Rmu_sc0000283.1_g000003

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000283.1
OG0007087
Physical Location & Seq
Forward (+)
12386 .. 14407
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1356 bp
atgcagaaactagtgcggatgactctttcttgttccccgcgtcttctcaaaccccataatcacctcaagattctcaaaagcagtagcttgggtggtgttgtatgcaaggtgttcgacgaaatgcctgcttgtgcggacccaattggtattgcaaggcttccattggagggtcacagatgggtgcattcggccccggagcacaaagctgcggcgccattggagcgttctggagaaggtaaagtcgatgatggtggcggtggtaatgctaaagtgaagaggaaaaagctcaaggggaaacgagctgtggttaggtggctcaagttcttcaggtacaagaagaagaaagatttcgagagaatgaccgcggaagaaaagattctacacaaattgagaaagcaggctcaaaggaaagaggagaggctactggaagctcttaagaagatcgagccgtcggagtcggcagaaaccgcccatgatccggagatattgacacccgaggagcacttcttctttttgaagatggggctcaagtgcaagaattatgtgcccgtcggaaggcgggggatataccagggtgtgattctgaacatgcatttgcattggaagaaacatcaaacgctgcaggtgatagtgaagacattctcacctgaggaggttaaggatattgcttctgagctggcgaggttgacaggagggattgtgctcggaattcatgaggagtacacgattattatgtatagagggaagaactattcgcagccgccaacagagattatgtcacctaggatcactctctcgaggaagaaggctttggataaatcaaagtatatggatggccttcgagcagtaaggaagcacattccgaagctggaacaggaccttgagttgcttagagcacaggctaaaagaaaagttgaatttggttctgatgcttttgaagaaactccagaagatattgagagtgtagagtctgagagctcctcaaacttaaagctggagccttcagataagctcaaagaaattttggatagaagaaaggagagccctgaggatgaccttgtaacagatggagatatggcttcggactcggaagatttatcagatatttttgagaccgactctgacaaggagactgagaacaaaccgcaacgacctctgtatttggaagaatttgagaagttcccagttgaaagcgatggagagcctgatgattttgaggatcatctgcgtcaaatatccatggactcaaagaaggctaaatcactgaacgaagaagatgctggcttgccaaactttgatgaggttgataggatatttctgcgtgctgcttcactgttgaagaaaaaaagaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

451

Amino Acids

51.72

Weight (kDa)

8.54

Isoelectric Point (pI)

60.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 163 - 247 7.9e-15 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 613
Acc36I ACCTGC 1 cut(s) 613
AccB1I GGYRCC 1 cut(s) 211
AccII CGCG 2 cut(s) 40, 365
AccIII TCCGGA 1 cut(s) 478
AclWI GGATC 3 cut(s) 470, 794, 1227
AcsI RAATTY 4 cut(s) 708, 917, 1020, 1169
AcuI CTGAAG 2 cut(s) 310, 987
AcyI GRCGYC 1 cut(s) 212
AfaI GTAC 2 cut(s) 332, 722
AfiI CCNNNNNNNGG 3 cut(s) 167, 478, 555
AflII CTTAAG 1 cut(s) 434
AgsI TTSAA 5 cut(s) 517, 917, 938, 1190, 1339
AhlI ACTAGT 1 cut(s) 10
AjnI CCWGG 1 cut(s) 570
AjuI GAANNNNNNNTTGG 2 cut(s) 794, 826
Alw21I GWGCWC 5 cut(s) 201, 504, 705, 898, 980
Alw26I GTCTC 2 cut(s) 1106, 1124
AlwI GGATC 3 cut(s) 470, 794, 1227
Ama87I CYCGRG 2 cut(s) 494, 796
Aor13HI TCCGGA 1 cut(s) 478
AoxI GGCC 2 cut(s) 189, 835
ApeKI GCWGC 4 cut(s) 206, 619, 757, 1325
ApoI RAATTY 4 cut(s) 708, 917, 1020, 1169
Asp700I GAANNNNTTC 3 cut(s) 347, 375, 638
AspA2I CCTAGG 1 cut(s) 782
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 136, 190, 877
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 4 cut(s) 53, 636, 637, 771
AvaI CYCGRG 2 cut(s) 494, 796
AvaII GGWCC 2 cut(s) 136, 877
AvrII CCTAGG 1 cut(s) 782
AxyI CCTNAGG 2 cut(s) 648, 1047
BaeGI GKGCMC 1 cut(s) 549
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 3 cut(s) 528, 980, 1046
BbsI GAAGAC 2 cut(s) 35, 641
Bbv12I GWGCWC 5 cut(s) 201, 504, 705, 898, 980
BbvI GCAGC 4 cut(s) 193, 606, 769, 1312
BccI CCATC 6 cut(s) 171, 242, 514, 827, 1061, 1190
BceAI ACGGC 1 cut(s) 433
BcgI CGANNNNNNTGC 6 cut(s) 94, 107, 128, 141, 1259, 1293
BciT130I CCWGG 1 cut(s) 572
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 1106, 1124
BcuI ACTAGT 1 cut(s) 10
BfaI CTAG 2 cut(s) 11, 783
BfmI CTRYAG 1 cut(s) 620
BfoI RGCGCY 1 cut(s) 215
BfrI CTTAAG 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 613
BisI GCNGC 6 cut(s) 207, 210, 620, 758, 761, 1326
BlnI CCTAGG 1 cut(s) 782
BlsI GCNGC 6 cut(s) 208, 211, 621, 759, 762, 1327
Bme1390I CCNGG 2 cut(s) 194, 572
Bme18I GGWCC 2 cut(s) 136, 877
BmeT110I CYCGRG 2 cut(s) 494, 796
BmgT120I GGNCC 3 cut(s) 136, 190, 877
BmiI GGNNCC 4 cut(s) 138, 192, 213, 999
BmrFI CCNGG 2 cut(s) 194, 572
BmrI ACTGGG 1 cut(s) 1178
BmsI GCATC 2 cut(s) 919, 1267
BmuI ACTGGG 1 cut(s) 1178
BpiI GAAGAC 2 cut(s) 35, 641
BplI GAGNNNNNCTC 4 cut(s) 965, 997, 1103, 1135
BpmI CTGGAG 3 cut(s) 249, 930, 1016
BpuEI CTTGAG 5 cut(s) 50, 272, 302, 512, 902
BpuMI CCSGG 1 cut(s) 194
BsaHI GRCGYC 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 1106
BsaJI CCNNGG 6 cut(s) 192, 363, 495, 571, 782, 1239
BsaWI WCCGGW 1 cut(s) 478
BsaXI ACNNNNNCTCC 2 cut(s) 684, 714
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 478, 555
Bse1I ACTGG 2 cut(s) 429, 1184
Bse21I CCTNAGG 2 cut(s) 648, 1047
BseAI TCCGGA 1 cut(s) 478
BseBI CCWGG 1 cut(s) 572
BseDI CCNNGG 6 cut(s) 192, 363, 495, 571, 782, 1239
BseGI GGATG 3 cut(s) 24, 838, 1057
BseLI CCNNNNNNNGG 3 cut(s) 167, 478, 555
BseMII CTCAG 5 cut(s) 639, 663, 963, 1038, 1125
BseNI ACTGG 2 cut(s) 429, 1184
BseRI GAGGAG 5 cut(s) 428, 512, 665, 731, 970
BseSI GKGCMC 1 cut(s) 549
BseXI GCAGC 4 cut(s) 193, 606, 769, 1312
Bsh1236I CGCG 2 cut(s) 40, 365
BshFI GGCC 2 cut(s) 191, 837
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 5 cut(s) 201, 504, 705, 898, 980
BsiHKCI CYCGRG 2 cut(s) 494, 796
BsiSI CCGG 2 cut(s) 194, 479
BslI CCNNNNNNNGG 3 cut(s) 167, 478, 555
BsmAI GTCTC 2 cut(s) 1106, 1124
BsmI GAATGC 1 cut(s) 184
BsnI GGCC 2 cut(s) 191, 837
Bso31I GGTCTC 1 cut(s) 1106
BsoBI CYCGRG 2 cut(s) 494, 796
Bsp1286I GDGCHC 8 cut(s) 201, 504, 528, 549, 705, 898, 980, 1046
Bsp13I TCCGGA 1 cut(s) 478
Bsp143I GATC 4 cut(s) 441, 475, 786, 1219
Bsp19I CCATGG 1 cut(s) 1239
BspANI GGCC 2 cut(s) 191, 837
BspCNI CTCAG 5 cut(s) 640, 664, 964, 1039, 1126
BspEI TCCGGA 1 cut(s) 478
BspFNI CGCG 2 cut(s) 40, 365
BspHI TCATGA 1 cut(s) 712
BspLI GGNNCC 4 cut(s) 138, 192, 213, 999
BspMAI CTGCAG 1 cut(s) 624
BspMI ACCTGC 1 cut(s) 613
BspPI GGATC 3 cut(s) 470, 794, 1227
BspT107I GGYRCC 1 cut(s) 211
BspTI CTTAAG 1 cut(s) 434
BspTNI GGTCTC 1 cut(s) 1106
BsrI ACTGG 2 cut(s) 429, 1184
BssECI CCNNGG 6 cut(s) 192, 363, 495, 571, 782, 1239
BssMI GATC 4 cut(s) 441, 475, 786, 1219
BssNI GRCGYC 1 cut(s) 212
BssT1I CCWWGG 2 cut(s) 782, 1239
Bst2UI CCWGG 1 cut(s) 572
Bst4CI ACNGT 1 cut(s) 1335
Bst6I CTCTTC 1 cut(s) 269
BstACI GRCGYC 1 cut(s) 212
BstAFI CTTAAG 1 cut(s) 434
BstC8I GCNNGC 6 cut(s) 126, 399, 678, 1282, 1286, 1323
BstDEI CTNAG 6 cut(s) 648, 672, 890, 972, 1047, 1134
BstDSI CCRYGG 2 cut(s) 363, 1239
BstF5I GGATG 3 cut(s) 24, 838, 1057
BstFNI CGCG 2 cut(s) 40, 365
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 4 cut(s) 444, 478, 789, 1222
BstMAI GTCTC 2 cut(s) 1106, 1124
BstMBI GATC 4 cut(s) 441, 475, 786, 1219
BstMWI GCNNNNNNNGC 2 cut(s) 220, 467
BstNI CCWGG 1 cut(s) 572
BstNSI RCATGY 1 cut(s) 592
BstSCI CCNGG 2 cut(s) 192, 570
BstSFI CTRYAG 1 cut(s) 620
BstSLI GKGCMC 1 cut(s) 549
BstUI CGCG 2 cut(s) 40, 365
BstV1I GCAGC 4 cut(s) 193, 606, 769, 1312
BstV2I GAAGAC 2 cut(s) 35, 641
Bsu36I CCTNAGG 2 cut(s) 648, 1047
BsuRI GGCC 2 cut(s) 191, 837
BtgI CCRYGG 2 cut(s) 363, 1239
BtgZI GCGATG 1 cut(s) 1209
BtsCI GGATG 3 cut(s) 24, 838, 1057
BtsIMutI CAGTG 2 cut(s) 1262, 1331
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 6 cut(s) 126, 399, 678, 1282, 1286, 1323
CciI TCATGA 1 cut(s) 712
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 3 cut(s) 136, 190, 877
Cfr42I CCGCGG 1 cut(s) 366
CseI GACGC 2 cut(s) 29, 1217
Csp6I GTAC 2 cut(s) 331, 721
CviAII CATG 4 cut(s) 473, 589, 713, 1240
CviQI GTAC 2 cut(s) 331, 721
DdeI CTNAG 6 cut(s) 648, 672, 890, 972, 1047, 1134
DinI GGCGCC 1 cut(s) 213
DpnI GATC 4 cut(s) 443, 477, 788, 1221
DpnII GATC 4 cut(s) 441, 475, 786, 1219
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Ecl136II GAGCTC 1 cut(s) 978
Eco130I CCWWGG 2 cut(s) 782, 1239
Eco24I GRGCYC 3 cut(s) 528, 980, 1046
Eco31I GGTCTC 1 cut(s) 1106
Eco47I GGWCC 2 cut(s) 136, 877
Eco53kI GAGCTC 1 cut(s) 978
Eco57I CTGAAG 2 cut(s) 310, 987
Eco81I CCTNAGG 2 cut(s) 648, 1047
Eco88I CYCGRG 2 cut(s) 494, 796
EcoICRI GAGCTC 1 cut(s) 978
EcoO109I RGGNCCY 1 cut(s) 877
EcoRI GAATTC 1 cut(s) 708
EcoRII CCWGG 1 cut(s) 570
EcoT14I CCWWGG 2 cut(s) 782, 1239
EcoT22I ATGCAT 1 cut(s) 594
EcoT38I GRGCYC 3 cut(s) 528, 980, 1046
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
ErhI CCWWGG 2 cut(s) 782, 1239
FaeI CATG 4 cut(s) 476, 592, 716, 1243
FatI CATG 4 cut(s) 472, 588, 712, 1239
FauI CCCGC 2 cut(s) 45, 552
Fnu4HI GCNGC 6 cut(s) 207, 210, 620, 758, 761, 1326
FokI GGATG 3 cut(s) 31, 845, 1064
FriOI GRGCYC 3 cut(s) 528, 980, 1046
Fsp4HI GCNGC 6 cut(s) 207, 210, 620, 758, 761, 1326
FspBI CTAG 2 cut(s) 11, 783
GlaI GCGC 1 cut(s) 213
GluI GCNGC 6 cut(s) 207, 210, 620, 758, 761, 1326
GsuI CTGGAG 3 cut(s) 249, 930, 1016
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 2 cut(s) 191, 837
HapII CCGG 2 cut(s) 194, 479
HgaI GACGC 2 cut(s) 29, 1217
HhaI GCGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 4 cut(s) 476, 592, 716, 1243
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 687
HindII GTYRAC 1 cut(s) 687
HinfI GANTC 9 cut(s) 22, 70, 376, 455, 580, 968, 1085, 1118, 1244
HpaII CCGG 2 cut(s) 194, 479
HphI GGTGA 4 cut(s) 53, 636, 637, 771
Hpy166II GTNNAC 2 cut(s) 687, 723
Hpy188III TCNNGA 7 cut(s) 67, 228, 352, 479, 713, 796, 947
Hpy8I GTNNAC 2 cut(s) 687, 723
Hpy99I CGWCG 3 cut(s) 119, 454, 554
HpyAV CCTTC 6 cut(s) 227, 549, 799, 848, 1011, 1246
HpyCH4III ACNGT 1 cut(s) 1335
HpyCH4V TGCA 8 cut(s) 4, 105, 152, 184, 534, 592, 598, 622
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 467
HpyF3I CTNAG 6 cut(s) 648, 672, 890, 972, 1047, 1134
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 4 cut(s) 476, 592, 716, 1243
HspAI GCGC 1 cut(s) 212
KasI GGCGCC 1 cut(s) 211
Kpn2I TCCGGA 1 cut(s) 478
KspI CCGCGG 1 cut(s) 366
Kzo9I GATC 4 cut(s) 441, 475, 786, 1219
LmnI GCTCC 5 cut(s) 196, 220, 499, 983, 997
Lsp1109I GCAGC 4 cut(s) 193, 606, 769, 1312
LweI GCATC 2 cut(s) 919, 1267
MaeI CTAG 2 cut(s) 11, 783
MaeIII GTNAC 3 cut(s) 170, 777, 1060
MalI GATC 4 cut(s) 443, 477, 788, 1221
MboI GATC 4 cut(s) 441, 475, 786, 1219
MfeI CAATTG 1 cut(s) 141
MhlI GDGCHC 8 cut(s) 201, 504, 528, 549, 705, 898, 980, 1046
MluCI AATT 7 cut(s) 141, 386, 538, 708, 917, 1020, 1169
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 6 cut(s) 16, 464, 977, 1079, 1112, 1238
MmeI TCCRAC 2 cut(s) 432, 532
Mph1103I ATGCAT 1 cut(s) 594
MroI TCCGGA 1 cut(s) 478
MroXI GAANNNNTTC 3 cut(s) 347, 375, 638
MseI TTAA 3 cut(s) 435, 657, 989
MspA1I CMGCKG 1 cut(s) 365
MspCI CTTAAG 1 cut(s) 434
MspI CCGG 2 cut(s) 194, 479
MspR9I CCNGG 2 cut(s) 194, 572
MunI CAATTG 1 cut(s) 141
Mva1269I GAATGC 1 cut(s) 184
MvaI CCWGG 1 cut(s) 572
MvnI CGCG 2 cut(s) 40, 365
MwoI GCNNNNNNNGC 2 cut(s) 220, 467
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 1 cut(s) 194
NcoI CCATGG 1 cut(s) 1239
NdeII GATC 4 cut(s) 441, 475, 786, 1219
NlaIII CATG 4 cut(s) 476, 592, 716, 1243
NlaIV GGNNCC 4 cut(s) 138, 192, 213, 999
NmuCI GTSAC 2 cut(s) 170, 777
NsiI ATGCAT 1 cut(s) 594
NspI RCATGY 1 cut(s) 592
PaeR7I CTCGAG 1 cut(s) 796
PagI TCATGA 1 cut(s) 712
PaqCI CACCTGC 1 cut(s) 613
PctI GAATGC 1 cut(s) 184
PdmI GAANNNNTTC 3 cut(s) 347, 375, 638
PfeI GAWTC 3 cut(s) 70, 376, 580
PkrI GCNGC 6 cut(s) 208, 211, 621, 759, 762, 1327
PleI GAGTC 6 cut(s) 16, 463, 976, 1079, 1112, 1238
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 6 cut(s) 16, 463, 976, 1079, 1112, 1238
PpuMI RGGWCCY 1 cut(s) 877
Psp124BI GAGCTC 1 cut(s) 980
Psp5II RGGWCCY 1 cut(s) 877
Psp6I CCWGG 1 cut(s) 570
PspGI CCWGG 1 cut(s) 570
PspN4I GGNNCC 4 cut(s) 138, 192, 213, 999
PspPI GGNCC 3 cut(s) 136, 190, 877
PspPPI RGGWCCY 1 cut(s) 877
PstI CTGCAG 1 cut(s) 624
RsaI GTAC 2 cut(s) 332, 722
RsaNI GTAC 2 cut(s) 331, 721
SacI GAGCTC 1 cut(s) 980
SacII CCGCGG 1 cut(s) 366
SaqAI TTAA 3 cut(s) 435, 657, 989
SatI GCNGC 6 cut(s) 207, 210, 620, 758, 761, 1326
Sau3AI GATC 4 cut(s) 441, 475, 786, 1219
Sau96I GGNCC 3 cut(s) 136, 190, 877
SchI GAGTC 6 cut(s) 16, 464, 977, 1079, 1112, 1238
ScrFI CCNGG 2 cut(s) 194, 572
SduI GDGCHC 8 cut(s) 201, 504, 528, 549, 705, 898, 980, 1046
SfaNI GCATC 2 cut(s) 919, 1267
SfcI CTRYAG 1 cut(s) 620
SfoI GGCGCC 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 796
Sfr303I CCGCGG 1 cut(s) 366
SgrBI CCGCGG 1 cut(s) 366
SinI GGWCC 2 cut(s) 136, 877
SlaI CTCGAG 1 cut(s) 796
SmlI CTYRAG 7 cut(s) 65, 287, 317, 434, 527, 796, 881
SmoI CTYRAG 7 cut(s) 65, 287, 317, 434, 527, 796, 881
SpeI ACTAGT 1 cut(s) 10
Sse9I AATT 7 cut(s) 141, 386, 538, 708, 917, 1020, 1169
SspDI GGCGCC 1 cut(s) 211
SspMI CTAG 2 cut(s) 11, 783
SstI GAGCTC 1 cut(s) 980
StyD4I CCNGG 2 cut(s) 192, 570
StyI CCWWGG 2 cut(s) 782, 1239
TaaI ACNGT 1 cut(s) 1335
TaqI TCGA 6 cut(s) 114, 243, 351, 444, 797, 841
TaqII GACCGA 1 cut(s) 1130
TasI AATT 7 cut(s) 141, 386, 538, 708, 917, 1020, 1169
TatI WGTACW 1 cut(s) 720
TauI GCSGC 2 cut(s) 212, 763
TfiI GAWTC 3 cut(s) 70, 376, 580
Tru1I TTAA 3 cut(s) 435, 657, 989
Tru9I TTAA 3 cut(s) 435, 657, 989
TscAI CASTG 2 cut(s) 1269, 1338
TseFI GTSAC 2 cut(s) 170, 777
TseI GCWGC 4 cut(s) 206, 619, 757, 1325
Tsp45I GTSAC 2 cut(s) 170, 777
TspDTI ATGAA 1 cut(s) 701
TspRI CASTG 2 cut(s) 1269, 1338
Vha464I CTTAAG 1 cut(s) 434
VpaK11BI GGWCC 2 cut(s) 136, 877
XapI RAATTY 4 cut(s) 708, 917, 1020, 1169
XceI RCATGY 1 cut(s) 592
XhoI CTCGAG 1 cut(s) 796
XmaJI CCTAGG 1 cut(s) 782
XmnI GAANNNNTTC 3 cut(s) 347, 375, 638
XspI CTAG 2 cut(s) 11, 783
Zsp2I ATGCAT 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.