Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029718.1

Orthogroup ID

OG0014871

Physical Location & Seq

Genomic Coordinates Reverse (-)

1741 .. 3180

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029718.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggactgtggtggctccaaagtagacgacatcaaaacggcgtcggatacccgctacgccttggacgcagcccatctaacttatttccagtcgctcaagcaaatcggcgacgcgctttgcaagttcgttgacgaggacctagtcatcggcggcgtcggcgagtcatattcgctaccggattctccagttctgacattgccctccgtcgaaggaagcccgggaaatgaaagccccaagggaaaagctcctcgagctcaatataggcacctccggcgaactggaccgactcgattccccacctcacccctcacggccgcgccgacgccctcgtcccctccttttcctccccctctctacttcgactccgctcacgtgcgcacgcccttccctgaagcccgccgcctcatgacgacaaaaaatgatgcgttcgtttcctacgcgcagcagcagaacaattgcttcccctctaagtactcgcctctggcggcagactgtgatccgcatatccaattcgccatcgaagcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

175

Amino Acids

19.02

Weight (kDa)

6.05

Isoelectric Point (pI)

65.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014871)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016735
rosa_multiflora	Rmu_sc0000545.1_g000012 Rmu_sc0000842.1_g000040 Rmu_sc0012270.1_g000001 Rmu_sc0015438.1_g000001 Rmu_sc0029718.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068330
rosa_samantha	Rh2BG146200 Rh3CG268200 Rh4AG055800 Rh4BG053200 Rh4BG054100 Rh4BG054500 Rh4CG060400 Rh6BG426700 Rh7AG370000 Rh7CG388900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	328
Acc16I	TGCGCA	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	264
AccBSI	CCGCTC	1 cut(s)	368
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	3 cut(s)	113, 317, 440
AciI	CCGC	8 cut(s)	52, 150, 315, 366, 397, 400, 485, 500
AclWI	GGATC	1 cut(s)	491
AcoI	YGGCCR	1 cut(s)	312
AcuI	CTGAAG	1 cut(s)	411
AcvI	CACGTG	1 cut(s)	373
AcyI	GRCGYC	3 cut(s)	41, 153, 323
AfaI	GTAC	1 cut(s)	473
AluBI	AGCT	2 cut(s)	245, 254
AluI	AGCT	2 cut(s)	245, 254
Alw21I	GWGCWC	1 cut(s)	256
AlwI	GGATC	1 cut(s)	491
Ama87I	CYCGRG	2 cut(s)	217, 249
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	3 cut(s)	68, 442, 445
AspLEI	GCGC	4 cut(s)	115, 319, 378, 442
AspS9I	GGNCC	2 cut(s)	136, 281
AsuC2I	CCSGG	2 cut(s)	218, 219
AsuHPI	GGTGA	1 cut(s)	294
AvaI	CYCGRG	2 cut(s)	217, 249
AvaII	GGWCC	2 cut(s)	136, 281
BanI	GGYRCC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	256
BbrPI	CACGTG	1 cut(s)	373
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	3 cut(s)	80, 454, 457
BccI	CCATC	2 cut(s)	81, 524
BceAI	ACGGC	2 cut(s)	54, 327
BciVI	GTATCC	1 cut(s)	40
BcnI	CCSGG	2 cut(s)	218, 219
BfaI	CTAG	2 cut(s)	140, 526
BfuI	GTATCC	1 cut(s)	40
BisI	GCNGC	7 cut(s)	69, 151, 315, 400, 443, 446, 486
BlsI	GCNGC	7 cut(s)	70, 152, 316, 401, 444, 447, 487
BmcAI	AGTACT	1 cut(s)	473
Bme1390I	CCNGG	2 cut(s)	218, 219
Bme18I	GGWCC	2 cut(s)	136, 281
BmeT110I	CYCGRG	2 cut(s)	217, 249
BmgT120I	GGNCC	2 cut(s)	136, 281
BmiI	GGNNCC	2 cut(s)	16, 266
BmrFI	CCNGG	2 cut(s)	218, 219
BmsI	GCATC	1 cut(s)	412
BpmI	CTGGAG	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	2 cut(s)	218, 219
BsaAI	YACGTR	1 cut(s)	373
BsaHI	GRCGYC	3 cut(s)	41, 153, 323
BsaJI	CCNNGG	3 cut(s)	60, 217, 234
BsaWI	WCCGGW	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bse1I	ACTGG	3 cut(s)	88, 185, 283
Bse3DI	GCAATG	1 cut(s)	194
BseDI	CCNNGG	3 cut(s)	60, 217, 234
BseMI	GCAATG	1 cut(s)	194
BseNI	ACTGG	3 cut(s)	88, 185, 283
BseRI	GAGGAG	1 cut(s)	237
BseX3I	CGGCCG	1 cut(s)	312
BseXI	GCAGC	3 cut(s)	80, 454, 457
Bsh1236I	CGCG	3 cut(s)	113, 317, 440
Bsh1285I	CGRYCG	1 cut(s)	315
BshFI	GGCC	1 cut(s)	314
BshNI	GGYRCC	1 cut(s)	264
BsiEI	CGRYCG	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	256
BsiHKCI	CYCGRG	2 cut(s)	217, 249
BsiSI	CCGG	3 cut(s)	176, 218, 271
BslFI	GGGAC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	314
BsoBI	CYCGRG	2 cut(s)	217, 249
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	496
BspACI	CCGC	8 cut(s)	52, 150, 315, 366, 397, 400, 485, 500
BspANI	GGCC	1 cut(s)	314
BspFNI	CGCG	3 cut(s)	113, 317, 440
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	2 cut(s)	16, 266
BspPI	GGATC	1 cut(s)	491
BspT107I	GGYRCC	1 cut(s)	264
BsrBI	CCGCTC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	194
BsrI	ACTGG	3 cut(s)	88, 185, 283
BssECI	CCNNGG	3 cut(s)	60, 217, 234
BssMI	GATC	1 cut(s)	496
BssNI	GRCGYC	3 cut(s)	41, 153, 323
BssT1I	CCWWGG	2 cut(s)	60, 234
Bst4CI	ACNGT	2 cut(s)	8, 494
BstACI	GRCGYC	3 cut(s)	41, 153, 323
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	2 cut(s)	380, 397
BstDEI	CTNAG	1 cut(s)	468
BstFNI	CGCG	3 cut(s)	113, 317, 440
BstHHI	GCGC	4 cut(s)	115, 319, 378, 442
BstKTI	GATC	1 cut(s)	499
BstMBI	GATC	1 cut(s)	496
BstMCI	CGRYCG	1 cut(s)	315
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 156, 251, 271, 521
BstSCI	CCNGG	2 cut(s)	216, 217
BstUI	CGCG	3 cut(s)	113, 317, 440
BstV1I	GCAGC	3 cut(s)	80, 454, 457
BstZI	CGGCCG	1 cut(s)	312
BsuI	GTATCC	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	314
Cac8I	GCNNGC	2 cut(s)	380, 397
CciI	TCATGA	1 cut(s)	405
CfoI	GCGC	4 cut(s)	115, 319, 378, 442
Cfr13I	GGNCC	2 cut(s)	136, 281
Cfr9I	CCCGGG	1 cut(s)	217
CseI	GACGC	5 cut(s)	30, 74, 119, 142, 331
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	1 cut(s)	406
CviJI	RGCY	9 cut(s)	15, 71, 216, 231, 245, 254, 314, 395, 524
CviKI_1	RGCY	9 cut(s)	15, 71, 216, 231, 245, 254, 314, 395, 524
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
DrdI	GACNNNNNNGTC	1 cut(s)	328
DseDI	GACNNNNNNGTC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	312
EagI	CGGCCG	1 cut(s)	312
Ecl136II	GAGCTC	1 cut(s)	254
EclXI	CGGCCG	1 cut(s)	312
Eco130I	CCWWGG	2 cut(s)	60, 234
Eco24I	GRGCYC	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	136, 281
Eco52I	CGGCCG	1 cut(s)	312
Eco53kI	GAGCTC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	411
Eco72I	CACGTG	1 cut(s)	373
Eco88I	CYCGRG	2 cut(s)	217, 249
EcoICRI	GAGCTC	1 cut(s)	254
EcoO109I	RGGNCCY	1 cut(s)	136
EcoT14I	CCWWGG	2 cut(s)	60, 234
EcoT38I	GRGCYC	1 cut(s)	256
ErhI	CCWWGG	2 cut(s)	60, 234
FaeI	CATG	1 cut(s)	409
FaiI	YATR	4 cut(s)	166, 261, 407, 504
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	1 cut(s)	405
FauI	CCCGC	2 cut(s)	59, 404
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	7 cut(s)	69, 151, 315, 400, 443, 446, 486
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	7 cut(s)	69, 151, 315, 400, 443, 446, 486
FspAI	RTGCGCAY	1 cut(s)	377
FspBI	CTAG	2 cut(s)	140, 526
FspI	TGCGCA	1 cut(s)	377
GlaI	GCGC	4 cut(s)	114, 318, 377, 441
GluI	GCNGC	7 cut(s)	69, 151, 315, 400, 443, 446, 486
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	3 cut(s)	176, 218, 271
HgaI	GACGC	5 cut(s)	30, 74, 119, 142, 331
HhaI	GCGC	4 cut(s)	115, 319, 378, 442
Hin1I	GRCGYC	3 cut(s)	41, 153, 323
Hin1II	CATG	1 cut(s)	409
Hin6I	GCGC	4 cut(s)	113, 317, 376, 440
HinP1I	GCGC	4 cut(s)	113, 317, 376, 440
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	5 cut(s)	161, 179, 286, 291, 362
HpaII	CCGG	3 cut(s)	176, 218, 271
HphI	GGTGA	1 cut(s)	294
Hpy166II	GTNNAC	2 cut(s)	25, 130
Hpy188I	TCNGA	2 cut(s)	46, 192
Hpy188III	TCNNGA	1 cut(s)	406
Hpy8I	GTNNAC	2 cut(s)	25, 130
Hpy99I	CGWCG	5 cut(s)	46, 113, 158, 209, 325
HpyAV	CCTTC	2 cut(s)	203, 394
HpyCH4III	ACNGT	2 cut(s)	8, 494
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 156, 251, 271, 521
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	1 cut(s)	372
Hsp92I	GRCGYC	3 cut(s)	41, 153, 323
Hsp92II	CATG	1 cut(s)	409
HspAI	GCGC	4 cut(s)	113, 317, 376, 440
Kzo9I	GATC	1 cut(s)	496
LmnI	GCTCC	2 cut(s)	20, 250
LpnPI	CCDG	8 cut(s)	101, 189, 198, 231, 264, 284, 402, 467
Lsp1109I	GCAGC	3 cut(s)	80, 454, 457
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	2 cut(s)	140, 526
MaeII	ACGT	1 cut(s)	372
MalI	GATC	1 cut(s)	498
MbiI	CCGCTC	1 cut(s)	368
MboI	GATC	1 cut(s)	496
MfeI	CAATTG	1 cut(s)	454
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	2 cut(s)	454, 509
MlyI	GAGTC	3 cut(s)	170, 280, 356
MmeI	TCCRAC	1 cut(s)	24
MspI	CCGG	3 cut(s)	176, 218, 271
MspR9I	CCNGG	2 cut(s)	218, 219
MunI	CAATTG	1 cut(s)	454
MvnI	CGCG	3 cut(s)	113, 317, 440
MwoI	GCNNNNNNNGC	5 cut(s)	65, 156, 251, 271, 521
NciI	CCSGG	2 cut(s)	218, 219
NdeII	GATC	1 cut(s)	496
NlaIII	CATG	1 cut(s)	409
NlaIV	GGNNCC	2 cut(s)	16, 266
NsbI	TGCGCA	1 cut(s)	377
PaeR7I	CTCGAG	1 cut(s)	249
PagI	TCATGA	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	179, 291
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	7 cut(s)	70, 152, 316, 401, 444, 447, 487
PleI	GAGTC	3 cut(s)	169, 280, 356
PmaCI	CACGTG	1 cut(s)	373
PmlI	CACGTG	1 cut(s)	373
PpsI	GAGTC	3 cut(s)	169, 280, 356
Ppu21I	YACGTR	1 cut(s)	373
PpuMI	RGGWCCY	1 cut(s)	136
Psp124BI	GAGCTC	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	136
PspCI	CACGTG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	16, 266
PspPI	GGNCC	2 cut(s)	136, 281
PspPPI	RGGWCCY	1 cut(s)	136
PspXI	VCTCGAGB	1 cut(s)	249
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SacI	GAGCTC	1 cut(s)	256
SatI	GCNGC	7 cut(s)	69, 151, 315, 400, 443, 446, 486
Sau3AI	GATC	1 cut(s)	496
Sau96I	GGNCC	2 cut(s)	136, 281
ScaI	AGTACT	1 cut(s)	473
SchI	GAGTC	3 cut(s)	170, 280, 356
ScrFI	CCNGG	2 cut(s)	218, 219
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	6 cut(s)	141, 247, 256, 270, 302, 375
SfaNI	GCATC	1 cut(s)	412
Sfr274I	CTCGAG	1 cut(s)	249
SinI	GGWCC	2 cut(s)	136, 281
SlaI	CTCGAG	1 cut(s)	249
SmaI	CCCGGG	1 cut(s)	219
SmlI	CTYRAG	2 cut(s)	95, 249
SmoI	CTYRAG	2 cut(s)	95, 249
Sse9I	AATT	2 cut(s)	454, 509
SsiI	CCGC	8 cut(s)	52, 150, 315, 366, 397, 400, 485, 500
SspMI	CTAG	2 cut(s)	140, 526
SstI	GAGCTC	1 cut(s)	256
StyD4I	CCNGG	2 cut(s)	216, 217
StyI	CCWWGG	2 cut(s)	60, 234
TaaI	ACNGT	2 cut(s)	8, 494
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	5 cut(s)	207, 250, 289, 360, 519
TaqII	GACCGA	1 cut(s)	298
TasI	AATT	2 cut(s)	454, 509
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	4 cut(s)	153, 317, 402, 488
TfiI	GAWTC	2 cut(s)	179, 291
TseI	GCWGC	3 cut(s)	68, 442, 445
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	1 cut(s)	193
TspMI	CCCGGG	1 cut(s)	217
Tth111I	GACNNNGTC	1 cut(s)	140
VpaK11BI	GGWCC	2 cut(s)	136, 281
XhoI	CTCGAG	1 cut(s)	249
XmaI	CCCGGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	24
XspI	CTAG	2 cut(s)	140, 526
ZrmI	AGTACT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.