Rroxscaffold_1G00068330

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014871
Physical Location & Seq
Forward (+)
89550013 .. 89550279
267 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00068330.1

Sequence Viewer

Length: 267 bp
ATGGACTGTGGTGGCTCCAAAGTAGACGACATCAAAACGGCGTCGGATACCCGCTACGCCTTGGACGCAGCCCATCTAACTTATTTTCGGTCGCTCGAGCAAATCGGCGACGCGCTTTGCAAGTTCGTTGGCGAGGACCTAGTCATCGGCGGCGTCGGCGAGTCCTATTCGCTCTCCGGTTCGACATTGCCCTCCGACGAAGGAAGCCCGGAAAGGAAAGCCCCGAGGGAAAAGCTCCTCGTCGTCTTCGATTTCACTCTCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

88

Amino Acids

9.43

Weight (kDa)

4.53

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF630 PF04783 11 - 45 4.7e-09 Protein of unknown function (DUF630)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 113
AciI CCGC 2 cut(s) 52, 150
AcyI GRCGYC 2 cut(s) 41, 153
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Ama87I CYCGRG 2 cut(s) 95, 223
ApeKI GCWGC 1 cut(s) 68
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 136
AsuC2I CCSGG 1 cut(s) 209
AvaI CYCGRG 2 cut(s) 95, 223
AvaII GGWCC 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 238
BbvI GCAGC 1 cut(s) 80
BccI CCATC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 54
BciVI GTATCC 1 cut(s) 40
BcnI CCSGG 1 cut(s) 209
BfaI CTAG 1 cut(s) 140
BfuI GTATCC 1 cut(s) 40
BisI GCNGC 2 cut(s) 69, 151
BlsI GCNGC 2 cut(s) 70, 152
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 2 cut(s) 95, 223
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 238
BpuMI CCSGG 1 cut(s) 209
BsaHI GRCGYC 2 cut(s) 41, 153
BsaJI CCNNGG 2 cut(s) 60, 224
BsaWI WCCGGW 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 60, 224
BseMI GCAATG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 92
BsiEI CGRYCG 1 cut(s) 92
BsiHKCI CYCGRG 2 cut(s) 95, 223
BsiSI CCGG 2 cut(s) 177, 209
BsoBI CYCGRG 2 cut(s) 95, 223
BspACI CCGC 2 cut(s) 52, 150
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 60, 224
BssNI GRCGYC 2 cut(s) 41, 153
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 8
BstACI GRCGYC 2 cut(s) 41, 153
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 115
BstMCI CGRYCG 1 cut(s) 92
BstMWI GCNNNNNNNGC 2 cut(s) 65, 156
BstSCI CCNGG 1 cut(s) 207
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 238
BsuI GTATCC 1 cut(s) 40
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 136
CseI GACGC 4 cut(s) 30, 74, 119, 142
CviJI RGCY 5 cut(s) 15, 71, 207, 221, 235
CviKI_1 RGCY 5 cut(s) 15, 71, 207, 221, 235
Eco130I CCWWGG 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 136
Eco88I CYCGRG 2 cut(s) 95, 223
EcoO109I RGGNCCY 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaiI YATR 1 cut(s) 265
FauI CCCGC 1 cut(s) 59
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 69, 151
Fsp4HI GCNGC 2 cut(s) 69, 151
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 114
GluI GCNGC 2 cut(s) 69, 151
HapII CCGG 2 cut(s) 177, 209
HgaI GACGC 4 cut(s) 30, 74, 119, 142
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 2 cut(s) 41, 153
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HinfI GANTC 1 cut(s) 161
HpaII CCGG 2 cut(s) 177, 209
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 46, 196
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 5 cut(s) 46, 113, 158, 200, 245
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 120
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 156
Hsp92I GRCGYC 2 cut(s) 41, 153
HspAI GCGC 1 cut(s) 113
LmnI GCTCC 2 cut(s) 20, 240
LpnPI CCDG 2 cut(s) 190, 222
Lsp1109I GCAGC 1 cut(s) 80
MaeI CTAG 1 cut(s) 140
MboII GAAGA 1 cut(s) 238
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 2 cut(s) 24, 219
MnlI CCTC 4 cut(s) 127, 202, 219, 248
MspI CCGG 2 cut(s) 177, 209
MspR9I CCNGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 65, 156
NciI CCSGG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 16
PaeR7I CTCGAG 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 70, 152
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 136
PspPPI RGGWCCY 1 cut(s) 136
PspXI VCTCGAGB 1 cut(s) 95
PsyI GACNNNGTC 1 cut(s) 140
SatI GCNGC 2 cut(s) 69, 151
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 209
SetI ASST 2 cut(s) 141, 237
Sfr274I CTCGAG 1 cut(s) 95
SinI GGWCC 1 cut(s) 136
SlaI CTCGAG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SsiI CCGC 2 cut(s) 52, 150
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 3 cut(s) 96, 182, 249
TaqII GACCGA 1 cut(s) 78
TauI GCSGC 1 cut(s) 153
TseI GCWGC 1 cut(s) 68
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 136
XhoI CTCGAG 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.