Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0014871

Physical Location & Seq

Genomic Coordinates Reverse (-)

11799846 .. 11801617

Gene Structure 1772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG055800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAGCCCGAGGAATTTTGGACCATTAACTGTTCACATAGATCAGATGAACGAATTGCGACATTCAGTTGGATGCGTGGCCATTTTTTTTTATCATGCTTATGCTATCATAATCTATGAGATGTGCATTGAGGAGCCTACTGCAACTGTCACAAAGGTCAGACAACAGGAGAAGCTGAAGTATCCTCCATATCCTTTGAATACCATTGAGCTTGAAAAGCGTGCGTCAAGATACTTTCGAATGAGTTCTGAACATACTATGAAGGTAGCAGAAGAGCTTTACCAATCTGGTTTCATCAGTTATCCTCGCACAGAGACCGATGGCTTCTCTCCAAATACTGATTTGCATGTTAGATCTCTCATCAAGTTGGTGTATTTTTCTAGACACGAAGACCAATCAATTGATGACAAAAGGAAGAAAACTTTGAAGGAGAGACTGGGAATTTCCAATGGTAGTCGAAGAAGCTACCCTGTTCTTGGTGGAAGGCTTCATTTTGTGAAGTTTGAGACGACCAAGATTAATGAGTGCTTAGACTTCATTTATTCTAAACAACTTCACCGTGGAGGGATGGATGTTCGTATTTGGAATCCTGATGCCCCAACCAATGAAAATGCTGTAATTAAGGCAACAGGTGGTGGAGCTTACAAGTTTGCAGACCTTTTTAAGGAAAGGCTTGGG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DUF89 Fumble

Protein Analysis

226

Amino Acids

26.15

Weight (kDa)

9.12

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Topoisom_bac	PF01131	37 - 127	1.1e-22	DNA topoisomerase
Fumble	PF03630	119 - 225	2.5e-16	Fumble

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014871)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016735
rosa_multiflora	Rmu_sc0000545.1_g000012 Rmu_sc0000842.1_g000040 Rmu_sc0012270.1_g000001 Rmu_sc0015438.1_g000001 Rmu_sc0029718.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068330
rosa_samantha	Rh2BG146200 Rh3CG268200 Rh4AG055800 Rh4BG053200 Rh4BG054100 Rh4BG054500 Rh4CG060400 Rh6BG426700 Rh7AG370000 Rh7CG388900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	13, 441
AcuI	CTGAAG	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	476, 664
AgsI	TTSAA	3 cut(s)	199, 215, 427
AluBI	AGCT	5 cut(s)	175, 211, 277, 465, 641
AluI	AGCT	5 cut(s)	175, 211, 277, 465, 641
Alw26I	GTCTC	3 cut(s)	308, 427, 500
Ama87I	CYCGRG	1 cut(s)	7
AoxI	GGCC	1 cut(s)	78
ApoI	RAATTY	2 cut(s)	13, 441
AseI	ATTAAT	1 cut(s)	519
Asp700I	GAANNNNTTC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	548
AsuII	TTCGAA	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	20
BalI	TGGCCA	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	396
BccI	CCATC	2 cut(s)	314, 562
BciVI	GTATCC	1 cut(s)	192
BcoDI	GTCTC	3 cut(s)	308, 427, 500
BfaI	CTAG	1 cut(s)	381
BfuI	GTATCC	1 cut(s)	192
BglII	AGATCT	1 cut(s)	353
Bme18I	GGWCC	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	135
BmrI	ACTGGG	1 cut(s)	446
BmsI	GCATC	2 cut(s)	62, 583
BmuI	ACTGGG	1 cut(s)	446
BpiI	GAAGAC	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	238
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	2 cut(s)	8, 559
Bsc4I	CCNNNNNNNGG	2 cut(s)	476, 664
Bse1I	ACTGG	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	8, 559
BseGI	GGATG	3 cut(s)	77, 573, 577
BseLI	CCNNNNNNNGG	2 cut(s)	476, 664
BseNI	ACTGG	1 cut(s)	441
BseRI	GAGGAG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	80
BsiHKCI	CYCGRG	1 cut(s)	7
BslI	CCNNNNNNNGG	2 cut(s)	476, 664
BsmAI	GTCTC	3 cut(s)	308, 427, 500
BsmBI	CGTCTC	1 cut(s)	500
BsnI	GGCC	1 cut(s)	80
Bso31I	GGTCTC	1 cut(s)	308
BsoBI	CYCGRG	1 cut(s)	7
Bsp119I	TTCGAA	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	40, 353
BspANI	GGCC	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	135
BspQI	GCTCTTC	1 cut(s)	267
BspT104I	TTCGAA	1 cut(s)	238
BspTNI	GGTCTC	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	441
BssECI	CCNNGG	2 cut(s)	8, 559
BssMI	GATC	2 cut(s)	40, 353
Bst4CI	ACNGT	3 cut(s)	31, 148, 560
Bst6I	CTCTTC	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	529
BstDSI	CCRYGG	1 cut(s)	559
BstENI	CCTNNNNNAGG	1 cut(s)	662
BstF5I	GGATG	3 cut(s)	77, 573, 577
BstKTI	GATC	2 cut(s)	43, 356
BstMAI	GTCTC	3 cut(s)	308, 427, 500
BstMBI	GATC	2 cut(s)	40, 353
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	350
BstV2I	GAAGAC	1 cut(s)	396
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	80
BtgI	CCRYGG	1 cut(s)	559
BtsCI	GGATG	3 cut(s)	77, 573, 577
Cac8I	GCNNGC	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	20
CseI	GACGC	1 cut(s)	213
CviAII	CATG	2 cut(s)	95, 347
DdeI	CTNAG	1 cut(s)	529
DpnI	GATC	2 cut(s)	42, 355
DpnII	GATC	2 cut(s)	40, 353
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	662
EcoT38I	GRGCYC	1 cut(s)	8
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	2 cut(s)	98, 350
FaiI	YATR	9 cut(s)	38, 96, 102, 110, 117, 190, 255, 260, 348
FatI	CATG	2 cut(s)	94, 346
FokI	GGATG	3 cut(s)	84, 580, 584
FriOI	GRGCYC	1 cut(s)	8
FspBI	CTAG	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	80
HgaI	GACGC	1 cut(s)	213
Hin1II	CATG	2 cut(s)	98, 350
HinfI	GANTC	1 cut(s)	586
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	45, 161, 250
Hpy188III	TCNNGA	3 cut(s)	228, 381, 590
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	3 cut(s)	256, 421, 477
HpyCH4III	ACNGT	3 cut(s)	31, 148, 560
HpyCH4V	TGCA	4 cut(s)	126, 143, 346, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	1 cut(s)	529
Hsp92II	CATG	2 cut(s)	98, 350
Kzo9I	GATC	2 cut(s)	40, 353
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	2 cut(s)	133, 638
LpnPI	CCDG	6 cut(s)	152, 273, 422, 483, 603, 615
LweI	GCATC	2 cut(s)	62, 583
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	2 cut(s)	42, 355
MboI	GATC	2 cut(s)	40, 353
MboII	GAAGA	4 cut(s)	284, 401, 427, 471
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	5 cut(s)	13, 53, 399, 441, 618
MluNI	TGGCCA	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	5 cut(s)	3, 124, 195, 315, 557
Mox20I	TGGCCA	1 cut(s)	80
MroXI	GAANNNNTTC	1 cut(s)	244
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	4 cut(s)	26, 519, 621, 663
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	80
MunI	CAATTG	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	2 cut(s)	40, 353
NlaIII	CATG	2 cut(s)	98, 350
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	350
NspV	TTCGAA	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	586
PshBI	ATTAAT	1 cut(s)	519
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	4 cut(s)	26, 519, 621, 663
Sau3AI	GATC	2 cut(s)	40, 353
Sau96I	GGNCC	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	9 cut(s)	159, 177, 213, 267, 279, 467, 634, 643, 660
SfaNI	GCATC	2 cut(s)	62, 583
SfuI	TTCGAA	1 cut(s)	238
SinI	GGWCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	5 cut(s)	13, 53, 399, 441, 618
SspMI	CTAG	1 cut(s)	381
TaaI	ACNGT	3 cut(s)	31, 148, 560
TaqI	TCGA	2 cut(s)	238, 457
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	5 cut(s)	13, 53, 399, 441, 618
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	4 cut(s)	26, 519, 621, 663
Tru9I	TTAA	4 cut(s)	26, 519, 621, 663
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	6 cut(s)	62, 275, 283, 479, 526, 621
VpaK11BI	GGWCC	1 cut(s)	20
VspI	ATTAAT	1 cut(s)	519
XagI	CCTNNNNNAGG	1 cut(s)	662
XapI	RAATTY	2 cut(s)	13, 441
XbaI	TCTAGA	1 cut(s)	380
XceI	RCATGY	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	244
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.