Rmu_sc0000410.1_g000021
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000410.1
OG0015711
Physical Location & Seq
Forward (+)
115090 .. 115746
657 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 657 bp
atgttctatgctcctgtgttgttcaacacaattggtttcggaagtgatgcttctctcatatcggctgtgatcaccggacttgttaatgttgctgcaacaattgtttcgatgtatggtgttgataagtggggaaggaggaagctcttccttgagggtggaactcaaatgttgatatgccagatagttgtggcggcttgtattggtgcaaaatttggattggatggaaatgctgataacttgccaaagtggtatgcaattgttgtggtagttttcatctgcacatatgtagcagggtttgcttggtcatggggtcctctagggtggctagtccctagtgaaatcttccccttggaaatccgatccgctgctcagagtgtcaatgtctcagttaacatgatcttcaccttcattgtggctcaagtcttcttgacaatgttgtgccacttgaaattcgggctcttcatcttcttcgcattcttcgtgtgtgtcatgtccattttcgtgtacttgttcttgcccgagacaaaggggatcccaattgaagagatgagcagggtgtggaagcagcattggtactggaagagatatgttaccgaagaagattaccccaacgatggttatgagatgagcaagccaacaattgtcaacattgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

218

Amino Acids

24.58

Weight (kDa)

6.1

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 1 - 187 4.8e-54 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 191, 363
AclWI GGATC 3 cut(s) 354, 526, 539
AcsI RAATTY 2 cut(s) 209, 449
AfaI GTAC 2 cut(s) 506, 575
AfiI CCNNNNNNNGG 1 cut(s) 614
AgsI TTSAA 3 cut(s) 25, 448, 542
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw26I GTCTC 2 cut(s) 388, 515
AlwI GGATC 3 cut(s) 354, 526, 539
Ama87I CYCGRG 1 cut(s) 518
ApeKI GCWGC 3 cut(s) 92, 365, 565
ApoI RAATTY 2 cut(s) 209, 449
Asp700I GAANNNNTTC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 2 cut(s) 64, 394
AvaI CYCGRG 1 cut(s) 518
AvaII GGWCC 1 cut(s) 311
BamHI GGATCC 1 cut(s) 531
BanII GRGCYC 1 cut(s) 459
BbsI GAAGAC 1 cut(s) 415
BbvI GCAGC 3 cut(s) 79, 352, 577
BccI CCATC 2 cut(s) 215, 608
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 388, 515
BfaI CTAG 3 cut(s) 317, 326, 333
BisI GCNGC 4 cut(s) 93, 192, 366, 566
BlsI GCNGC 4 cut(s) 94, 193, 367, 567
Bme18I GGWCC 1 cut(s) 311
BmeT110I CYCGRG 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 2 cut(s) 312, 533
BmsI GCATC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 415
BpuEI CTTGAG 2 cut(s) 170, 402
BsaJI CCNNGG 1 cut(s) 348
BsaWI WCCGGW 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 614
Bse1I ACTGG 1 cut(s) 581
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 614
BseMII CTCAG 2 cut(s) 383, 399
BseNI ACTGG 1 cut(s) 581
BseXI GCAGC 3 cut(s) 79, 352, 577
BsgI GTGCAG 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 614
BsmAI GTCTC 2 cut(s) 388, 515
BsmFI GGGAC 1 cut(s) 314
BsmI GAATGC 1 cut(s) 473
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 4 cut(s) 69, 359, 396, 531
BspACI CCGC 2 cut(s) 191, 363
BspCNI CTCAG 2 cut(s) 382, 398
BspLI GGNNCC 2 cut(s) 312, 533
BspPI GGATC 3 cut(s) 354, 526, 539
BspQI GCTCTTC 2 cut(s) 149, 464
BsrI ACTGG 1 cut(s) 581
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 4 cut(s) 69, 359, 396, 531
BssT1I CCWWGG 1 cut(s) 348
Bst6I CTCTTC 4 cut(s) 149, 464, 537, 575
BstAPI GCANNNNNTGC 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 632
BstDEI CTNAG 2 cut(s) 369, 385
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 4 cut(s) 72, 362, 399, 534
BstMAI GTCTC 2 cut(s) 388, 515
BstMBI GATC 4 cut(s) 69, 359, 396, 531
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstV1I GCAGC 3 cut(s) 79, 352, 577
BstV2I GAAGAC 1 cut(s) 415
BstX2I RGATCY 1 cut(s) 531
BstYI RGATCY 1 cut(s) 531
BtsCI GGATG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 632
Cfr13I GGNCC 1 cut(s) 311
Csp6I GTAC 2 cut(s) 505, 574
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 3 cut(s) 306, 394, 490
CviJI RGCY 7 cut(s) 65, 142, 194, 325, 416, 457, 634
CviKI_1 RGCY 7 cut(s) 65, 142, 194, 325, 416, 457, 634
CviQI GTAC 2 cut(s) 505, 574
DdeI CTNAG 2 cut(s) 369, 385
DpnI GATC 4 cut(s) 71, 361, 398, 533
DpnII GATC 4 cut(s) 69, 359, 396, 531
Eam1104I CTCTTC 4 cut(s) 149, 464, 537, 575
EarI CTCTTC 4 cut(s) 149, 464, 537, 575
Eco130I CCWWGG 1 cut(s) 348
Eco24I GRGCYC 1 cut(s) 459
Eco47I GGWCC 1 cut(s) 311
Eco88I CYCGRG 1 cut(s) 518
EcoO109I RGGNCCY 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 3 cut(s) 309, 397, 493
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FaqI GGGAC 1 cut(s) 314
FatI CATG 3 cut(s) 305, 393, 489
FauNDI CATATG 1 cut(s) 283
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 4 cut(s) 93, 192, 366, 566
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 459
Fsp4HI GCNGC 4 cut(s) 93, 192, 366, 566
FspBI CTAG 3 cut(s) 317, 326, 333
GluI GCNGC 4 cut(s) 93, 192, 366, 566
HapII CCGG 1 cut(s) 75
Hin1II CATG 3 cut(s) 309, 397, 493
HincII GTYRAC 2 cut(s) 391, 646
HindII GTYRAC 2 cut(s) 391, 646
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 1 cut(s) 75
HphI GGTGA 2 cut(s) 64, 394
Hpy166II GTNNAC 3 cut(s) 391, 505, 646
Hpy188I TCNGA 3 cut(s) 41, 359, 372
Hpy188III TCNNGA 1 cut(s) 427
Hpy8I GTNNAC 3 cut(s) 391, 505, 646
HpyAV CCTTC 2 cut(s) 126, 415
HpyCH4V TGCA 4 cut(s) 95, 206, 254, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 2 cut(s) 369, 385
Hsp92II CATG 3 cut(s) 309, 397, 493
Ksp22I TGATCA 1 cut(s) 69
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 4 cut(s) 69, 359, 396, 531
LguI GCTCTTC 2 cut(s) 149, 464
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 6 cut(s) 27, 88, 191, 276, 538, 562
Lsp1109I GCAGC 3 cut(s) 79, 352, 577
LweI GCATC 1 cut(s) 37
MaeI CTAG 3 cut(s) 317, 326, 333
MaeIII GTNAC 1 cut(s) 589
MalI GATC 4 cut(s) 71, 361, 398, 533
MboI GATC 4 cut(s) 69, 359, 396, 531
MfeI CAATTG 5 cut(s) 30, 99, 255, 537, 639
MflI RGATCY 1 cut(s) 531
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 7 cut(s) 30, 99, 209, 255, 449, 537, 639
MnlI CCTC 3 cut(s) 129, 145, 324
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 2 cut(s) 84, 390
MslI CAYNNNNRTG 1 cut(s) 500
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 1 cut(s) 75
MunI CAATTG 5 cut(s) 30, 99, 255, 537, 639
Mva1269I GAATGC 1 cut(s) 473
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeI CATATG 1 cut(s) 283
NdeII GATC 4 cut(s) 69, 359, 396, 531
NlaIII CATG 3 cut(s) 309, 397, 493
NlaIV GGNNCC 2 cut(s) 312, 533
PciSI GCTCTTC 2 cut(s) 149, 464
PcsI WCGNNNNNNNCGW 1 cut(s) 477
PctI GAATGC 1 cut(s) 473
PdmI GAANNNNTTC 1 cut(s) 143
PkrI GCNGC 4 cut(s) 94, 193, 367, 567
PpuMI RGGWCCY 1 cut(s) 311
Psp5II RGGWCCY 1 cut(s) 311
PspN4I GGNNCC 2 cut(s) 312, 533
PspPI GGNCC 1 cut(s) 311
PspPPI RGGWCCY 1 cut(s) 311
PsuI RGATCY 1 cut(s) 531
RsaI GTAC 2 cut(s) 506, 575
RsaNI GTAC 2 cut(s) 505, 574
RseI CAYNNNNRTG 1 cut(s) 500
SapI GCTCTTC 2 cut(s) 149, 464
SaqAI TTAA 2 cut(s) 84, 390
SatI GCNGC 4 cut(s) 93, 192, 366, 566
Sau3AI GATC 4 cut(s) 69, 359, 396, 531
Sau96I GGNCC 1 cut(s) 311
SduI GDGCHC 1 cut(s) 459
SetI ASST 2 cut(s) 144, 407
SfaNI GCATC 1 cut(s) 37
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 2 cut(s) 149, 417
SmoI CTYRAG 2 cut(s) 149, 417
Sse9I AATT 7 cut(s) 30, 99, 209, 255, 449, 537, 639
SsiI CCGC 2 cut(s) 191, 363
SspMI CTAG 3 cut(s) 317, 326, 333
StyI CCWWGG 1 cut(s) 348
TaqI TCGA 1 cut(s) 107
TasI AATT 7 cut(s) 30, 99, 209, 255, 449, 537, 639
TatI WGTACW 1 cut(s) 504
TauI GCSGC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 84, 390
Tru9I TTAA 2 cut(s) 84, 390
TseI GCWGC 3 cut(s) 92, 365, 565
TspDTI ATGAA 3 cut(s) 262, 397, 451
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 2 cut(s) 209, 449
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 3 cut(s) 317, 326, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.