Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0014871

Physical Location & Seq

Genomic Coordinates Reverse (-)

9827655 .. 9840298

Gene Structure 12644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG054500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAGCTTCTCAGCTTTCTCTGTGCTTTCAGTTTGTCGCAATCATCATCTGCTTCAGCTATTTGGAGGCCCACAGTGGCTTACCGTCAAATGGGGTTCACATTGTTATGTCAAGAAGGTGAAAGAAGTGTTGGAGAGTAAAGGGTGTCAGATAAGAACCGGCTCTGAGGTGCATAAAGTTTCCACAACTGATGAGGGTTGCACTGTTTTTACTGGAGATGGTATTGAGGAAATTTACAATAAATGCATAATAGCTATCCATGCCCCTGATGCCGTGAGAATATTAGGAGAACAGGCAACATCTGATGAACTGAGAATACTTGGCGCCTTCCAATATGTGTACTGTGATATTTTCCTTCATCGTGACAAAACTTTAATGCCCCAAAATCTAGCAGCATGGAGTGCATTGAACTATCTTGGAAGTACTGACAACAAAGTATGTTTGACATACTGGCTCAATCAGCTTCAGAACCTCAGTGAAACAAGTCAACCATATCTTGTGACACTCAATCCAGATCATACACCAAACCACACCTTGCTTAAGTGGTCAACAAGCCATCCAGTCCTATCTGTTGCAGCATCAAAAGCTTCGCTGGAGTTTCCTCATATTCAAGGAAAGAGAGGAATTTGGTTTTGTGGAGCATACCTGGGTTACGGCTTCCATGAGGATGGGCTAAAGGGTCGCTGCACTTGGGTGGAGGCGAGCGAGGTGCAGGTGACAACCCAGATGAGTTATGAGTTCTGGCCGGCTGTGGGCTGCGCCGAGGTCGGGTCGGTGCTGGAGGTGGATCACCGGCAGTATTGGGCTTCTCGAACGCCGATCGGATCGCCGGAATCTGGTGCTGTAGGTGGGAGTCCTTCCAAGACAGGTGAGTGTCTGTGTGGGCTGGAGATGCCGGGGACGGATCACTGCAGTCGGAGGCGCGGGATTTGCGCAGGAGGAGCGGGCTGTGGGGCTTCGTGGCCTGCTGTGAATTCCGATTCCGATTCCGATGTCTCTGGCGGCCGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0008825 GO:0009987 GO:0016740 GO:0016741 GO:0030258 GO:0032259 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase CMAS NAD_binding_8

Protein Analysis

337

Amino Acids

36.82

Weight (kDa)

6.0

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014871)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016735
rosa_multiflora	Rmu_sc0000545.1_g000012 Rmu_sc0000842.1_g000040 Rmu_sc0012270.1_g000001 Rmu_sc0015438.1_g000001 Rmu_sc0029718.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068330
rosa_samantha	Rh2BG146200 Rh3CG268200 Rh4AG055800 Rh4BG053200 Rh4BG054100 Rh4BG054500 Rh4CG060400 Rh6BG426700 Rh7AG370000 Rh7CG388900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	703
Acc16I	TGCGCA	1 cut(s)	934
Acc36I	ACCTGC	1 cut(s)	703
AccB1I	GGYRCC	1 cut(s)	323
AccBSI	CCGCTC	1 cut(s)	944
AccII	CGCG	1 cut(s)	924
AciI	CCGC	3 cut(s)	924, 944, 1002
AclWI	GGATC	3 cut(s)	795, 832, 912
AcoI	YGGCCR	2 cut(s)	743, 1003
AcsI	RAATTY	3 cut(s)	231, 624, 973
AcuI	CTGAAG	2 cut(s)	38, 449
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	2 cut(s)	341, 424
AfiI	CCNNNNNNNGG	4 cut(s)	90, 752, 768, 836
AflII	CTTAAG	1 cut(s)	539
AgsI	TTSAA	2 cut(s)	409, 611
AjnI	CCWGG	1 cut(s)	645
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AleI	CACNNNNGTG	1 cut(s)	692
AluBI	AGCT	6 cut(s)	6, 14, 58, 254, 463, 587
AluI	AGCT	6 cut(s)	6, 14, 58, 254, 463, 587
Alw26I	GTCTC	1 cut(s)	1000
AlwI	GGATC	3 cut(s)	795, 832, 912
AoxI	GGCC	4 cut(s)	67, 743, 962, 1003
ApeKI	GCWGC	4 cut(s)	392, 575, 684, 756
ApoI	RAATTY	3 cut(s)	231, 624, 973
AspLEI	GCGC	4 cut(s)	326, 761, 924, 935
AspS9I	GGNCC	1 cut(s)	68
AsuC2I	CCSGG	1 cut(s)	897
AsuHPI	GGTGA	4 cut(s)	130, 727, 782, 881
BanI	GGYRCC	1 cut(s)	323
BbvI	GCAGC	4 cut(s)	404, 587, 671, 743
BccI	CCATC	3 cut(s)	212, 564, 662
BceAI	ACGGC	3 cut(s)	257, 670, 990
BcgI	CGANNNNNNTGC	2 cut(s)	691, 725
BciT130I	CCWGG	1 cut(s)	647
BcnI	CCSGG	1 cut(s)	897
BcoDI	GTCTC	1 cut(s)	1000
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	2 cut(s)	843, 910
BfoI	RGCGCY	1 cut(s)	327
BfrI	CTTAAG	1 cut(s)	539
BfuAI	ACCTGC	1 cut(s)	703
BisI	GCNGC	5 cut(s)	393, 576, 685, 757, 1003
BlsI	GCNGC	5 cut(s)	394, 577, 686, 758, 1004
BmcAI	AGTACT	1 cut(s)	424
Bme1390I	CCNGG	2 cut(s)	647, 897
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	2 cut(s)	647, 897
BmsI	GCATC	3 cut(s)	259, 587, 882
BpmI	CTGGAG	4 cut(s)	234, 614, 800, 908
BpuMI	CCSGG	1 cut(s)	897
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	646, 762, 896
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 752, 768, 836
Bse118I	RCCGGY	3 cut(s)	158, 745, 792
Bse1I	ACTGG	3 cut(s)	217, 455, 560
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	3 cut(s)	646, 762, 896
BseGI	GGATG	2 cut(s)	556, 673
BseLI	CCNNNNNNNGG	4 cut(s)	90, 752, 768, 836
BseMII	CTCAG	4 cut(s)	24, 156, 302, 487
BseNI	ACTGG	3 cut(s)	217, 455, 560
BseRI	GAGGAG	1 cut(s)	954
BseX3I	CGGCCG	1 cut(s)	1003
BseXI	GCAGC	4 cut(s)	404, 587, 671, 743
BsgI	GTGCAG	2 cut(s)	670, 731
Bsh1236I	CGCG	1 cut(s)	924
Bsh1285I	CGRYCG	2 cut(s)	822, 1006
BshFI	GGCC	4 cut(s)	69, 745, 964, 1005
BshNI	GGYRCC	1 cut(s)	323
BsiEI	CGRYCG	2 cut(s)	822, 1006
BsiSI	CCGG	5 cut(s)	159, 746, 793, 830, 896
BslFI	GGGAC	1 cut(s)	913
BslI	CCNNNNNNNGG	4 cut(s)	90, 752, 768, 836
BsmAI	GTCTC	1 cut(s)	1000
BsmFI	GGGAC	1 cut(s)	913
BsnI	GGCC	4 cut(s)	69, 745, 964, 1005
Bsp143I	GATC	5 cut(s)	514, 787, 819, 824, 904
BspACI	CCGC	3 cut(s)	924, 944, 1002
BspANI	GGCC	4 cut(s)	69, 745, 964, 1005
BspCNI	CTCAG	4 cut(s)	23, 157, 303, 486
BspFNI	CGCG	1 cut(s)	924
BspLI	GGNNCC	1 cut(s)	325
BspMAI	CTGCAG	1 cut(s)	914
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	3 cut(s)	795, 832, 912
BspT107I	GGYRCC	1 cut(s)	323
BspTI	CTTAAG	1 cut(s)	539
BsrBI	CCGCTC	1 cut(s)	944
BsrFI	RCCGGY	3 cut(s)	158, 745, 792
BsrI	ACTGG	3 cut(s)	217, 455, 560
BssAI	RCCGGY	3 cut(s)	158, 745, 792
BssECI	CCNNGG	3 cut(s)	646, 762, 896
BssMI	GATC	5 cut(s)	514, 787, 819, 824, 904
BssNI	GRCGYC	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	4 cut(s)	75, 85, 205, 344
BstACI	GRCGYC	1 cut(s)	324
BstAFI	CTTAAG	1 cut(s)	539
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	4 cut(s)	703, 747, 946, 966
BstDEI	CTNAG	4 cut(s)	10, 165, 311, 473
BstF5I	GGATG	2 cut(s)	556, 673
BstFNI	CGCG	1 cut(s)	924
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	4 cut(s)	326, 761, 924, 935
BstKTI	GATC	5 cut(s)	517, 790, 822, 827, 907
BstMAI	GTCTC	1 cut(s)	1000
BstMBI	GATC	5 cut(s)	514, 787, 819, 824, 904
BstMCI	CGRYCG	2 cut(s)	822, 1006
BstMWI	GCNNNNNNNGC	8 cut(s)	260, 269, 401, 460, 584, 892, 930, 941
BstNI	CCWGG	1 cut(s)	647
BstSCI	CCNGG	2 cut(s)	645, 895
BstSFI	CTRYAG	2 cut(s)	843, 910
BstUI	CGCG	1 cut(s)	924
BstV1I	GCAGC	4 cut(s)	404, 587, 671, 743
BstXI	CCANNNNNNTGG	1 cut(s)	668
BstZI	CGGCCG	1 cut(s)	1003
BsuRI	GGCC	4 cut(s)	69, 745, 964, 1005
BtsCI	GGATG	2 cut(s)	556, 673
BtsI	GCAGTG	1 cut(s)	907
BtsIMutI	CAGTG	4 cut(s)	80, 201, 481, 907
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	4 cut(s)	703, 747, 946, 966
CfoI	GCGC	4 cut(s)	326, 761, 924, 935
Cfr10I	RCCGGY	3 cut(s)	158, 745, 792
Cfr13I	GGNCC	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	340, 423
CviAII	CATG	3 cut(s)	260, 396, 662
CviQI	GTAC	2 cut(s)	340, 423
DdeI	CTNAG	4 cut(s)	10, 165, 311, 473
DinI	GGCGCC	1 cut(s)	325
DpnI	GATC	5 cut(s)	516, 789, 821, 826, 906
DpnII	GATC	5 cut(s)	514, 787, 819, 824, 904
EaeI	YGGCCR	2 cut(s)	743, 1003
EagI	CGGCCG	1 cut(s)	1003
EclXI	CGGCCG	1 cut(s)	1003
Eco52I	CGGCCG	1 cut(s)	1003
Eco57I	CTGAAG	2 cut(s)	38, 449
EcoRI	GAATTC	1 cut(s)	973
EcoRII	CCWGG	1 cut(s)	645
EcoT22I	ATGCAT	1 cut(s)	248
EgeI	GGCGCC	1 cut(s)	325
EheI	GGCGCC	1 cut(s)	325
FaeI	CATG	3 cut(s)	263, 399, 665
FaqI	GGGAC	1 cut(s)	913
FatI	CATG	3 cut(s)	259, 395, 661
FauI	CCCGC	2 cut(s)	917, 937
Fnu4HI	GCNGC	5 cut(s)	393, 576, 685, 757, 1003
FokI	GGATG	2 cut(s)	543, 680
Fsp4HI	GCNGC	5 cut(s)	393, 576, 685, 757, 1003
FspBI	CTAG	1 cut(s)	389
FspI	TGCGCA	1 cut(s)	934
GlaI	GCGC	4 cut(s)	325, 760, 923, 934
GluI	GCNGC	5 cut(s)	393, 576, 685, 757, 1003
GsuI	CTGGAG	4 cut(s)	234, 614, 800, 908
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	4 cut(s)	69, 745, 964, 1005
HapII	CCGG	5 cut(s)	159, 746, 793, 830, 896
HhaI	GCGC	4 cut(s)	326, 761, 924, 935
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	3 cut(s)	263, 399, 665
Hin6I	GCGC	4 cut(s)	324, 759, 922, 933
HinP1I	GCGC	4 cut(s)	324, 759, 922, 933
HincII	GTYRAC	2 cut(s)	488, 549
HindII	GTYRAC	2 cut(s)	488, 549
HindIII	AAGCTT	1 cut(s)	585
HinfI	GANTC	4 cut(s)	833, 853, 980, 986
HpaII	CCGG	5 cut(s)	159, 746, 793, 830, 896
HphI	GGTGA	4 cut(s)	130, 727, 782, 881
Hpy166II	GTNNAC	4 cut(s)	98, 340, 488, 549
Hpy188I	TCNGA	9 cut(s)	150, 166, 304, 468, 824, 918, 979, 985, 991
Hpy188III	TCNNGA	4 cut(s)	112, 362, 512, 810
Hpy8I	GTNNAC	4 cut(s)	98, 340, 488, 549
HpyAV	CCTTC	4 cut(s)	109, 337, 365, 867
HpyCH4III	ACNGT	4 cut(s)	75, 85, 205, 344
HpyCH4V	TGCA	8 cut(s)	172, 201, 246, 404, 575, 687, 712, 912
HpyF10VI	GCNNNNNNNGC	8 cut(s)	260, 269, 401, 460, 584, 892, 930, 941
HpyF3I	CTNAG	4 cut(s)	10, 165, 311, 473
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	3 cut(s)	263, 399, 665
HspAI	GCGC	4 cut(s)	324, 759, 922, 933
KasI	GGCGCC	1 cut(s)	323
KroI	GCCGGC	1 cut(s)	745
KroNI	GCCGGC	1 cut(s)	747
Kzo9I	GATC	5 cut(s)	514, 787, 819, 824, 904
LmnI	GCTCC	2 cut(s)	638, 941
Lsp1109I	GCAGC	4 cut(s)	404, 587, 671, 743
LweI	GCATC	3 cut(s)	259, 587, 882
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	5 cut(s)	362, 499, 650, 715, 1007
MalI	GATC	5 cut(s)	516, 789, 821, 826, 906
MbiI	CCGCTC	1 cut(s)	944
MboI	GATC	5 cut(s)	514, 787, 819, 824, 904
MluCI	AATT	3 cut(s)	231, 624, 973
Mly113I	GGCGCC	1 cut(s)	324
MlyI	GAGTC	1 cut(s)	862
MmeI	TCCRAC	2 cut(s)	111, 896
Mph1103I	ATGCAT	1 cut(s)	248
MroNI	GCCGGC	1 cut(s)	745
MseI	TTAA	2 cut(s)	374, 540
MslI	CAYNNNNRTG	3 cut(s)	105, 666, 692
MspCI	CTTAAG	1 cut(s)	539
MspI	CCGG	5 cut(s)	159, 746, 793, 830, 896
MspR9I	CCNGG	2 cut(s)	647, 897
MvaI	CCWGG	1 cut(s)	647
MvnI	CGCG	1 cut(s)	924
MwoI	GCNNNNNNNGC	8 cut(s)	260, 269, 401, 460, 584, 892, 930, 941
NaeI	GCCGGC	1 cut(s)	747
NarI	GGCGCC	1 cut(s)	324
NciI	CCSGG	1 cut(s)	897
NdeII	GATC	5 cut(s)	514, 787, 819, 824, 904
NgoMIV	GCCGGC	1 cut(s)	745
NlaIII	CATG	3 cut(s)	263, 399, 665
NlaIV	GGNNCC	1 cut(s)	325
NmeAIII	GCCGAG	1 cut(s)	787
NmuCI	GTSAC	4 cut(s)	362, 499, 715, 1007
NsbI	TGCGCA	1 cut(s)	934
NsiI	ATGCAT	1 cut(s)	248
OliI	CACNNNNGTG	1 cut(s)	692
PaqCI	CACCTGC	1 cut(s)	703
PdiI	GCCGGC	1 cut(s)	747
PfeI	GAWTC	3 cut(s)	833, 980, 986
PkrI	GCNGC	5 cut(s)	394, 577, 686, 758, 1004
Ple19I	CGATCG	1 cut(s)	822
PleI	GAGTC	1 cut(s)	861
PluTI	GGCGCC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	861
Psp6I	CCWGG	1 cut(s)	645
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	68
PsrI	GAACNNNNNNTAC	2 cut(s)	300, 332
PstI	CTGCAG	1 cut(s)	914
PvuI	CGATCG	1 cut(s)	822
RsaI	GTAC	2 cut(s)	341, 424
RsaNI	GTAC	2 cut(s)	340, 423
RseI	CAYNNNNRTG	3 cut(s)	105, 666, 692
SaqAI	TTAA	2 cut(s)	374, 540
SatI	GCNGC	5 cut(s)	393, 576, 685, 757, 1003
Sau3AI	GATC	5 cut(s)	514, 787, 819, 824, 904
Sau96I	GGNCC	1 cut(s)	68
ScaI	AGTACT	1 cut(s)	424
SchI	GAGTC	1 cut(s)	862
ScrFI	CCNGG	2 cut(s)	647, 897
SfaNI	GCATC	3 cut(s)	259, 587, 882
SfcI	CTRYAG	2 cut(s)	843, 910
SfoI	GGCGCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	3 cut(s)	105, 666, 692
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	3 cut(s)	231, 624, 973
SsiI	CCGC	3 cut(s)	924, 944, 1002
SspDI	GGCGCC	1 cut(s)	323
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	645, 895
TaaI	ACNGT	4 cut(s)	75, 85, 205, 344
TaqI	TCGA	1 cut(s)	811
TasI	AATT	3 cut(s)	231, 624, 973
TatI	WGTACW	2 cut(s)	339, 422
TauI	GCSGC	1 cut(s)	1005
TfiI	GAWTC	3 cut(s)	833, 980, 986
Tru1I	TTAA	2 cut(s)	374, 540
Tru9I	TTAA	2 cut(s)	374, 540
TscAI	CASTG	4 cut(s)	80, 208, 481, 914
TseFI	GTSAC	4 cut(s)	362, 499, 715, 1007
TseI	GCWGC	4 cut(s)	392, 575, 684, 756
Tsp45I	GTSAC	4 cut(s)	362, 499, 715, 1007
TspDTI	ATGAA	2 cut(s)	321, 347
TspGWI	ACGGA	1 cut(s)	917
TspRI	CASTG	4 cut(s)	80, 208, 481, 914
Vha464I	CTTAAG	1 cut(s)	539
XapI	RAATTY	3 cut(s)	231, 624, 973
XspI	CTAG	1 cut(s)	389
ZrmI	AGTACT	1 cut(s)	424
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.