Rmu_sc0000565.1_g000007

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000565.1
OG0005291
Physical Location & Seq
Reverse (-)
41963 .. 42670
708 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 708 bp
atgcagtttctgaaagaggctctcatctcccacgttcaatccataaaatctggtttaacactgggcattttcacctccaaccaactcatctacctgtacccaagacatggcctcattcaagacgcccagaagctgttcgacgaaatgccccaccggagcgtctactcttggaacgccataatctccacccacatcagatcacgcaacttggaacgagcccggcagctattcgacactgcttctttcagagatttggtcacttacaactctatgctctctggttacgcaagcacagaaggttacgaggattgtgcgattgggttgtttgccgaaatgcagtcgctggatgatcggattagagttgatgaggttactctaactaccatgcttaacttgtgtgccaagttagaggtggtttgttatggaaagcagttgcattcgtgtatggtgagaactgccaatgatctgagtgggtttgcggtgagctctttaattgatatgtactctaagtgcgggtgttttcgtgatgcttggcgcgtgtttagtggatatagagggatggttgactcggtttcgaagaatgcaatggtggcagcttgttgtggagaagggaaattggacatggcagttaatctcttttggaaaggactggagctaaacgatactgtgtcttggaacactaatttcagggtattttcactcttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

235

Amino Acids

26.61

Weight (kDa)

6.51

Isoelectric Point (pI)

25.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 84 - 135 5e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 107
AccI GTMKAC 1 cut(s) 162
AccII CGCG 1 cut(s) 537
AciI CCGC 2 cut(s) 479, 513
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 2 cut(s) 98, 503
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 2 cut(s) 38, 119
AluBI AGCT 5 cut(s) 133, 226, 486, 596, 655
AluI AGCT 5 cut(s) 133, 226, 486, 596, 655
Alw21I GWGCWC 1 cut(s) 488
AlwNI CAGNNNCTG 3 cut(s) 10, 133, 343
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 2 cut(s) 223, 593
Asp700I GAANNNNTTC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 537
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 3 cut(s) 64, 460, 493
AsuII TTCGAA 1 cut(s) 575
BanII GRGCYC 2 cut(s) 220, 488
Bbv12I GWGCWC 1 cut(s) 488
BbvI GCAGC 2 cut(s) 235, 605
BccI CCATC 1 cut(s) 553
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BcnI CCSGG 1 cut(s) 220
BisI GCNGC 2 cut(s) 224, 594
BlsI GCNGC 2 cut(s) 225, 595
Bme1390I CCNGG 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 220
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 1 cut(s) 517
BmuI ACTGGG 1 cut(s) 71
BpmI CTGGAG 1 cut(s) 671
Bpu14I TTCGAA 1 cut(s) 575
BpuMI CCSGG 1 cut(s) 220
BsaHI GRCGYC 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 2 cut(s) 66, 654
Bse3DI GCAATG 1 cut(s) 591
BseGI GGATG 2 cut(s) 352, 564
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMI GCAATG 1 cut(s) 591
BseMII CTCAG 1 cut(s) 458
BseNI ACTGG 2 cut(s) 66, 654
BseXI GCAGC 2 cut(s) 235, 605
Bsh1236I CGCG 1 cut(s) 537
BshFI GGCC 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 488
BsiSI CCGG 2 cut(s) 154, 220
BslI CCNNNNNNNGG 1 cut(s) 107
BsmI GAATGC 2 cut(s) 436, 586
BsnI GGCC 1 cut(s) 111
Bsp119I TTCGAA 1 cut(s) 575
Bsp1286I GDGCHC 2 cut(s) 220, 488
Bsp143I GATC 3 cut(s) 197, 349, 463
BspACI CCGC 2 cut(s) 479, 513
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 459
BspFNI CGCG 1 cut(s) 537
BspT104I TTCGAA 1 cut(s) 575
BsrDI GCAATG 1 cut(s) 591
BsrI ACTGG 2 cut(s) 66, 654
BssMI GATC 3 cut(s) 197, 349, 463
BssNI GRCGYC 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 667
BstACI GRCGYC 1 cut(s) 123
BstBI TTCGAA 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 467, 507
BstF5I GGATG 2 cut(s) 352, 564
BstFNI CGCG 1 cut(s) 537
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 3 cut(s) 200, 352, 466
BstMBI GATC 3 cut(s) 197, 349, 463
BstMWI GCNNNNNNNGC 1 cut(s) 590
BstSCI CCNGG 1 cut(s) 218
BstUI CGCG 1 cut(s) 537
BstV1I GCAGC 2 cut(s) 235, 605
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 2 cut(s) 352, 564
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 2 cut(s) 59, 234
Cac8I GCNNGC 1 cut(s) 289
CaiI CAGNNNCTG 3 cut(s) 10, 133, 343
CfoI GCGC 1 cut(s) 537
CseI GACGC 2 cut(s) 131, 148
Csp6I GTAC 2 cut(s) 97, 502
CviAII CATG 3 cut(s) 107, 385, 622
CviJI RGCY 8 cut(s) 20, 111, 133, 218, 226, 486, 596, 655
CviKI_1 RGCY 8 cut(s) 20, 111, 133, 218, 226, 486, 596, 655
CviQI GTAC 2 cut(s) 97, 502
DdeI CTNAG 2 cut(s) 467, 507
DpnI GATC 3 cut(s) 199, 351, 465
DpnII GATC 3 cut(s) 197, 349, 463
Ecl136II GAGCTC 1 cut(s) 486
Eco24I GRGCYC 2 cut(s) 220, 488
Eco53kI GAGCTC 1 cut(s) 486
EcoICRI GAGCTC 1 cut(s) 486
EcoT38I GRGCYC 2 cut(s) 220, 488
FaeI CATG 3 cut(s) 110, 388, 625
FatI CATG 3 cut(s) 106, 384, 621
FauI CCCGC 1 cut(s) 506
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 224, 594
FokI GGATG 2 cut(s) 359, 571
FriOI GRGCYC 2 cut(s) 220, 488
Fsp4HI GCNGC 2 cut(s) 224, 594
GlaI GCGC 1 cut(s) 536
GluI GCNGC 2 cut(s) 224, 594
GsuI CTGGAG 1 cut(s) 671
HaeIII GGCC 1 cut(s) 111
HapII CCGG 2 cut(s) 154, 220
HgaI GACGC 2 cut(s) 131, 148
HhaI GCGC 1 cut(s) 537
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 3 cut(s) 110, 388, 625
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 1 cut(s) 566
HpaII CCGG 2 cut(s) 154, 220
HphI GGTGA 3 cut(s) 64, 460, 493
Hpy166II GTNNAC 2 cut(s) 163, 565
Hpy188I TCNGA 5 cut(s) 12, 197, 248, 354, 468
Hpy188III TCNNGA 2 cut(s) 119, 524
Hpy8I GTNNAC 2 cut(s) 163, 565
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 290, 602
HpyCH4III ACNGT 1 cut(s) 667
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 4 cut(s) 4, 337, 436, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 590
HpyF3I CTNAG 2 cut(s) 467, 507
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 3 cut(s) 110, 388, 625
HspAI GCGC 1 cut(s) 535
Kzo9I GATC 3 cut(s) 197, 349, 463
LmnI GCTCC 2 cut(s) 156, 652
Lsp1109I GCAGC 2 cut(s) 235, 605
LweI GCATC 1 cut(s) 517
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 4 cut(s) 256, 281, 299, 370
MalI GATC 3 cut(s) 199, 351, 465
MboI GATC 3 cut(s) 197, 349, 463
MboII GAAGA 1 cut(s) 589
MhlI GDGCHC 2 cut(s) 220, 488
MluCI AATT 3 cut(s) 492, 614, 682
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 7 cut(s) 10, 85, 122, 298, 361, 403, 548
MroXI GAANNNNTTC 1 cut(s) 134
MseI TTAA 4 cut(s) 56, 390, 491, 630
MspI CCGG 2 cut(s) 154, 220
MspR9I CCNGG 1 cut(s) 220
Mva1269I GAATGC 2 cut(s) 436, 586
MvnI CGCG 1 cut(s) 537
MwoI GCNNNNNNNGC 1 cut(s) 590
NciI CCSGG 1 cut(s) 220
NdeII GATC 3 cut(s) 197, 349, 463
NlaIII CATG 3 cut(s) 110, 388, 625
NmuCI GTSAC 1 cut(s) 256
NspV TTCGAA 1 cut(s) 575
PctI GAATGC 2 cut(s) 436, 586
PdmI GAANNNNTTC 1 cut(s) 134
PflMI CCANNNNNTGG 1 cut(s) 107
PkrI GCNGC 2 cut(s) 225, 595
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 488
PstNI CAGNNNCTG 3 cut(s) 10, 133, 343
RsaI GTAC 2 cut(s) 98, 503
RsaNI GTAC 2 cut(s) 97, 502
SacI GAGCTC 1 cut(s) 488
SaqAI TTAA 4 cut(s) 56, 390, 491, 630
SatI GCNGC 2 cut(s) 224, 594
Sau3AI GATC 3 cut(s) 197, 349, 463
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 1 cut(s) 220
SduI GDGCHC 2 cut(s) 220, 488
SfaNI GCATC 1 cut(s) 517
SfuI TTCGAA 1 cut(s) 575
Sse9I AATT 3 cut(s) 492, 614, 682
SsiI CCGC 2 cut(s) 479, 513
SstI GAGCTC 1 cut(s) 488
StyD4I CCNGG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 667
TaiI ACGT 1 cut(s) 36
TaqI TCGA 3 cut(s) 138, 231, 575
TasI AATT 3 cut(s) 492, 614, 682
TatI WGTACW 1 cut(s) 501
Tru1I TTAA 4 cut(s) 56, 390, 491, 630
Tru9I TTAA 4 cut(s) 56, 390, 491, 630
TscAI CASTG 2 cut(s) 66, 241
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 2 cut(s) 223, 593
Tsp45I GTSAC 1 cut(s) 256
TspRI CASTG 2 cut(s) 66, 241
Van91I CCANNNNNTGG 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XmiI GTMKAC 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.