
Tsp45I	GTSAC	2 cut(s)	200, 328
TspDTI	ATGAA	3 cut(s)	32, 885, 907
TspGWI	ACGGA	1 cut(s)	300
VneI	GTGCAC	1 cut(s)	777
VspI	ATTAAT	1 cut(s)	698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	374
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.