Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000331.1

Orthogroup ID

OG0013603

Physical Location & Seq

Genomic Coordinates Forward (+)

91503 .. 92033

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgttccaagacttgagcgaattcatgagtttagaaaaagctgagattgagctagaccccgtggtgattgactttaacaatgtattcaagctgcttcatggtattcgaagtgctaaagtcgttctggatttatctgaaactaccatgaagtgtctgcacgagggagttttaacgccagaacgactgcaactacataatgtttgttgtttaagaattcgtggtttgagcttaatggacgatgatgtccccgctatggtctcccttttgaaaggaacgccaaacttggctactttgcacatagaggctggtcggactggaagcagatatagatcatcatcttatggcaatatgtcagtctgggagttgcaaaagcttgctttacataacctaaaggaggtgacaataaagctttccagtggaggtaatggaatcagctttacacagtatatcatccatcacgctctacagttgcagaaaatggttatctattatttacctgagcaatcttataaagtcaggaggtacaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

176

Amino Acids

20.02

Weight (kDa)

7.77

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04250
rosa_laevigata	RLG00000014989 RLG00000014994
rosa_multiflora	Rmu_sc0000331.1_g000017 Rmu_sc0001351.1_g000005 Rmu_sc0001351.1_g000011 Rmu_sc0006378.1_g000001 Rmu_sc0006378.1_g000002
rosa_roxburghii	Rroxscaffold_7G00211680
rosa_rugosa	Rorug05G0545400 Rorug05G0545400 Rorug05G0546100
rosa_samantha	Rh6AG061600 Rh6AG061700 Rh6BG055200 Rh6CG054700 Rh6DG052200 Rh6DG052700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
AasI	GACNNNNNNGTC	1 cut(s)	242
AciI	CCGC	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	20, 213
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	2 cut(s)	253, 394
AgsI	TTSAA	2 cut(s)	88, 268
AluBI	AGCT	7 cut(s)	41, 52, 91, 228, 373, 409, 435
AluI	AGCT	7 cut(s)	41, 52, 91, 228, 373, 409, 435
Alw26I	GTCTC	1 cut(s)	262
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	2 cut(s)	20, 213
AsuHPI	GGTGA	2 cut(s)	76, 409
AsuII	TTCGAA	1 cut(s)	106
BauI	CACGAG	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	464
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	498
Bpu14I	TTCGAA	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	34
BsaBI	GATNNNNATC	2 cut(s)	328, 334
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 394
Bse1I	ACTGG	2 cut(s)	319, 414
Bse8I	GATNNNNATC	2 cut(s)	328, 334
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	450
BseJI	GATNNNNATC	2 cut(s)	328, 334
BseLI	CCNNNNNNNGG	2 cut(s)	253, 394
BseMII	CTCAG	2 cut(s)	33, 489
BseNI	ACTGG	2 cut(s)	319, 414
BseXI	GCAGC	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	253, 394
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	262
Bsp119I	TTCGAA	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	329
BspACI	CCGC	1 cut(s)	249
BspCNI	CTCAG	2 cut(s)	34, 490
BspHI	TCATGA	1 cut(s)	24
BspT104I	TTCGAA	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	319, 414
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	329
BssSI	CACGAG	1 cut(s)	158
Bst2BI	CACGAG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	444, 468
BstBI	TTCGAA	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	2 cut(s)	42, 498
BstDSI	CCRYGG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	450
BstKTI	GATC	1 cut(s)	332
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	329
BstSFI	CTRYAG	1 cut(s)	464
BstV1I	GCAGC	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	421
Cac8I	GCNNGC	1 cut(s)	375
CciI	TCATGA	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	3 cut(s)	25, 98, 145
CviJI	RGCY	9 cut(s)	41, 52, 91, 228, 287, 305, 373, 409, 435
CviKI_1	RGCY	9 cut(s)	41, 52, 91, 228, 287, 305, 373, 409, 435
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	2 cut(s)	42, 498
DpnI	GATC	1 cut(s)	331
DpnII	GATC	1 cut(s)	329
DrdI	GACNNNNNNGTC	1 cut(s)	242
DseDI	GACNNNNNNGTC	1 cut(s)	242
Eco31I	GGTCTC	1 cut(s)	262
EcoNI	CCTNNNNNAGG	1 cut(s)	392
EcoRI	GAATTC	2 cut(s)	20, 213
FaeI	CATG	3 cut(s)	28, 101, 148
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	3 cut(s)	24, 97, 144
FauI	CCCGC	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	28, 101, 148
HindIII	AAGCTT	2 cut(s)	371, 407
HinfI	GANTC	1 cut(s)	429
HphI	GGTGA	2 cut(s)	76, 409
Hpy188I	TCNGA	2 cut(s)	136, 312
Hpy188III	TCNNGA	3 cut(s)	25, 125, 517
HpyCH4III	ACNGT	2 cut(s)	444, 468
HpyCH4V	TGCA	5 cut(s)	157, 187, 295, 367, 472
HpyF3I	CTNAG	2 cut(s)	42, 498
Hsp92II	CATG	3 cut(s)	28, 101, 148
Kzo9I	GATC	1 cut(s)	329
LpnPI	CCDG	8 cut(s)	110, 189, 291, 300, 343, 427, 502, 510
Lsp1109I	GCAGC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	1 cut(s)	331
MboI	GATC	1 cut(s)	329
MluCI	AATT	3 cut(s)	20, 213, 526
MmeI	TCCRAC	1 cut(s)	290
MnlI	CCTC	5 cut(s)	154, 295, 388, 413, 513
MseI	TTAA	5 cut(s)	75, 170, 209, 230, 529
NdeII	GATC	1 cut(s)	329
NlaIII	CATG	3 cut(s)	28, 101, 148
NmuCI	GTSAC	1 cut(s)	397
NspV	TTCGAA	1 cut(s)	106
PagI	TCATGA	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	429
PkrI	GCNGC	1 cut(s)	93
PsiI	TTATAA	1 cut(s)	510
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
SaqAI	TTAA	5 cut(s)	75, 170, 209, 230, 529
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	1 cut(s)	329
SfcI	CTRYAG	1 cut(s)	464
SfuI	TTCGAA	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	3 cut(s)	20, 213, 526
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	444, 468
TaqI	TCGA	1 cut(s)	106
TasI	AATT	3 cut(s)	20, 213, 526
TfiI	GAWTC	1 cut(s)	429
Tru1I	TTAA	5 cut(s)	75, 170, 209, 230, 529
Tru9I	TTAA	5 cut(s)	75, 170, 209, 230, 529
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	3 cut(s)	13, 86, 161
TspRI	CASTG	1 cut(s)	421
XagI	CCTNNNNNAGG	1 cut(s)	392
XapI	RAATTY	2 cut(s)	20, 213
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.