Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000545.1

Orthogroup ID

OG0014871

Physical Location & Seq

Genomic Coordinates Reverse (-)

52787 .. 53233

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000545.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggactgtggtggctccaaagtagacgacatcaaaacggcgtcggatacccgctacgccttggacgcagcccatctaacttatttccagtcgctcaagcaaatcggcgacgcgctttgcaagttcgttgacgaggacctagtcatcggcggcgtcggcgagtcatattcgctaccggattctccagttctgacattgccctccgtcgaaggaagccctggaaaggaaagccccaagggaaaagctcctcgtcgtcttcgatttcactctcgcatagtcaccggaatggtgagtgtgagttgctcgatggggatgttcctcgatcgccggaaagagatgagagagagagagagagagagaaacagagacgtggagggggaggggagagagagacagagacgtggagggggaggggagagagagagagatcggtctgcagagagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

148

Amino Acids

16.52

Weight (kDa)

8.49

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014871)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016735
rosa_multiflora	Rmu_sc0000545.1_g000012 Rmu_sc0000842.1_g000040 Rmu_sc0012270.1_g000001 Rmu_sc0015438.1_g000001 Rmu_sc0029718.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068330
rosa_samantha	Rh2BG146200 Rh3CG268200 Rh4AG055800 Rh4BG053200 Rh4BG054100 Rh4BG054500 Rh4CG060400 Rh6BG426700 Rh7AG370000 Rh7CG388900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	1 cut(s)	113
AciI	CCGC	2 cut(s)	52, 150
AcyI	GRCGYC	2 cut(s)	41, 153
AfiI	CCNNNNNNNGG	1 cut(s)	223
AjiI	CACGTC	2 cut(s)	370, 401
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw26I	GTCTC	3 cut(s)	360, 385, 391
ApeKI	GCWGC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	2 cut(s)	271, 301
AvaII	GGWCC	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	2 cut(s)	81, 301
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	219
BciVI	GTATCC	1 cut(s)	40
BcoDI	GTCTC	3 cut(s)	360, 385, 391
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	435
BfuI	GTATCC	1 cut(s)	40
BisI	GCNGC	2 cut(s)	69, 151
BlsI	GCNGC	2 cut(s)	70, 152
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	136
BmgBI	CACGTC	2 cut(s)	370, 401
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	80
BsaHI	GRCGYC	2 cut(s)	41, 153
BsaJI	CCNNGG	3 cut(s)	60, 217, 234
BsaWI	WCCGGW	2 cut(s)	175, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	88, 185
Bse3DI	GCAATG	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	3 cut(s)	60, 217, 234
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	194
BseNI	ACTGG	2 cut(s)	88, 185
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	113
Bsh1285I	CGRYCG	1 cut(s)	325
BsiEI	CGRYCG	1 cut(s)	325
BsiSI	CCGG	3 cut(s)	176, 282, 328
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	3 cut(s)	360, 385, 391
BsmBI	CGTCTC	2 cut(s)	360, 391
Bsp143I	GATC	2 cut(s)	322, 427
BspACI	CCGC	2 cut(s)	52, 150
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	16
BspMAI	CTGCAG	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	88, 185
BssECI	CCNNGG	3 cut(s)	60, 217, 234
BssMI	GATC	2 cut(s)	322, 427
BssNI	GRCGYC	2 cut(s)	41, 153
BssT1I	CCWWGG	2 cut(s)	60, 234
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	8
BstACI	GRCGYC	2 cut(s)	41, 153
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	2 cut(s)	325, 430
BstMAI	GTCTC	3 cut(s)	360, 385, 391
BstMBI	GATC	2 cut(s)	322, 427
BstMCI	CGRYCG	1 cut(s)	325
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 156
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	435
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	248
BsuI	GTATCC	1 cut(s)	40
BtrI	CACGTC	2 cut(s)	370, 401
BtsCI	GGATG	1 cut(s)	318
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	136
CseI	GACGC	4 cut(s)	30, 74, 119, 142
CviJI	RGCY	5 cut(s)	15, 71, 216, 231, 245
CviKI_1	RGCY	5 cut(s)	15, 71, 216, 231, 245
DpnI	GATC	2 cut(s)	324, 429
DpnII	GATC	2 cut(s)	322, 427
Eco130I	CCWWGG	2 cut(s)	60, 234
Eco47I	GGWCC	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	2 cut(s)	60, 234
ErhI	CCWWGG	2 cut(s)	60, 234
Esp3I	CGTCTC	2 cut(s)	360, 391
FaiI	YATR	2 cut(s)	166, 275
FauI	CCCGC	1 cut(s)	59
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	69, 151
FokI	GGATG	1 cut(s)	325
Fsp4HI	GCNGC	2 cut(s)	69, 151
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	2 cut(s)	69, 151
GsuI	CTGGAG	1 cut(s)	168
HapII	CCGG	3 cut(s)	176, 282, 328
HgaI	GACGC	4 cut(s)	30, 74, 119, 142
HhaI	GCGC	1 cut(s)	115
Hin1I	GRCGYC	2 cut(s)	41, 153
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	2 cut(s)	161, 179
HpaII	CCGG	3 cut(s)	176, 282, 328
HphI	GGTGA	2 cut(s)	271, 301
Hpy166II	GTNNAC	2 cut(s)	25, 130
Hpy188I	TCNGA	2 cut(s)	46, 192
Hpy8I	GTNNAC	2 cut(s)	25, 130
Hpy99I	CGWCG	5 cut(s)	46, 113, 158, 209, 255
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4IV	ACGT	2 cut(s)	369, 400
HpyCH4V	TGCA	2 cut(s)	120, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 156
HpySE526I	ACGT	2 cut(s)	369, 400
Hsp92I	GRCGYC	2 cut(s)	41, 153
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	2 cut(s)	322, 427
LmnI	GCTCC	2 cut(s)	20, 250
LpnPI	CCDG	7 cut(s)	101, 189, 198, 204, 231, 295, 341
Lsp1109I	GCAGC	1 cut(s)	80
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	2 cut(s)	369, 400
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	2 cut(s)	324, 429
MboI	GATC	2 cut(s)	322, 427
MboII	GAAGA	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	8 cut(s)	127, 211, 258, 329, 367, 373, 398, 404
MslI	CAYNNNNRTG	1 cut(s)	284
MspI	CCGG	3 cut(s)	176, 282, 328
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	2 cut(s)	65, 156
NdeII	GATC	2 cut(s)	322, 427
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	179
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	70, 152
Ple19I	CGATCG	1 cut(s)	325
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	136
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	136
PspPPI	RGGWCCY	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	439
PsyI	GACNNNGTC	1 cut(s)	140
PvuI	CGATCG	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	284
SatI	GCNGC	2 cut(s)	69, 151
Sau3AI	GATC	2 cut(s)	322, 427
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	4 cut(s)	141, 247, 372, 403
SfcI	CTRYAG	1 cut(s)	435
SinI	GGWCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SsiI	CCGC	2 cut(s)	52, 150
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	2 cut(s)	60, 234
TaaI	ACNGT	1 cut(s)	8
TaiI	ACGT	2 cut(s)	372, 403
TaqI	TCGA	4 cut(s)	207, 259, 305, 321
TaqII	GACCGA	1 cut(s)	420
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	179
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	277
TspGWI	ACGGA	1 cut(s)	193
Tth111I	GACNNNGTC	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	24
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.