Rmu_sc0000210.1_g000016

Integral membrane protein DUF92

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000210.1
OG0008669
Physical Location & Seq
Reverse (-)
73270 .. 76814
3545 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 972 bp
atggcattgtcaacactcttgcacatcaaaccacctcctccgtttccttcactaaaatcccaccgctccttcttcccaattctccacccaaaaatctcaatcccaatcccaatccaaaaccctaaacccatcaaacacttcactatgcagaggcctcatgcatccaccactgtgcacagtgctgtctccggcgccttcaccctgatccaatcctcgcccgccacgtggcagtcggcaatcctcagcaacctcctgatcttcgttctgggctctccgattttggtttctgggctctctctttccggcattgctgctgcgtttttgctcggaactctcacttggcgcgcttttgggccatctgggtttctcttggtggcaacctacttcatcattggcacggcggtgacaaaggtgagaatggcacagaaggaggctgagggggtagctgagaagagaaaaggaaggagaggcccaggcagtgttattggatccagtgctgctggttgcatttgcgcttttctcacgatatttctagtaggaggaaaggcatattcccggctctggcaactagggtttgttgccagtttctgtactaagttgagtgacactgtctcaagtgaggtgggaaaggcatatgggaaaacaacgtacttggtaacaacattgaaggtagttccacggggaacagagggagctgtgagtcttgagggaaccattgctggacttttggcatctgttcttcttgcgtttgttggttgtctcatgggtcagataaatggacctgaagcaattatatgtgtaatagcttcccaaatagcaaatgttggtgagagcattataggtgctgctcttcaagacaaggaaggatttcgatggcttaacaatgatgctgtgaatgtcataaacatatccatgggcagcatttttgccgtcttgatgcagcaggcattactcaaaaacttacatatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF92

Protein Analysis

323

Amino Acids

34.13

Weight (kDa)

9.87

Isoelectric Point (pI)

31.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF92 PF01940 87 - 306 3.3e-58 Integral membrane protein DUF92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccBSI CCGCTC 1 cut(s) 66
AccII CGCG 1 cut(s) 345
AciI CCGC 3 cut(s) 64, 219, 401
AclWI GGATC 3 cut(s) 199, 483, 496
AcuI CTGAAG 1 cut(s) 804
AcvI CACGTG 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 2 cut(s) 592, 650
AfiI CCNNNNNNNGG 2 cut(s) 225, 561
AgsI TTSAA 2 cut(s) 667, 854
AjnI CCWGG 1 cut(s) 472
AjuI GAANNNNNNNTTGG 2 cut(s) 322, 354
AleI CACNNNNGTG 2 cut(s) 170, 401
AluBI AGCT 3 cut(s) 446, 695, 806
AluI AGCT 3 cut(s) 446, 695, 806
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 3 cut(s) 190, 616, 764
Alw44I GTGCAC 1 cut(s) 173
AlwI GGATC 3 cut(s) 199, 483, 496
AlwNI CAGNNNCTG 1 cut(s) 588
AoxI GGCC 3 cut(s) 152, 353, 469
ApaLI GTGCAC 1 cut(s) 173
ApeKI GCWGC 6 cut(s) 311, 314, 497, 845, 918, 940
Asp700I GAANNNNTTC 1 cut(s) 867
AspLEI GCGC 4 cut(s) 194, 345, 347, 515
AspS9I GGNCC 3 cut(s) 353, 470, 779
AsuC2I CCSGG 1 cut(s) 556
AsuHPI GGTGA 4 cut(s) 190, 415, 424, 839
AvaII GGWCC 1 cut(s) 779
BaeGI GKGCMC 1 cut(s) 177
BamHI GGATCC 1 cut(s) 488
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 2 cut(s) 272, 294
BbrPI CACGTG 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 177
BbvCI CCTCAGC 2 cut(s) 242, 435
BbvI GCAGC 6 cut(s) 298, 301, 484, 832, 930, 952
BccI CCATC 3 cut(s) 137, 364, 867
BceAI ACGGC 2 cut(s) 414, 914
BciT130I CCWGG 1 cut(s) 474
BcnI CCSGG 1 cut(s) 556
BcoDI GTCTC 3 cut(s) 190, 616, 764
BfaI CTAG 2 cut(s) 533, 569
BfoI RGCGCY 1 cut(s) 195
BisI GCNGC 6 cut(s) 312, 315, 498, 846, 919, 941
BlsI GCNGC 6 cut(s) 313, 316, 499, 847, 920, 942
Bme1390I CCNGG 2 cut(s) 474, 556
Bme18I GGWCC 1 cut(s) 779
BmgT120I GGNCC 3 cut(s) 353, 470, 779
BmiI GGNNCC 3 cut(s) 193, 490, 712
BmrFI CCNGG 2 cut(s) 474, 556
BmsI GCATC 4 cut(s) 170, 740, 877, 927
Bpu10I CCTNAGC 2 cut(s) 242, 435
BpuEI CTTGAG 2 cut(s) 598, 725
BpuMI CCSGG 1 cut(s) 556
BsaAI YACGTR 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 3 cut(s) 472, 677, 912
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 561
Bse1I ACTGG 2 cut(s) 492, 582
Bse3DI GCAATG 2 cut(s) 306, 714
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 3 cut(s) 472, 677, 912
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 2 cut(s) 225, 561
BseMI GCAATG 2 cut(s) 306, 714
BseMII CTCAG 3 cut(s) 256, 426, 438
BseNI ACTGG 2 cut(s) 492, 582
BsePI GCGCGC 1 cut(s) 343
BseRI GAGGAG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 6 cut(s) 298, 301, 484, 832, 930, 952
Bsh1236I CGCG 1 cut(s) 345
BshFI GGCC 3 cut(s) 154, 355, 471
BshNI GGYRCC 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 3 cut(s) 189, 303, 556
BslI CCNNNNNNNGG 2 cut(s) 225, 561
BsmAI GTCTC 3 cut(s) 190, 616, 764
BsnI GGCC 3 cut(s) 154, 355, 471
Bsp1286I GDGCHC 3 cut(s) 177, 272, 294
Bsp143I GATC 3 cut(s) 204, 255, 488
Bsp19I CCATGG 1 cut(s) 912
BspACI CCGC 3 cut(s) 64, 219, 401
BspANI GGCC 3 cut(s) 154, 355, 471
BspCNI CTCAG 3 cut(s) 255, 427, 439
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 3 cut(s) 193, 490, 712
BspPI GGATC 3 cut(s) 199, 483, 496
BspQI GCTCTTC 1 cut(s) 855
BspT107I GGYRCC 1 cut(s) 191
BsrBI CCGCTC 1 cut(s) 66
BsrDI GCAATG 2 cut(s) 306, 714
BsrI ACTGG 2 cut(s) 492, 582
BssECI CCNNGG 3 cut(s) 472, 677, 912
BssHII GCGCGC 1 cut(s) 343
BssMI GATC 3 cut(s) 204, 255, 488
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 912
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 3 cut(s) 172, 179, 610
Bst6I CTCTTC 2 cut(s) 446, 855
BstACI GRCGYC 1 cut(s) 192
BstBAI YACGTR 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 219, 345, 945
BstDEI CTNAG 4 cut(s) 242, 435, 447, 594
BstDSI CCRYGG 2 cut(s) 677, 912
BstF5I GGATG 1 cut(s) 161
BstFNI CGCG 1 cut(s) 345
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 4 cut(s) 194, 345, 347, 515
BstKTI GATC 3 cut(s) 207, 258, 491
BstMAI GTCTC 3 cut(s) 190, 616, 764
BstMBI GATC 3 cut(s) 204, 255, 488
BstNI CCWGG 1 cut(s) 474
BstSCI CCNGG 2 cut(s) 472, 554
BstSLI GKGCMC 1 cut(s) 177
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 6 cut(s) 298, 301, 484, 832, 930, 952
BstX2I RGATCY 1 cut(s) 488
BstYI RGATCY 1 cut(s) 488
BsuRI GGCC 3 cut(s) 154, 355, 471
BtgI CCRYGG 2 cut(s) 677, 912
BtsCI GGATG 1 cut(s) 161
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 5 cut(s) 168, 184, 484, 499, 606
Cac8I GCNNGC 3 cut(s) 219, 345, 945
CaiI CAGNNNCTG 1 cut(s) 588
CfoI GCGC 4 cut(s) 194, 345, 347, 515
Cfr13I GGNCC 3 cut(s) 353, 470, 779
Csp6I GTAC 2 cut(s) 591, 649
CspCI CAANNNNNGTGG 2 cut(s) 603, 638
CviAII CATG 3 cut(s) 158, 763, 913
CviQI GTAC 2 cut(s) 591, 649
DdeI CTNAG 4 cut(s) 242, 435, 447, 594
DinI GGCGCC 1 cut(s) 193
DpnI GATC 3 cut(s) 206, 257, 490
DpnII GATC 3 cut(s) 204, 255, 488
Eam1104I CTCTTC 2 cut(s) 446, 855
EarI CTCTTC 2 cut(s) 446, 855
Eco130I CCWWGG 1 cut(s) 912
Eco147I AGGCCT 1 cut(s) 154
Eco24I GRGCYC 2 cut(s) 272, 294
Eco47I GGWCC 1 cut(s) 779
Eco57I CTGAAG 1 cut(s) 804
Eco72I CACGTG 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 912
EcoT22I ATGCAT 1 cut(s) 163
EcoT38I GRGCYC 2 cut(s) 272, 294
EgeI GGCGCC 1 cut(s) 193
EheI GGCGCC 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 912
FaeI CATG 3 cut(s) 161, 766, 916
FatI CATG 3 cut(s) 157, 762, 912
FauI CCCGC 1 cut(s) 226
FauNDI CATATG 2 cut(s) 634, 966
Fnu4HI GCNGC 6 cut(s) 312, 315, 498, 846, 919, 941
FokI GGATG 1 cut(s) 148
FriOI GRGCYC 2 cut(s) 272, 294
Fsp4HI GCNGC 6 cut(s) 312, 315, 498, 846, 919, 941
FspBI CTAG 2 cut(s) 533, 569
GlaI GCGC 4 cut(s) 193, 344, 346, 514
GluI GCNGC 6 cut(s) 312, 315, 498, 846, 919, 941
HaeII RGCGCY 1 cut(s) 195
HaeIII GGCC 3 cut(s) 154, 355, 471
HapII CCGG 3 cut(s) 189, 303, 556
HhaI GCGC 4 cut(s) 194, 345, 347, 515
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 3 cut(s) 161, 766, 916
Hin6I GCGC 4 cut(s) 192, 343, 345, 513
HinP1I GCGC 4 cut(s) 192, 343, 345, 513
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 1 cut(s) 700
HpaII CCGG 3 cut(s) 189, 303, 556
HphI GGTGA 4 cut(s) 190, 415, 424, 839
Hpy166II GTNNAC 2 cut(s) 12, 175
Hpy188I TCNGA 3 cut(s) 276, 329, 771
Hpy188III TCNNGA 5 cut(s) 253, 523, 704, 854, 934
Hpy8I GTNNAC 2 cut(s) 12, 175
HpyAV CCTTC 7 cut(s) 57, 79, 205, 421, 456, 661, 857
HpyCH4III ACNGT 3 cut(s) 172, 179, 610
HpyCH4IV ACGT 2 cut(s) 224, 647
HpyCH4V TGCA 6 cut(s) 22, 148, 161, 175, 507, 940
HpyF3I CTNAG 4 cut(s) 242, 435, 447, 594
HpySE526I ACGT 2 cut(s) 224, 647
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 3 cut(s) 161, 766, 916
HspAI GCGC 4 cut(s) 192, 343, 345, 513
KasI GGCGCC 1 cut(s) 191
Kzo9I GATC 3 cut(s) 204, 255, 488
LguI GCTCTTC 1 cut(s) 855
LmnI GCTCC 2 cut(s) 71, 692
Lsp1109I GCAGC 6 cut(s) 298, 301, 484, 832, 930, 952
LweI GCATC 4 cut(s) 170, 740, 877, 927
MaeI CTAG 2 cut(s) 533, 569
MaeII ACGT 2 cut(s) 224, 647
MaeIII GTNAC 3 cut(s) 403, 602, 655
MalI GATC 3 cut(s) 206, 257, 490
MbiI CCGCTC 1 cut(s) 66
MboI GATC 3 cut(s) 204, 255, 488
MboII GAAGA 5 cut(s) 64, 250, 463, 731, 842
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 3 cut(s) 177, 272, 294
MluCI AATT 2 cut(s) 78, 789
Mly113I GGCGCC 1 cut(s) 192
MlyI GAGTC 1 cut(s) 709
Mph1103I ATGCAT 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 867
MseI TTAA 1 cut(s) 879
MslI CAYNNNNRTG 3 cut(s) 170, 401, 911
MspI CCGG 3 cut(s) 189, 303, 556
MspR9I CCNGG 2 cut(s) 474, 556
MvaI CCWGG 1 cut(s) 474
MvnI CGCG 1 cut(s) 345
NarI GGCGCC 1 cut(s) 192
NciI CCSGG 1 cut(s) 556
NcoI CCATGG 1 cut(s) 912
NdeI CATATG 2 cut(s) 634, 966
NdeII GATC 3 cut(s) 204, 255, 488
NlaIII CATG 3 cut(s) 161, 766, 916
NlaIV GGNNCC 3 cut(s) 193, 490, 712
NmuCI GTSAC 2 cut(s) 403, 602
NsiI ATGCAT 1 cut(s) 163
OliI CACNNNNGTG 2 cut(s) 170, 401
PauI GCGCGC 1 cut(s) 343
PceI AGGCCT 1 cut(s) 154
PciSI GCTCTTC 1 cut(s) 855
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PdmI GAANNNNTTC 1 cut(s) 867
PflFI GACNNNGTC 1 cut(s) 608
PkrI GCNGC 6 cut(s) 313, 316, 499, 847, 920, 942
PleI GAGTC 1 cut(s) 708
PluTI GGCGCC 1 cut(s) 195
PmaCI CACGTG 1 cut(s) 225
PmlI CACGTG 1 cut(s) 225
PpsI GAGTC 1 cut(s) 708
Ppu21I YACGTR 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 472
PspCI CACGTG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 3 cut(s) 193, 490, 712
PspPI GGNCC 3 cut(s) 353, 470, 779
PstNI CAGNNNCTG 1 cut(s) 588
PsuI RGATCY 1 cut(s) 488
PsyI GACNNNGTC 1 cut(s) 608
PteI GCGCGC 1 cut(s) 343
RsaI GTAC 2 cut(s) 592, 650
RsaNI GTAC 2 cut(s) 591, 649
RseI CAYNNNNRTG 3 cut(s) 170, 401, 911
SapI GCTCTTC 1 cut(s) 855
SaqAI TTAA 1 cut(s) 879
SatI GCNGC 6 cut(s) 312, 315, 498, 846, 919, 941
Sau3AI GATC 3 cut(s) 204, 255, 488
Sau96I GGNCC 3 cut(s) 353, 470, 779
SchI GAGTC 1 cut(s) 709
ScrFI CCNGG 2 cut(s) 474, 556
SduI GDGCHC 3 cut(s) 177, 272, 294
SfaNI GCATC 4 cut(s) 170, 740, 877, 927
SfoI GGCGCC 1 cut(s) 193
SinI GGWCC 1 cut(s) 779
SmiMI CAYNNNNRTG 3 cut(s) 170, 401, 911
SmlI CTYRAG 2 cut(s) 613, 704
SmoI CTYRAG 2 cut(s) 613, 704
Sse9I AATT 2 cut(s) 78, 789
SseBI AGGCCT 1 cut(s) 154
SsiI CCGC 3 cut(s) 64, 219, 401
SspDI GGCGCC 1 cut(s) 191
SspMI CTAG 2 cut(s) 533, 569
StuI AGGCCT 1 cut(s) 154
StyD4I CCNGG 2 cut(s) 472, 554
StyI CCWWGG 1 cut(s) 912
TaaI ACNGT 3 cut(s) 172, 179, 610
TaiI ACGT 2 cut(s) 227, 650
TaqI TCGA 1 cut(s) 871
TasI AATT 2 cut(s) 78, 789
TatI WGTACW 1 cut(s) 590
Tru1I TTAA 1 cut(s) 879
Tru9I TTAA 1 cut(s) 879
TscAI CASTG 5 cut(s) 175, 184, 484, 499, 613
TseFI GTSAC 2 cut(s) 403, 602
TseI GCWGC 6 cut(s) 311, 314, 497, 845, 918, 940
Tsp45I GTSAC 2 cut(s) 403, 602
TspDTI ATGAA 1 cut(s) 376
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 5 cut(s) 175, 184, 484, 499, 613
Tth111I GACNNNGTC 1 cut(s) 608
VneI GTGCAC 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 779
XmnI GAANNNNTTC 1 cut(s) 867
XspI CTAG 2 cut(s) 533, 569
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.