Rmu_sc0000109.1_g000024

Putative serine esterase (DUF676)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000109.1
OG0004186
Physical Location & Seq
Reverse (-)
116280 .. 119685
3406 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1512 bp
atggcctccgctcctctaatccacgcgcgctgtggttactcgcccagattcagtagcagcagtaatcgacggaatggaggaggaggagctctaggttcgtcgccgtcgtcgtcttcgtcgtcgtgttgctcttcttcgtatttggccttctcttctggggcgtataattgctggaggaaccaaggactcagagctcacgctatgaccagtcaggggaattttgcttcttcctccagaggtgttgcgagtgcgggcaagaagcctgatcatcttctcgtacttgttcatggcatattggctaggtatgtcttcttccaactcgattttgattttgagttttcaggggcgtataattgctggaggaaccaaggactcagagctcacgctatgaccagtcaggggagttttgcttcttcctccagaggtgttgcgagtgcggggaagaagcccgatcatcttctcgtacttgttcatggcatattggctagcccaagtgattggacatacgtggaagcagaattacggaagcgtctaggcagaagcttcttaatctatgcaagttcatgcaacacgtacacaaaaacttttgccgggattgatggagctggaaagagactggcagatgaagtcatgcaagttgtgcaaaagacagatagcctcaagaaaatctcattcttagcccattctctagggggcttgtttgcaagatacgcaatatctgttctttacagacccagtgatattcccaattcacctcttgtaaattcaaaagcaacacactctttgagacgaggaaagattgccggtttggagccaatcaattttgtaacattggcaaccccacatcttggggtgagggggaaaaagcagcttccatttcttttaggcgtacctttgttagaaaagctggctgcgccaattgctcctattgttgttggtcgaactggtagtcagctgttcctcactgatggtaaacctgaaaaaccaccgcttcttttgagaatggcatctgattgtgaagatggaaattttgtatctgcattgggatcgtttagatctcggattctttatgctaatgtatcttatgatcatatggttggttggcgtacatcatccataaggagagagacagaaatttttaagcctcctcgccggtctttggttggctacaagcatgttgtagatgtagagtattgtcccccagtttcctctgacggcccccattttcctcctgaagcagctaaggcgaaggaggcagcccaaagtaaacccaaccaacagaacaccttggaatatcatgaaattgttgaagatgaaatgatacgaggcttacaacagttgggatggaaaaaggttgatgtcagctttcattctgcaccttggccattcttcgcccacaacaacattcatgtaaaaaatgaatggcttcacaatgctggtgctggagtggttgcacacgttgctgacactctaaagcaacaagaatcctccacattgactgccagcttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF676

Protein Analysis

503

Amino Acids

54.72

Weight (kDa)

9.59

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF676 PF05057 148 - 370 1.7e-65 Putative serine esterase (DUF676)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 848
AccBSI CCGCTC 1 cut(s) 11
AccII CGCG 2 cut(s) 26, 28
AciI CCGC 4 cut(s) 9, 251, 437, 989
AclWI GGATC 1 cut(s) 1054
AcoI YGGCCR 1 cut(s) 1382
AcsI RAATTY 4 cut(s) 217, 763, 1027, 1134
AcuI CTGAAG 1 cut(s) 1254
AfaI GTAC 5 cut(s) 279, 465, 575, 891, 1108
AfiI CCNNNNNNNGG 4 cut(s) 213, 399, 848, 1159
AflIII ACRYGT 2 cut(s) 570, 1456
AgsI TTSAA 2 cut(s) 768, 1310
Alw21I GWGCWC 3 cut(s) 91, 196, 382
Alw26I GTCTC 3 cut(s) 607, 781, 1121
AlwI GGATC 1 cut(s) 1054
AoxI GGCC 4 cut(s) 3, 144, 1216, 1382
ApeKI GCWGC 5 cut(s) 57, 868, 911, 1238, 1256
ApoI RAATTY 4 cut(s) 217, 763, 1027, 1134
ArsI GACNNNNNNTTYG 2 cut(s) 934, 966
Asp700I GAANNNNTTC 1 cut(s) 1425
AspLEI GCGC 3 cut(s) 28, 30, 916
AspS9I GGNCC 1 cut(s) 1217
AsuC2I CCSGG 1 cut(s) 592
AsuHPI GGTGA 2 cut(s) 744, 865
AsuNHI GCTAGC 1 cut(s) 485
BalI TGGCCA 1 cut(s) 1384
BanII GRGCYC 3 cut(s) 91, 196, 382
BarI GAAGNNNNNNTAC 6 cut(s) 131, 163, 296, 328, 504, 536
BbsI GAAGAC 2 cut(s) 105, 301
Bbv12I GWGCWC 3 cut(s) 91, 196, 382
BbvI GCAGC 5 cut(s) 69, 880, 898, 1250, 1268
BccI CCATC 4 cut(s) 593, 962, 1016, 1338
BceAI ACGGC 2 cut(s) 88, 1231
BcgI CGANNNNNNTGC 2 cut(s) 1029, 1063
BclI TGATCA 2 cut(s) 265, 1087
BcnI CCSGG 1 cut(s) 592
BcoDI GTCTC 3 cut(s) 607, 781, 1121
BfaI CTAG 5 cut(s) 92, 300, 486, 533, 689
BglII AGATCT 1 cut(s) 1055
BisI GCNGC 5 cut(s) 58, 869, 912, 1239, 1257
BlsI GCNGC 5 cut(s) 59, 870, 913, 1240, 1258
Bme1390I CCNGG 1 cut(s) 592
BmgT120I GGNCC 1 cut(s) 1217
BmiI GGNNCC 4 cut(s) 179, 365, 813, 1219
BmrFI CCNGG 1 cut(s) 592
BmrI ACTGGG 2 cut(s) 729, 1196
BmsI GCATC 1 cut(s) 1016
BmtI GCTAGC 1 cut(s) 489
BmuI ACTGGG 2 cut(s) 729, 1196
BpiI GAAGAC 2 cut(s) 105, 301
BpmI CTGGAG 5 cut(s) 193, 217, 379, 403, 1464
Bpu10I CCTNAGC 1 cut(s) 1242
BpuEI CTTGAG 1 cut(s) 644
BpuMI CCSGG 1 cut(s) 592
BsaAI YACGTR 2 cut(s) 508, 573
BsaJI CCNNGG 4 cut(s) 181, 367, 1287, 1379
Bsc4I CCNNNNNNNGG 4 cut(s) 213, 399, 848, 1159
Bse118I RCCGGY 2 cut(s) 803, 1152
Bse1I ACTGG 6 cut(s) 207, 393, 621, 735, 949, 1202
BseDI CCNNGG 4 cut(s) 181, 367, 1287, 1379
BseGI GGATG 2 cut(s) 1112, 1349
BseLI CCNNNNNNNGG 4 cut(s) 213, 399, 848, 1159
BseMII CTCAG 2 cut(s) 202, 388
BseNI ACTGG 6 cut(s) 207, 393, 621, 735, 949, 1202
BsePI GCGCGC 1 cut(s) 26
BseRI GAGGAG 4 cut(s) 93, 96, 99, 1137
BseXI GCAGC 5 cut(s) 69, 880, 898, 1250, 1268
BsgI GTGCAG 1 cut(s) 1359
Bsh1236I CGCG 2 cut(s) 26, 28
BshFI GGCC 4 cut(s) 5, 146, 1218, 1384
BsiHKAI GWGCWC 3 cut(s) 91, 196, 382
BsiSI CCGG 3 cut(s) 591, 804, 1153
BslFI GGGAC 1 cut(s) 1182
BslI CCNNNNNNNGG 4 cut(s) 213, 399, 848, 1159
BsmAI GTCTC 3 cut(s) 607, 781, 1121
BsmBI CGTCTC 1 cut(s) 781
BsmFI GGGAC 1 cut(s) 1182
BsnI GGCC 4 cut(s) 5, 146, 1218, 1384
Bsp1286I GDGCHC 3 cut(s) 91, 196, 382
Bsp143I GATC 5 cut(s) 265, 451, 1046, 1055, 1087
BspACI CCGC 4 cut(s) 9, 251, 437, 989
BspANI GGCC 4 cut(s) 5, 146, 1218, 1384
BspCNI CTCAG 2 cut(s) 201, 387
BspFNI CGCG 2 cut(s) 26, 28
BspHI TCATGA 1 cut(s) 1297
BspLI GGNNCC 4 cut(s) 179, 365, 813, 1219
BspOI GCTAGC 1 cut(s) 489
BspPI GGATC 1 cut(s) 1054
BspQI GCTCTTC 1 cut(s) 136
BsrBI CCGCTC 1 cut(s) 11
BsrFI RCCGGY 2 cut(s) 803, 1152
BsrI ACTGG 6 cut(s) 207, 393, 621, 735, 949, 1202
BssAI RCCGGY 2 cut(s) 803, 1152
BssECI CCNNGG 4 cut(s) 181, 367, 1287, 1379
BssHII GCGCGC 1 cut(s) 26
BssMI GATC 5 cut(s) 265, 451, 1046, 1055, 1087
BssT1I CCWWGG 4 cut(s) 181, 367, 1287, 1379
Bst4CI ACNGT 1 cut(s) 1338
Bst6I CTCTTC 2 cut(s) 136, 157
BstAPI GCANNNNNTGC 2 cut(s) 640, 1460
BstBAI YACGTR 2 cut(s) 508, 573
BstC8I GCNNGC 5 cut(s) 28, 253, 487, 909, 1504
BstDEI CTNAG 4 cut(s) 188, 374, 676, 1242
BstF5I GGATG 2 cut(s) 1112, 1349
BstFNI CGCG 2 cut(s) 26, 28
BstHHI GCGC 3 cut(s) 28, 30, 916
BstKTI GATC 5 cut(s) 268, 454, 1049, 1058, 1090
BstMAI GTCTC 3 cut(s) 607, 781, 1121
BstMBI GATC 5 cut(s) 265, 451, 1046, 1055, 1087
BstMWI GCNNNNNNNGC 7 cut(s) 640, 710, 913, 920, 1244, 1253, 1460
BstNSI RCATGY 1 cut(s) 1178
BstSCI CCNGG 1 cut(s) 590
BstUI CGCG 2 cut(s) 26, 28
BstV1I GCAGC 5 cut(s) 69, 880, 898, 1250, 1268
BstV2I GAAGAC 2 cut(s) 105, 301
BstX2I RGATCY 1 cut(s) 1055
BstXI CCANNNNNNTGG 1 cut(s) 498
BstYI RGATCY 1 cut(s) 1055
BsuRI GGCC 4 cut(s) 5, 146, 1218, 1384
BtsCI GGATG 2 cut(s) 1112, 1349
BtsIMutI CAGTG 2 cut(s) 742, 963
Cac8I GCNNGC 5 cut(s) 28, 253, 487, 909, 1504
CciI TCATGA 1 cut(s) 1297
CfoI GCGC 3 cut(s) 28, 30, 916
Cfr10I RCCGGY 2 cut(s) 803, 1152
Cfr13I GGNCC 1 cut(s) 1217
CseI GACGC 1 cut(s) 518
Csp6I GTAC 5 cut(s) 278, 464, 574, 890, 1107
CviAII CATG 7 cut(s) 287, 473, 564, 631, 1175, 1298, 1409
CviQI GTAC 5 cut(s) 278, 464, 574, 890, 1107
DdeI CTNAG 4 cut(s) 188, 374, 676, 1242
DpnI GATC 5 cut(s) 267, 453, 1048, 1057, 1089
DpnII GATC 5 cut(s) 265, 451, 1046, 1055, 1087
EaeI YGGCCR 1 cut(s) 1382
Eam1104I CTCTTC 2 cut(s) 136, 157
EarI CTCTTC 2 cut(s) 136, 157
Ecl136II GAGCTC 3 cut(s) 89, 194, 380
Eco130I CCWWGG 4 cut(s) 181, 367, 1287, 1379
Eco24I GRGCYC 3 cut(s) 91, 196, 382
Eco53kI GAGCTC 3 cut(s) 89, 194, 380
Eco57I CTGAAG 1 cut(s) 1254
EcoICRI GAGCTC 3 cut(s) 89, 194, 380
EcoT14I CCWWGG 4 cut(s) 181, 367, 1287, 1379
EcoT38I GRGCYC 3 cut(s) 91, 196, 382
ErhI CCWWGG 4 cut(s) 181, 367, 1287, 1379
Esp3I CGTCTC 1 cut(s) 781
FaeI CATG 7 cut(s) 290, 476, 567, 634, 1178, 1301, 1412
FaqI GGGAC 1 cut(s) 1182
FatI CATG 7 cut(s) 286, 472, 563, 630, 1174, 1297, 1408
FauI CCCGC 2 cut(s) 244, 430
FauNDI CATATG 1 cut(s) 1092
FbaI TGATCA 2 cut(s) 265, 1087
Fnu4HI GCNGC 5 cut(s) 58, 869, 912, 1239, 1257
FokI GGATG 2 cut(s) 1099, 1356
FriOI GRGCYC 3 cut(s) 91, 196, 382
Fsp4HI GCNGC 5 cut(s) 58, 869, 912, 1239, 1257
FspBI CTAG 5 cut(s) 92, 300, 486, 533, 689
GlaI GCGC 3 cut(s) 27, 29, 915
GluI GCNGC 5 cut(s) 58, 869, 912, 1239, 1257
GsuI CTGGAG 5 cut(s) 193, 217, 379, 403, 1464
HaeIII GGCC 4 cut(s) 5, 146, 1218, 1384
HapII CCGG 3 cut(s) 591, 804, 1153
HgaI GACGC 1 cut(s) 518
HhaI GCGC 3 cut(s) 28, 30, 916
Hin1II CATG 7 cut(s) 290, 476, 567, 634, 1178, 1301, 1412
Hin6I GCGC 3 cut(s) 26, 28, 914
HinP1I GCGC 3 cut(s) 26, 28, 914
HindIII AAGCTT 1 cut(s) 541
HinfI GANTC 5 cut(s) 48, 186, 372, 1063, 1484
HpaII CCGG 3 cut(s) 591, 804, 1153
HphI GGTGA 2 cut(s) 744, 865
Hpy166II GTNNAC 3 cut(s) 576, 974, 1268
Hpy188I TCNGA 5 cut(s) 191, 377, 1012, 1062, 1213
Hpy188III TCNNGA 5 cut(s) 234, 420, 661, 1232, 1298
Hpy8I GTNNAC 3 cut(s) 576, 974, 1268
Hpy99I CGWCG 6 cut(s) 72, 103, 109, 112, 121, 124
HpyAV CCTTC 2 cut(s) 157, 1243
HpyCH4III ACNGT 1 cut(s) 1338
HpyCH4IV ACGT 3 cut(s) 507, 572, 1458
HpyCH4V TGCA 8 cut(s) 557, 567, 634, 643, 704, 1040, 1376, 1454
HpyF10VI GCNNNNNNNGC 7 cut(s) 640, 710, 913, 920, 1244, 1253, 1460
HpyF3I CTNAG 4 cut(s) 188, 374, 676, 1242
HpySE526I ACGT 3 cut(s) 507, 572, 1458
Hsp92II CATG 7 cut(s) 290, 476, 567, 634, 1178, 1301, 1412
HspAI GCGC 3 cut(s) 26, 28, 914
Ksp22I TGATCA 2 cut(s) 265, 1087
Kzo9I GATC 5 cut(s) 265, 451, 1046, 1055, 1087
LguI GCTCTTC 1 cut(s) 136
LmnI GCTCC 5 cut(s) 16, 86, 602, 811, 928
Lsp1109I GCAGC 5 cut(s) 69, 880, 898, 1250, 1268
LweI GCATC 1 cut(s) 1016
MaeI CTAG 5 cut(s) 92, 300, 486, 533, 689
MaeII ACGT 3 cut(s) 507, 572, 1458
MaeIII GTNAC 2 cut(s) 35, 826
MalI GATC 5 cut(s) 267, 453, 1048, 1057, 1089
MbiI CCGCTC 1 cut(s) 11
MboI GATC 5 cut(s) 265, 451, 1046, 1055, 1087
MfeI CAATTG 1 cut(s) 918
MflI RGATCY 1 cut(s) 1055
MhlI GDGCHC 3 cut(s) 91, 196, 382
MlsI TGGCCA 1 cut(s) 1384
MluNI TGGCCA 1 cut(s) 1384
MlyI GAGTC 2 cut(s) 180, 366
MmeI TCCRAC 1 cut(s) 340
Mox20I TGGCCA 1 cut(s) 1384
MroXI GAANNNNTTC 1 cut(s) 1425
MscI TGGCCA 1 cut(s) 1384
MseI TTAA 2 cut(s) 548, 1140
Msp20I TGGCCA 1 cut(s) 1384
MspA1I CMGCKG 1 cut(s) 955
MspI CCGG 3 cut(s) 591, 804, 1153
MspR9I CCNGG 1 cut(s) 592
MunI CAATTG 1 cut(s) 918
MvnI CGCG 2 cut(s) 26, 28
MwoI GCNNNNNNNGC 7 cut(s) 640, 710, 913, 920, 1244, 1253, 1460
NciI CCSGG 1 cut(s) 592
NdeI CATATG 1 cut(s) 1092
NdeII GATC 5 cut(s) 265, 451, 1046, 1055, 1087
NheI GCTAGC 1 cut(s) 485
NlaIII CATG 7 cut(s) 290, 476, 567, 634, 1178, 1301, 1412
NlaIV GGNNCC 4 cut(s) 179, 365, 813, 1219
NspI RCATGY 1 cut(s) 1178
PagI TCATGA 1 cut(s) 1297
PauI GCGCGC 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 4 cut(s) 104, 107, 113, 116
PdmI GAANNNNTTC 1 cut(s) 1425
PfeI GAWTC 3 cut(s) 48, 1063, 1484
PflMI CCANNNNNTGG 1 cut(s) 848
PkrI GCNGC 5 cut(s) 59, 870, 913, 1240, 1258
PleI GAGTC 2 cut(s) 180, 366
PpsI GAGTC 2 cut(s) 180, 366
Ppu21I YACGTR 2 cut(s) 508, 573
Psp124BI GAGCTC 3 cut(s) 91, 196, 382
PspN4I GGNNCC 4 cut(s) 179, 365, 813, 1219
PspPI GGNCC 1 cut(s) 1217
PsuI RGATCY 1 cut(s) 1055
PteI GCGCGC 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 955
RsaI GTAC 5 cut(s) 279, 465, 575, 891, 1108
RsaNI GTAC 5 cut(s) 278, 464, 574, 890, 1107
SacI GAGCTC 3 cut(s) 91, 196, 382
SapI GCTCTTC 1 cut(s) 136
SaqAI TTAA 2 cut(s) 548, 1140
SatI GCNGC 5 cut(s) 58, 869, 912, 1239, 1257
Sau3AI GATC 5 cut(s) 265, 451, 1046, 1055, 1087
Sau96I GGNCC 1 cut(s) 1217
SchI GAGTC 2 cut(s) 180, 366
ScrFI CCNGG 1 cut(s) 592
SduI GDGCHC 3 cut(s) 91, 196, 382
SfaNI GCATC 1 cut(s) 1016
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
SsiI CCGC 4 cut(s) 9, 251, 437, 989
SspMI CTAG 5 cut(s) 92, 300, 486, 533, 689
SstI GAGCTC 3 cut(s) 91, 196, 382
StyD4I CCNGG 1 cut(s) 590
StyI CCWWGG 4 cut(s) 181, 367, 1287, 1379
TaaI ACNGT 1 cut(s) 1338
TaiI ACGT 3 cut(s) 510, 575, 1461
TaqI TCGA 3 cut(s) 67, 321, 940
TfiI GAWTC 3 cut(s) 48, 1063, 1484
Tru1I TTAA 2 cut(s) 548, 1140
Tru9I TTAA 2 cut(s) 548, 1140
TscAI CASTG 2 cut(s) 742, 970
TseI GCWGC 5 cut(s) 57, 868, 911, 1238, 1256
TspDTI ATGAA 9 cut(s) 275, 461, 552, 639, 1314, 1329, 1358, 1397, 1434
TspGWI ACGGA 2 cut(s) 85, 538
TspRI CASTG 2 cut(s) 742, 970
Van91I CCANNNNNTGG 1 cut(s) 848
XapI RAATTY 4 cut(s) 217, 763, 1027, 1134
XceI RCATGY 1 cut(s) 1178
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 1425
XspI CTAG 5 cut(s) 92, 300, 486, 533, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.