Rmu_sc0012270.1_g000001

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012270.1
OG0014871
Physical Location & Seq
Reverse (-)
273 .. 704
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012270.1_g000001.1.cds

Sequence Viewer

Length: 432 bp
atggactgtggtggctccaaagtagacgacatcaaaacggcgtcggatacccgctacgccttggacgcagcccatctaacttatttccagtcgctcaagcaaatcggcgacgcgctttgcaagttcgttgacgaggacctagtcatcggcggcgtcggcgagtcatattcgctaccggattctccagttctgacattgccctccgtcgaaggaagcccgggaaaggaaagccccaagggaaaagctcctcgttgtcttcgatttcactctcgcatagtcaccggaatggtgagtgtgagttgctcgatggggatgttcctcgatcgccggaaagagatgagagagcgagagagagacagagacgtggagggggaggggagagagagagagatcggtctgcagagagatagaggagagagagtgaagctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

143

Amino Acids

15.88

Weight (kDa)

6.16

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 113
AciI CCGC 2 cut(s) 52, 150
AcyI GRCGYC 2 cut(s) 41, 153
AfiI CCNNNNNNNGG 1 cut(s) 223
AjiI CACGTC 1 cut(s) 364
AluBI AGCT 2 cut(s) 245, 427
AluI AGCT 2 cut(s) 245, 427
Alw26I GTCTC 2 cut(s) 348, 354
Ama87I CYCGRG 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 68
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 136
AsuC2I CCSGG 2 cut(s) 218, 219
AsuHPI GGTGA 2 cut(s) 271, 301
AvaI CYCGRG 1 cut(s) 217
AvaII GGWCC 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 80
BccI CCATC 2 cut(s) 81, 301
BceAI ACGGC 1 cut(s) 54
BciVI GTATCC 1 cut(s) 40
BcnI CCSGG 2 cut(s) 218, 219
BcoDI GTCTC 2 cut(s) 348, 354
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 398
BfuI GTATCC 1 cut(s) 40
BisI GCNGC 2 cut(s) 69, 151
BlsI GCNGC 2 cut(s) 70, 152
Bme1390I CCNGG 2 cut(s) 218, 219
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 217
BmgBI CACGTC 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 2 cut(s) 218, 219
BpiI GAAGAC 1 cut(s) 248
BpmI CTGGAG 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 2 cut(s) 218, 219
BsaHI GRCGYC 2 cut(s) 41, 153
BsaJI CCNNGG 3 cut(s) 60, 217, 234
BsaWI WCCGGW 2 cut(s) 175, 281
BsaXI ACNNNNNCTCC 1 cut(s) 405
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse1I ACTGG 2 cut(s) 88, 185
Bse3DI GCAATG 1 cut(s) 194
BseDI CCNNGG 3 cut(s) 60, 217, 234
BseGI GGATG 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMI GCAATG 1 cut(s) 194
BseNI ACTGG 2 cut(s) 88, 185
BseRI GAGGAG 2 cut(s) 237, 426
BseXI GCAGC 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 325
BsiEI CGRYCG 1 cut(s) 325
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 4 cut(s) 176, 218, 282, 328
BslI CCNNNNNNNGG 1 cut(s) 223
BsmAI GTCTC 2 cut(s) 348, 354
BsmBI CGTCTC 1 cut(s) 354
BsoBI CYCGRG 1 cut(s) 217
Bsp143I GATC 2 cut(s) 322, 390
BspACI CCGC 2 cut(s) 52, 150
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 16
BspMAI CTGCAG 1 cut(s) 402
BsrDI GCAATG 1 cut(s) 194
BsrI ACTGG 2 cut(s) 88, 185
BssECI CCNNGG 3 cut(s) 60, 217, 234
BssMI GATC 2 cut(s) 322, 390
BssNI GRCGYC 2 cut(s) 41, 153
BssT1I CCWWGG 2 cut(s) 60, 234
Bst4CI ACNGT 1 cut(s) 8
BstACI GRCGYC 2 cut(s) 41, 153
BstF5I GGATG 1 cut(s) 318
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 2 cut(s) 325, 393
BstMAI GTCTC 2 cut(s) 348, 354
BstMBI GATC 2 cut(s) 322, 390
BstMCI CGRYCG 1 cut(s) 325
BstMWI GCNNNNNNNGC 2 cut(s) 65, 156
BstSCI CCNGG 2 cut(s) 216, 217
BstSFI CTRYAG 1 cut(s) 398
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 248
BsuI GTATCC 1 cut(s) 40
BtrI CACGTC 1 cut(s) 364
BtsCI GGATG 1 cut(s) 318
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 136
Cfr9I CCCGGG 1 cut(s) 217
CseI GACGC 4 cut(s) 30, 74, 119, 142
CviJI RGCY 6 cut(s) 15, 71, 216, 231, 245, 427
CviKI_1 RGCY 6 cut(s) 15, 71, 216, 231, 245, 427
DpnI GATC 2 cut(s) 324, 392
DpnII GATC 2 cut(s) 322, 390
Eco130I CCWWGG 2 cut(s) 60, 234
Eco47I GGWCC 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 217
EcoO109I RGGNCCY 1 cut(s) 136
EcoT14I CCWWGG 2 cut(s) 60, 234
ErhI CCWWGG 2 cut(s) 60, 234
Esp3I CGTCTC 1 cut(s) 354
FaiI YATR 2 cut(s) 166, 275
FauI CCCGC 1 cut(s) 59
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 69, 151
FokI GGATG 1 cut(s) 325
Fsp4HI GCNGC 2 cut(s) 69, 151
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 114
GluI GCNGC 2 cut(s) 69, 151
GsuI CTGGAG 1 cut(s) 168
HapII CCGG 4 cut(s) 176, 218, 282, 328
HgaI GACGC 4 cut(s) 30, 74, 119, 142
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 2 cut(s) 41, 153
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 2 cut(s) 161, 179
HpaII CCGG 4 cut(s) 176, 218, 282, 328
HphI GGTGA 2 cut(s) 271, 301
Hpy166II GTNNAC 2 cut(s) 25, 130
Hpy188I TCNGA 2 cut(s) 46, 192
Hpy8I GTNNAC 2 cut(s) 25, 130
Hpy99I CGWCG 4 cut(s) 46, 113, 158, 209
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 2 cut(s) 120, 400
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 156
HpySE526I ACGT 1 cut(s) 363
Hsp92I GRCGYC 2 cut(s) 41, 153
HspAI GCGC 1 cut(s) 113
Kzo9I GATC 2 cut(s) 322, 390
LmnI GCTCC 2 cut(s) 20, 250
LpnPI CCDG 6 cut(s) 101, 189, 198, 231, 295, 341
Lsp1109I GCAGC 1 cut(s) 80
MaeI CTAG 1 cut(s) 140
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 277
MalI GATC 2 cut(s) 324, 392
MboI GATC 2 cut(s) 322, 390
MboII GAAGA 1 cut(s) 248
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 7 cut(s) 127, 211, 258, 329, 361, 367, 404
MslI CAYNNNNRTG 1 cut(s) 284
MspI CCGG 4 cut(s) 176, 218, 282, 328
MspR9I CCNGG 2 cut(s) 218, 219
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 65, 156
NciI CCSGG 2 cut(s) 218, 219
NdeII GATC 2 cut(s) 322, 390
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 256
PfeI GAWTC 1 cut(s) 179
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 70, 152
Ple19I CGATCG 1 cut(s) 325
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 136
PspPPI RGGWCCY 1 cut(s) 136
PstI CTGCAG 1 cut(s) 402
PsyI GACNNNGTC 1 cut(s) 140
PvuI CGATCG 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 284
SatI GCNGC 2 cut(s) 69, 151
Sau3AI GATC 2 cut(s) 322, 390
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 218, 219
SetI ASST 4 cut(s) 141, 247, 366, 429
SfcI CTRYAG 1 cut(s) 398
SinI GGWCC 1 cut(s) 136
SmaI CCCGGG 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SsiI CCGC 2 cut(s) 52, 150
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 2 cut(s) 216, 217
StyI CCWWGG 2 cut(s) 60, 234
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 1 cut(s) 366
TaqI TCGA 4 cut(s) 207, 259, 305, 321
TaqII GACCGA 1 cut(s) 383
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 1 cut(s) 179
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 277
TspGWI ACGGA 1 cut(s) 193
TspMI CCCGGG 1 cut(s) 217
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 136
XmaI CCCGGG 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.