Rmu_sc0000312.1_g000003

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000312.1
OG0008685
Physical Location & Seq
Forward (+)
10298 .. 12629
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 774 bp
atgcccaatacatcagaaggtataacagaaaacctaaaacacaaaacgcgcctcttcctcttcctcttccaaaaatcccagctctctgtactctcttttcttcagagcaagatgggggcgaaggcgaaaaaggccatgaaaaagcagctgagcaaagctgtttctgcttctgcttctgctcaaaaaccagttgctagttccgctactgctgctcctgattttttgccattagaaggcggtcctgcgcgtaagctcccggaagagaagcctaaggaagatgttgccagggttgtattcatcagtcggataccgcacggcttctatgaaaaagaaatgcaaggtttctttgggcagtttggtgtaatcaagagattaagaattgtacgcaacagaaagacaggaaagtccaagcattttggcttcatcgagtttgaggaccctggggttgcgaaaattgtagctgaaactatggataattatttgttgttcgaacaccttttgcaaacccgtcttattccaccagagaaagttcacccgaagttgtggaaaggttgcaacgttcgagccaaacccttgaactgggttcaaattgagcgcaagaggcatgataaggaaagaacattggaagagcacaaaaagctggtggagaaaattaagaagagagatctgaagcgtcaaatgagaatagaggctgctggcattgagtacgagtgcccagacattgtcactaatgatcagcctgctccaaagaagaagaagttgcgcctaaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

257

Amino Acids

29.49

Weight (kDa)

10.08

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 98 - 165 6.7e-13 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 403
AccII CGCG 2 cut(s) 49, 247
AciI CCGC 3 cut(s) 201, 237, 311
AclI AACGTT 1 cut(s) 558
AcuI CTGAAG 2 cut(s) 86, 689
AfaI GTAC 3 cut(s) 90, 384, 707
AfiI CCNNNNNNNGG 2 cut(s) 233, 579
AgsI TTSAA 2 cut(s) 577, 587
AjnI CCWGG 2 cut(s) 284, 439
AluBI AGCT 6 cut(s) 82, 148, 158, 253, 461, 640
AluI AGCT 6 cut(s) 82, 148, 158, 253, 461, 640
Alw21I GWGCWC 1 cut(s) 633
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 3 cut(s) 145, 209, 692
AspLEI GCGC 4 cut(s) 51, 247, 597, 765
AspS9I GGNCC 2 cut(s) 239, 436
AsuC2I CCSGG 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 524
AsuII TTCGAA 1 cut(s) 489
AvaII GGWCC 2 cut(s) 239, 436
AxyI CCTNAGG 1 cut(s) 270
BaeGI GKGCMC 1 cut(s) 716
Bbv12I GWGCWC 1 cut(s) 633
BbvI GCAGC 3 cut(s) 157, 196, 679
BccI CCATC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 331
BciT130I CCWGG 2 cut(s) 286, 441
BciVI GTATCC 1 cut(s) 300
BclI TGATCA 1 cut(s) 733
BcnI CCSGG 1 cut(s) 257
BfaI CTAG 1 cut(s) 195
BfuI GTATCC 1 cut(s) 300
BglII AGATCT 1 cut(s) 664
BisI GCNGC 3 cut(s) 146, 210, 693
BlpI GCTNAGC 1 cut(s) 149
BlsI GCNGC 3 cut(s) 147, 211, 694
Bme1390I CCNGG 3 cut(s) 257, 286, 441
Bme18I GGWCC 2 cut(s) 239, 436
BmgT120I GGNCC 2 cut(s) 239, 436
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 3 cut(s) 257, 286, 441
BmrI ACTGGG 1 cut(s) 589
BmuI ACTGGG 1 cut(s) 589
Bpu1102I GCTNAGC 1 cut(s) 149
Bpu14I TTCGAA 1 cut(s) 489
BpuMI CCSGG 1 cut(s) 257
BsaJI CCNNGG 3 cut(s) 285, 439, 440
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 579
Bse1I ACTGG 2 cut(s) 188, 584
Bse21I CCTNAGG 1 cut(s) 270
BseBI CCWGG 2 cut(s) 286, 441
BseDI CCNNGG 3 cut(s) 285, 439, 440
BseLI CCNNNNNNNGG 2 cut(s) 233, 579
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 2 cut(s) 188, 584
BseSI GKGCMC 1 cut(s) 716
BseXI GCAGC 3 cut(s) 157, 196, 679
BseYI CCCAGC 1 cut(s) 78
Bsh1236I CGCG 2 cut(s) 49, 247
BshFI GGCC 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 633
BsiSI CCGG 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 233, 579
BsnI GGCC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 489
Bsp1286I GDGCHC 2 cut(s) 633, 716
Bsp143I GATC 2 cut(s) 664, 733
Bsp1720I GCTNAGC 1 cut(s) 149
BspACI CCGC 3 cut(s) 201, 237, 311
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 141
BspFNI CGCG 2 cut(s) 49, 247
BspLI GGNNCC 1 cut(s) 438
BspQI GCTCTTC 1 cut(s) 621
BspT104I TTCGAA 1 cut(s) 489
BsrI ACTGG 2 cut(s) 188, 584
BssECI CCNNGG 3 cut(s) 285, 439, 440
BssMI GATC 2 cut(s) 664, 733
Bst2UI CCWGG 2 cut(s) 286, 441
Bst6I CTCTTC 6 cut(s) 59, 65, 71, 255, 621, 653
BstBI TTCGAA 1 cut(s) 489
BstC8I GCNNGC 2 cut(s) 697, 741
BstDEI CTNAG 2 cut(s) 149, 270
BstFNI CGCG 2 cut(s) 49, 247
BstHHI GCGC 4 cut(s) 51, 247, 597, 765
BstKTI GATC 2 cut(s) 667, 736
BstMBI GATC 2 cut(s) 664, 733
BstMWI GCNNNNNNNGC 6 cut(s) 131, 164, 200, 209, 601, 637
BstNI CCWGG 2 cut(s) 286, 441
BstSCI CCNGG 3 cut(s) 255, 284, 439
BstSLI GKGCMC 1 cut(s) 716
BstUI CGCG 2 cut(s) 49, 247
BstV1I GCAGC 3 cut(s) 157, 196, 679
BstX2I RGATCY 1 cut(s) 664
BstYI RGATCY 1 cut(s) 664
Bsu36I CCTNAGG 1 cut(s) 270
BsuI GTATCC 1 cut(s) 300
BsuRI GGCC 1 cut(s) 134
Cac8I GCNNGC 2 cut(s) 697, 741
CfoI GCGC 4 cut(s) 51, 247, 597, 765
Cfr13I GGNCC 2 cut(s) 239, 436
CseI GACGC 1 cut(s) 662
Csp6I GTAC 3 cut(s) 89, 383, 706
CviAII CATG 2 cut(s) 136, 605
CviQI GTAC 3 cut(s) 89, 383, 706
DdeI CTNAG 2 cut(s) 149, 270
DpnI GATC 2 cut(s) 666, 735
DpnII GATC 2 cut(s) 664, 733
DrdI GACNNNNNNGTC 1 cut(s) 403
DseDI GACNNNNNNGTC 1 cut(s) 403
Eam1104I CTCTTC 6 cut(s) 59, 65, 71, 255, 621, 653
EarI CTCTTC 6 cut(s) 59, 65, 71, 255, 621, 653
Eco47I GGWCC 2 cut(s) 239, 436
Eco57I CTGAAG 2 cut(s) 86, 689
Eco81I CCTNAGG 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 436
EcoRII CCWGG 2 cut(s) 284, 439
FaeI CATG 2 cut(s) 139, 608
FaiI YATR 5 cut(s) 23, 137, 324, 470, 606
FatI CATG 2 cut(s) 135, 604
FbaI TGATCA 1 cut(s) 733
Fnu4HI GCNGC 3 cut(s) 146, 210, 693
Fsp4HI GCNGC 3 cut(s) 146, 210, 693
FspBI CTAG 1 cut(s) 195
GlaI GCGC 4 cut(s) 50, 246, 596, 764
GluI GCNGC 3 cut(s) 146, 210, 693
GsaI CCCAGC 1 cut(s) 82
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 257
HgaI GACGC 1 cut(s) 662
HhaI GCGC 4 cut(s) 51, 247, 597, 765
Hin1II CATG 2 cut(s) 139, 608
Hin6I GCGC 4 cut(s) 49, 245, 595, 763
HinP1I GCGC 4 cut(s) 49, 245, 595, 763
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 524
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 4 cut(s) 16, 105, 306, 669
Hpy188III TCNNGA 2 cut(s) 215, 367
Hpy8I GTNNAC 1 cut(s) 532
HpyAV CCTTC 3 cut(s) 11, 115, 227
HpyCH4IV ACGT 1 cut(s) 558
HpyCH4V TGCA 3 cut(s) 337, 502, 555
HpyF10VI GCNNNNNNNGC 6 cut(s) 131, 164, 200, 209, 601, 637
HpyF3I CTNAG 2 cut(s) 149, 270
HpySE526I ACGT 1 cut(s) 558
Hsp92II CATG 2 cut(s) 139, 608
HspAI GCGC 4 cut(s) 49, 245, 595, 763
Ksp22I TGATCA 1 cut(s) 733
Kzo9I GATC 2 cut(s) 664, 733
LguI GCTCTTC 1 cut(s) 621
LmnI GCTCC 3 cut(s) 217, 258, 748
Lsp1109I GCAGC 3 cut(s) 157, 196, 679
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 558
MaeIII GTNAC 1 cut(s) 724
MalI GATC 2 cut(s) 666, 735
MboI GATC 2 cut(s) 664, 733
MflI RGATCY 1 cut(s) 664
MhlI GDGCHC 2 cut(s) 633, 716
MluCI AATT 5 cut(s) 378, 453, 475, 588, 651
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 6 cut(s) 62, 68, 74, 427, 594, 682
MseI TTAA 2 cut(s) 374, 654
MspA1I CMGCKG 1 cut(s) 148
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 3 cut(s) 257, 286, 441
MvaI CCWGG 2 cut(s) 286, 441
MvnI CGCG 2 cut(s) 49, 247
MwoI GCNNNNNNNGC 6 cut(s) 131, 164, 200, 209, 601, 637
NciI CCSGG 1 cut(s) 257
NdeII GATC 2 cut(s) 664, 733
NlaIII CATG 2 cut(s) 139, 608
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 724
NspV TTCGAA 1 cut(s) 489
PasI CCCWGGG 1 cut(s) 440
PciSI GCTCTTC 1 cut(s) 621
PflFI GACNNNGTC 1 cut(s) 722
PfoI TCCNGGA 1 cut(s) 255
PkrI GCNGC 3 cut(s) 147, 211, 694
PpuMI RGGWCCY 1 cut(s) 436
Psp1406I AACGTT 1 cut(s) 558
Psp5II RGGWCCY 1 cut(s) 436
Psp6I CCWGG 2 cut(s) 284, 439
PspFI CCCAGC 1 cut(s) 78
PspGI CCWGG 2 cut(s) 284, 439
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 2 cut(s) 239, 436
PspPPI RGGWCCY 1 cut(s) 436
PsuI RGATCY 1 cut(s) 664
PsyI GACNNNGTC 1 cut(s) 722
PvuII CAGCTG 1 cut(s) 148
RsaI GTAC 3 cut(s) 90, 384, 707
RsaNI GTAC 3 cut(s) 89, 383, 706
SapI GCTCTTC 1 cut(s) 621
SaqAI TTAA 2 cut(s) 374, 654
SatI GCNGC 3 cut(s) 146, 210, 693
Sau3AI GATC 2 cut(s) 664, 733
Sau96I GGNCC 2 cut(s) 239, 436
ScrFI CCNGG 3 cut(s) 257, 286, 441
SduI GDGCHC 2 cut(s) 633, 716
SfuI TTCGAA 1 cut(s) 489
SinI GGWCC 2 cut(s) 239, 436
Sse9I AATT 5 cut(s) 378, 453, 475, 588, 651
SsiI CCGC 3 cut(s) 201, 237, 311
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 3 cut(s) 255, 284, 439
TaiI ACGT 1 cut(s) 561
TaqI TCGA 3 cut(s) 426, 489, 562
TasI AATT 5 cut(s) 378, 453, 475, 588, 651
TatI WGTACW 1 cut(s) 88
Tru1I TTAA 2 cut(s) 374, 654
Tru9I TTAA 2 cut(s) 374, 654
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 3 cut(s) 145, 209, 692
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 4 cut(s) 152, 286, 339, 412
Tth111I GACNNNGTC 1 cut(s) 722
VpaK11BI GGWCC 2 cut(s) 239, 436
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.