Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000255.1

Orthogroup ID

OG0010768

Physical Location & Seq

Genomic Coordinates Forward (+)

4812 .. 6044

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atggcagtagtggaggacttgtttcacatgggaggaactcaggatactgcagcagctggggaaatagatgacattaagagactagtggtctttaccaaggaaaacaccaacactgccgccctatttggacctcgacctggtcggaagctgttgcagtcatctgatggagatggagatggagatggatcagatgaaaatggggatgaagaaggatcagatggagatggagatggagatggggatggatcagatggaaatggaaatggaaatggagatggatcagatgggggtgacatgaatcgagttgggaaagcatgctcaaaggacgacataacaatcttccaaggggaaacggctccactcccgagtggaattccggcttacacagttcagatcctcaacacttgcgtctcaggttgcagcatctctgacattcacatcaactgtggatggtttagctccgcccgccttgtcaatcctagagtcttcaggcgcatggactacaacgactgcctagtcaatgatggtcagcctcttggccctggacaaaccctctctttccaatatgccaatagctttcgttaccctctttctgtttcgtctgtagcttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

21.3

Weight (kDa)

4.14

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	107 - 204	1.4e-42	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32583 AT1G32583
fragaria_vesca	FvH4_3g00520
malus_domestica	MD00G1057600.v1.1
prunus_persica	Prupe.4G006300_v2.0.a1
pyrus_communis	pycom05g32640
rosa_chinensis	RchiOBHm_Chr5g0000721
rosa_laevigata	RLG00000030889
rosa_multiflora	Rmu_sc0000255.1_g000002 Rmu_sc0011992.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075510
rosa_rugosa	Rorug04G0386100 Rorug04G0386100
rosa_samantha	Rh5AG005900 Rh5BG007600 Rh5BG007700 Rh5CG006400 Rh5DG006300 Rh5DG006400
rosa_wichuraiana	Rw5G000600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	515
AciI	CCGC	3 cut(s)	117, 462, 466
AclWI	GGATC	5 cut(s)	193, 220, 253, 286, 388
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	472
AfiI	CCNNNNNNNGG	1 cut(s)	137
AhdI	GACNNNNNGTC	1 cut(s)	86
AhlI	ACTAGT	1 cut(s)	82
AjnI	CCWGG	2 cut(s)	136, 541
AluBI	AGCT	5 cut(s)	56, 148, 459, 576, 608
AluI	AGCT	5 cut(s)	56, 148, 459, 576, 608
Alw26I	GTCTC	2 cut(s)	73, 415
AlwI	GGATC	5 cut(s)	193, 220, 253, 286, 388
AlwNI	CAGNNNCTG	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	1 cut(s)	538
ApeKI	GCWGC	3 cut(s)	50, 53, 420
ApoI	RAATTY	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	2 cut(s)	128, 539
AsuHPI	GGTGA	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	478
BbvI	GCAGC	3 cut(s)	62, 65, 432
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	2 cut(s)	138, 543
BciVI	GTATCC	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	73, 415
BcuI	ACTAGT	1 cut(s)	82
BfaI	CTAG	3 cut(s)	83, 480, 515
BfmI	CTRYAG	2 cut(s)	48, 603
BfuI	GTATCC	1 cut(s)	37
BisI	GCNGC	4 cut(s)	51, 54, 117, 421
BlsI	GCNGC	4 cut(s)	52, 55, 118, 422
Bme1390I	CCNGG	2 cut(s)	138, 543
Bme18I	GGWCC	1 cut(s)	128
BmeRI	GACNNNNNGTC	1 cut(s)	86
BmeT110I	CYCGRG	1 cut(s)	364
BmgT120I	GGNCC	2 cut(s)	128, 539
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	2 cut(s)	138, 543
BmsI	GCATC	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	478
BsaJI	CCNNGG	3 cut(s)	96, 343, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	138, 543
BseDI	CCNNGG	3 cut(s)	96, 343, 541
BseGI	GGATG	3 cut(s)	208, 247, 455
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	2 cut(s)	53, 426
BseXI	GCAGC	3 cut(s)	62, 65, 432
BseYI	CCCAGC	1 cut(s)	56
BshFI	GGCC	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	2 cut(s)	73, 415
BsmBI	CGTCTC	1 cut(s)	415
BsnI	GGCC	1 cut(s)	540
BsoBI	CYCGRG	1 cut(s)	364
Bsp143I	GATC	5 cut(s)	185, 212, 245, 278, 393
BspACI	CCGC	3 cut(s)	117, 462, 466
BspANI	GGCC	1 cut(s)	540
BspCNI	CTCAG	2 cut(s)	52, 425
BspLI	GGNNCC	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	52
BspPI	GGATC	5 cut(s)	193, 220, 253, 286, 388
BssECI	CCNNGG	3 cut(s)	96, 343, 541
BssMI	GATC	5 cut(s)	185, 212, 245, 278, 393
BssT1I	CCWWGG	2 cut(s)	96, 343
Bst2UI	CCWGG	2 cut(s)	138, 543
Bst4CI	ACNGT	2 cut(s)	388, 446
BstC8I	GCNNGC	2 cut(s)	316, 466
BstDEI	CTNAG	2 cut(s)	39, 412
BstF5I	GGATG	3 cut(s)	208, 247, 455
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	5 cut(s)	188, 215, 248, 281, 396
BstMAI	GTCTC	2 cut(s)	73, 415
BstMBI	GATC	5 cut(s)	185, 212, 245, 278, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	465
BstNI	CCWGG	2 cut(s)	138, 543
BstNSI	RCATGY	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	136, 541
BstSFI	CTRYAG	2 cut(s)	48, 603
BstV1I	GCAGC	3 cut(s)	62, 65, 432
BstV2I	GAAGAC	1 cut(s)	478
BstX2I	RGATCY	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	393
BsuI	GTATCC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	540
BtsCI	GGATG	3 cut(s)	208, 247, 455
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	316, 466
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	2 cut(s)	128, 539
CseI	GACGC	1 cut(s)	397
CsiI	ACCWGGT	1 cut(s)	136
CviAII	CATG	4 cut(s)	28, 295, 315, 496
CviJI	RGCY	9 cut(s)	56, 148, 356, 380, 459, 532, 540, 576, 608
CviKI_1	RGCY	9 cut(s)	56, 148, 356, 380, 459, 532, 540, 576, 608
DdeI	CTNAG	2 cut(s)	39, 412
DpnI	GATC	5 cut(s)	187, 214, 247, 280, 395
DpnII	GATC	5 cut(s)	185, 212, 245, 278, 393
DrdI	GACNNNNNNGTC	1 cut(s)	515
DriI	GACNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	515
Eam1105I	GACNNNNNGTC	1 cut(s)	86
EciI	GGCGGA	1 cut(s)	451
Eco130I	CCWWGG	2 cut(s)	96, 343
Eco47I	GGWCC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	472
Eco88I	CYCGRG	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	372
EcoRII	CCWGG	2 cut(s)	136, 541
EcoT14I	CCWWGG	2 cut(s)	96, 343
ErhI	CCWWGG	2 cut(s)	96, 343
Esp3I	CGTCTC	1 cut(s)	415
FaeI	CATG	4 cut(s)	31, 298, 318, 499
FaiI	YATR	6 cut(s)	29, 296, 316, 332, 497, 567
FatI	CATG	4 cut(s)	27, 294, 314, 495
FauI	CCCGC	1 cut(s)	473
Fnu4HI	GCNGC	4 cut(s)	51, 54, 117, 421
FokI	GGATG	3 cut(s)	215, 254, 462
Fsp4HI	GCNGC	4 cut(s)	51, 54, 117, 421
FspBI	CTAG	3 cut(s)	83, 480, 515
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	4 cut(s)	51, 54, 117, 421
GsaI	CCCAGC	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	540
HapII	CCGG	1 cut(s)	377
HgaI	GACGC	1 cut(s)	397
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	4 cut(s)	31, 298, 318, 499
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HinfI	GANTC	2 cut(s)	298, 483
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	1 cut(s)	302
Hpy188I	TCNGA	8 cut(s)	144, 163, 190, 217, 250, 283, 393, 430
Hpy188III	TCNNGA	2 cut(s)	41, 364
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	2 cut(s)	388, 446
HpyCH4V	TGCA	3 cut(s)	50, 154, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	465
HpyF3I	CTNAG	2 cut(s)	39, 412
Hsp92II	CATG	4 cut(s)	31, 298, 318, 499
HspAI	GCGC	1 cut(s)	493
Kzo9I	GATC	5 cut(s)	185, 212, 245, 278, 393
LmnI	GCTCC	2 cut(s)	361, 464
LpnPI	CCDG	9 cut(s)	26, 42, 123, 150, 390, 399, 475, 528, 555
Lsp1109I	GCAGC	3 cut(s)	62, 65, 432
LweI	GCATC	1 cut(s)	432
MabI	ACCWGGT	1 cut(s)	136
MaeI	CTAG	3 cut(s)	83, 480, 515
MaeIII	GTNAC	2 cut(s)	290, 581
MalI	GATC	5 cut(s)	187, 214, 247, 280, 395
MboI	GATC	5 cut(s)	185, 212, 245, 278, 393
MboII	GAAGA	3 cut(s)	218, 331, 478
MflI	RGATCY	1 cut(s)	393
MluCI	AATT	1 cut(s)	372
MlyI	GAGTC	1 cut(s)	492
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	7 cut(s)	7, 26, 141, 407, 543, 563, 597
MseI	TTAA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	138, 543
MvaI	CCWGG	2 cut(s)	138, 543
MwoI	GCNNNNNNNGC	1 cut(s)	465
NdeII	GATC	5 cut(s)	185, 212, 245, 278, 393
NlaIII	CATG	4 cut(s)	31, 298, 318, 499
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	318
PaeI	GCATGC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	298
PflFI	GACNNNGTC	1 cut(s)	138
PkrI	GCNGC	4 cut(s)	52, 55, 118, 422
PleI	GAGTC	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	491
Psp6I	CCWGG	2 cut(s)	136, 541
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	2 cut(s)	136, 541
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	2 cut(s)	128, 539
PsrI	GAACNNNNNNTAC	2 cut(s)	28, 60
PstI	CTGCAG	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	393
PsyI	GACNNNGTC	1 cut(s)	138
PvuII	CAGCTG	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	4 cut(s)	51, 54, 117, 421
Sau3AI	GATC	5 cut(s)	185, 212, 245, 278, 393
Sau96I	GGNCC	2 cut(s)	128, 539
SchI	GAGTC	1 cut(s)	492
ScrFI	CCNGG	2 cut(s)	138, 543
SetI	ASST	8 cut(s)	58, 133, 139, 150, 418, 461, 578, 610
SexAI	ACCWGGT	1 cut(s)	136
SfaNI	GCATC	1 cut(s)	432
SfcI	CTRYAG	2 cut(s)	48, 603
SinI	GGWCC	1 cut(s)	128
SpeI	ACTAGT	1 cut(s)	82
SphI	GCATGC	1 cut(s)	318
Sse9I	AATT	1 cut(s)	372
SsiI	CCGC	3 cut(s)	117, 462, 466
SspMI	CTAG	3 cut(s)	83, 480, 515
StyD4I	CCNGG	2 cut(s)	136, 541
StyI	CCWWGG	2 cut(s)	96, 343
TaaI	ACNGT	2 cut(s)	388, 446
TaqI	TCGA	2 cut(s)	133, 301
TasI	AATT	1 cut(s)	372
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	3 cut(s)	50, 53, 420
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	3 cut(s)	207, 219, 311
TspRI	CASTG	1 cut(s)	118
Tth111I	GACNNNGTC	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	372
XceI	RCATGY	1 cut(s)	318
XspI	CTAG	3 cut(s)	83, 480, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.