Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000613.1

Orthogroup ID

OG0011627

Physical Location & Seq

Genomic Coordinates Reverse (-)

130380 .. 135262

Gene Structure 4883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atgtgcacggcgtatgtggtgaaatctgagccgtccgatactagccatgaccatcgctgccatagacccaaaagccgtgaaatcagacttggtcctcatcctcgactatggctcccatacacccacctcatcactctccgcattcgatccctctccgtcttctccctcaccatctcctgcaccagccccctcaaggccatcaccgacctcatccccagcgttgccatcctctccggcagtccccactccgtctgcaccgacgactcccccagcttccccgccgggttcaccgagtgggccgaggtccatggcttcttcgtcctcggaatctgctatggcttgcagctgattgtgcagaggcttggtggggtggttagggttggggagaagcaggaagccagcagggagtggtggccgccattgaaagccctgaaaggaggttctatgggctgcagtaccaccctgagagccaatgctttgctcaccttcgcagtcacaattctcgccctcatgtgcgccatggcctccatgtctgacagtttcaacaccccatctcccacttctcaagtccaggtgctgaatatcaattggtttcagaagcaaccaaatgggaacgacgaggtaaattttggtaatattgatgccattgttgaatccggtgaagaagacttggtcagtactcagcttcatgaaagtttattttcacgctacacattcactccattcgtaggaagtcatgctgcagttatagtagaaattttgacaactacggcttgttgcagtcttgggcttagcttgaatactagtcattttagtttgaagaaaccccttgtaaactcattaccaactggggctttggtggaaggcttccctatgtttggttccaaaagcatcagcattattcgaaagggaagtttcagcatatgcagtgaaaaattctatgcaaactctgaaggcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003921 GO:0003922 GO:0006139 GO:0006163 GO:0006164 GO:0006177 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046037 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

GATase GMP_synt_C NAD_synthase

Protein Analysis

320

Amino Acids

34.86

Weight (kDa)

7.6

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	40 - 132	1.1e-06	Glutamine amidotransferase class-I
SPC22	PF04573	152 - 209	5.6e-06	Signal peptidase subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011627)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009658 RLG00000012960
rosa_multiflora	Rmu_sc0000613.1_g000035
rosa_roxburghii	Rroxscaffold_3G00251250
rosa_rugosa	Rorug02G0653900
rosa_samantha	Rh1BG296900 Rh1CG313100 Rh2AG328500 Rh2AG504700 Rh3BG308200 Rh4BG209000 Rh4BG262000 Rh4DG045400 Rh4DG124300 Rh5CG367300 Rh5DG414400 Rh6CG017900 Rh6CG023700 Rh6DG018900 Rh7DG292100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	139, 279, 416
AclWI	GGATC	1 cut(s)	141
AcoI	YGGCCR	1 cut(s)	413
AcsI	RAATTY	3 cut(s)	625, 756, 935
AdeI	CACNNNGTG	1 cut(s)	294
AfaI	GTAC	2 cut(s)	457, 679
AfiI	CCNNNNNNNGG	3 cut(s)	193, 728, 878
AgsI	TTSAA	5 cut(s)	424, 544, 653, 799, 820
AhlI	ACTAGT	1 cut(s)	803
AjnI	CCWGG	1 cut(s)	570
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	4 cut(s)	273, 346, 685, 795
AluI	AGCT	4 cut(s)	273, 346, 685, 795
Alw21I	GWGCWC	1 cut(s)	8
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	141
AlwNI	CAGNNNCTG	1 cut(s)	577
AoxI	GGCC	4 cut(s)	195, 297, 413, 522
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	4 cut(s)	57, 343, 450, 740
ApoI	RAATTY	3 cut(s)	625, 756, 935
AspLEI	GCGC	1 cut(s)	518
AspS9I	GGNCC	3 cut(s)	92, 297, 304
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	6 cut(s)	31, 160, 193, 280, 475, 671
AsuII	TTCGAA	1 cut(s)	904
AvaII	GGWCC	2 cut(s)	92, 304
BaeGI	GKGCMC	1 cut(s)	8
BbsI	GAAGAC	2 cut(s)	151, 672
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	4 cut(s)	44, 355, 437, 727
BccI	CCATC	5 cut(s)	60, 179, 206, 233, 559
BceAI	ACGGC	4 cut(s)	16, 24, 60, 786
BciT130I	CCWGG	1 cut(s)	572
BcnI	CCSGG	1 cut(s)	283
BcuI	ACTAGT	1 cut(s)	803
BfaI	CTAG	2 cut(s)	42, 804
BfmI	CTRYAG	2 cut(s)	451, 741
BisI	GCNGC	5 cut(s)	58, 344, 416, 451, 741
BlpI	GCTNAGC	1 cut(s)	791
BlsI	GCNGC	5 cut(s)	59, 345, 417, 452, 742
BmcAI	AGTACT	1 cut(s)	679
Bme1390I	CCNGG	2 cut(s)	283, 572
Bme18I	GGWCC	2 cut(s)	92, 304
BmgT120I	GGNCC	3 cut(s)	92, 297, 304
BmiI	GGNNCC	2 cut(s)	113, 883
BmrFI	CCNGG	2 cut(s)	283, 572
BmrI	ACTGGG	1 cut(s)	858
BmsI	GCATC	2 cut(s)	631, 900
BmuI	ACTGGG	1 cut(s)	858
BpiI	GAAGAC	2 cut(s)	151, 672
Bpu1102I	GCTNAGC	1 cut(s)	791
Bpu14I	TTCGAA	1 cut(s)	904
BpuEI	CTTGAG	2 cut(s)	176, 549
BpuMI	CCSGG	1 cut(s)	283
BsaJI	CCNNGG	4 cut(s)	300, 307, 322, 519
BsaWI	WCCGGW	1 cut(s)	656
BsaXI	ACNNNNNCTCC	6 cut(s)	96, 126, 538, 568, 703, 733
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 728, 878
Bse1I	ACTGG	1 cut(s)	853
BseBI	CCWGG	1 cut(s)	572
BseDI	CCNNGG	4 cut(s)	300, 307, 322, 519
BseGI	GGATG	3 cut(s)	97, 210, 225
BseLI	CCNNNNNNNGG	3 cut(s)	193, 728, 878
BseMII	CTCAG	3 cut(s)	18, 455, 695
BseNI	ACTGG	1 cut(s)	853
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	4 cut(s)	44, 355, 437, 727
BseYI	CCCAGC	2 cut(s)	215, 269
BsgI	GTGCAG	3 cut(s)	163, 238, 374
BshFI	GGCC	4 cut(s)	197, 299, 415, 524
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	3 cut(s)	234, 282, 657
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	3 cut(s)	193, 728, 878
BsmFI	GGGAC	1 cut(s)	225
BsmI	GAATGC	1 cut(s)	141
BsnI	GGCC	4 cut(s)	197, 299, 415, 524
Bsp119I	TTCGAA	1 cut(s)	904
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	146
Bsp1720I	GCTNAGC	1 cut(s)	791
Bsp19I	CCATGG	2 cut(s)	307, 519
BspACI	CCGC	3 cut(s)	139, 279, 416
BspANI	GGCC	4 cut(s)	197, 299, 415, 524
BspCNI	CTCAG	3 cut(s)	19, 456, 694
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	2 cut(s)	113, 883
BspMAI	CTGCAG	2 cut(s)	455, 745
BspPI	GGATC	1 cut(s)	141
BspT104I	TTCGAA	1 cut(s)	904
BsrI	ACTGG	1 cut(s)	853
BssECI	CCNNGG	4 cut(s)	300, 307, 322, 519
BssMI	GATC	1 cut(s)	146
BssT1I	CCWWGG	2 cut(s)	307, 519
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	1 cut(s)	539
BstBI	TTCGAA	1 cut(s)	904
BstC8I	GCNNGC	2 cut(s)	341, 400
BstDEI	CTNAG	4 cut(s)	27, 464, 681, 791
BstDSI	CCRYGG	2 cut(s)	307, 519
BstF5I	GGATG	3 cut(s)	97, 210, 225
BstHHI	GCGC	1 cut(s)	518
BstKTI	GATC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	1 cut(s)	572
BstSCI	CCNGG	2 cut(s)	281, 570
BstSFI	CTRYAG	2 cut(s)	451, 741
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	4 cut(s)	44, 355, 437, 727
BstV2I	GAAGAC	2 cut(s)	151, 672
BsuRI	GGCC	4 cut(s)	197, 299, 415, 524
BtgI	CCRYGG	2 cut(s)	307, 519
BtgZI	GCGATG	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	97, 210, 225
BtsI	GCAGTG	1 cut(s)	934
BtsIMutI	CAGTG	1 cut(s)	934
Cac8I	GCNNGC	2 cut(s)	341, 400
CaiI	CAGNNNCTG	1 cut(s)	577
CciI	TCATGA	1 cut(s)	688
CfoI	GCGC	1 cut(s)	518
Cfr13I	GGNCC	3 cut(s)	92, 297, 304
Csp6I	GTAC	2 cut(s)	456, 678
CviAII	CATG	7 cut(s)	47, 308, 511, 520, 529, 689, 737
CviQI	GTAC	2 cut(s)	456, 678
DdeI	CTNAG	4 cut(s)	27, 464, 681, 791
DpnI	GATC	1 cut(s)	148
DpnII	GATC	1 cut(s)	146
DraIII	CACNNNGTG	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	413
Eco130I	CCWWGG	2 cut(s)	307, 519
Eco47I	GGWCC	2 cut(s)	92, 304
EcoRII	CCWGG	1 cut(s)	570
EcoT14I	CCWWGG	2 cut(s)	307, 519
ErhI	CCWWGG	2 cut(s)	307, 519
FaeI	CATG	7 cut(s)	50, 311, 514, 523, 532, 692, 740
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	7 cut(s)	46, 307, 510, 519, 528, 688, 736
FauI	CCCGC	1 cut(s)	286
FauNDI	CATATG	1 cut(s)	923
Fnu4HI	GCNGC	5 cut(s)	58, 344, 416, 451, 741
FokI	GGATG	3 cut(s)	84, 197, 212
Fsp4HI	GCNGC	5 cut(s)	58, 344, 416, 451, 741
FspBI	CTAG	2 cut(s)	42, 804
GlaI	GCGC	1 cut(s)	517
GluI	GCNGC	5 cut(s)	58, 344, 416, 451, 741
GsaI	CCCAGC	2 cut(s)	219, 273
HaeIII	GGCC	4 cut(s)	197, 299, 415, 524
HapII	CCGG	3 cut(s)	234, 282, 657
HhaI	GCGC	1 cut(s)	518
Hin1II	CATG	7 cut(s)	50, 311, 514, 523, 532, 692, 740
Hin6I	GCGC	1 cut(s)	516
HinP1I	GCGC	1 cut(s)	516
HinfI	GANTC	3 cut(s)	263, 327, 653
HpaII	CCGG	3 cut(s)	234, 282, 657
HphI	GGTGA	6 cut(s)	31, 160, 193, 280, 475, 671
Hpy166II	GTNNAC	3 cut(s)	6, 288, 835
Hpy188I	TCNGA	7 cut(s)	28, 37, 86, 326, 535, 597, 952
Hpy188III	TCNNGA	1 cut(s)	689
Hpy8I	GTNNAC	3 cut(s)	6, 288, 835
Hpy99I	CGWCG	2 cut(s)	263, 620
HpyAV	CCTTC	3 cut(s)	496, 857, 947
HpyCH4III	ACNGT	1 cut(s)	539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	4 cut(s)	27, 464, 681, 791
Hsp92II	CATG	7 cut(s)	50, 311, 514, 523, 532, 692, 740
HspAI	GCGC	1 cut(s)	516
Kzo9I	GATC	1 cut(s)	146
LmnI	GCTCC	1 cut(s)	117
Lsp1109I	GCAGC	4 cut(s)	44, 355, 437, 727
LweI	GCATC	2 cut(s)	631, 900
MaeI	CTAG	2 cut(s)	42, 804
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	1 cut(s)	148
MboI	GATC	1 cut(s)	146
MboII	GAAGA	5 cut(s)	151, 307, 674, 677, 832
MfeI	CAATTG	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	5 cut(s)	498, 586, 625, 756, 935
MlyI	GAGTC	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	346
MspI	CCGG	3 cut(s)	234, 282, 657
MspR9I	CCNGG	2 cut(s)	283, 572
MunI	CAATTG	1 cut(s)	586
Mva1269I	GAATGC	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	572
MwoI	GCNNNNNNNGC	1 cut(s)	352
NciI	CCSGG	1 cut(s)	283
NcoI	CCATGG	2 cut(s)	307, 519
NdeI	CATATG	1 cut(s)	923
NdeII	GATC	1 cut(s)	146
NlaIII	CATG	7 cut(s)	50, 311, 514, 523, 532, 692, 740
NlaIV	GGNNCC	2 cut(s)	113, 883
NmeAIII	GCCGAG	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	493
NspV	TTCGAA	1 cut(s)	904
PagI	TCATGA	1 cut(s)	688
PctI	GAATGC	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	327, 653
PflFI	GACNNNGTC	2 cut(s)	90, 671
PkrI	GCNGC	5 cut(s)	59, 345, 417, 452, 742
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	570
PspFI	CCCAGC	2 cut(s)	215, 269
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	2 cut(s)	113, 883
PspPI	GGNCC	3 cut(s)	92, 297, 304
PstI	CTGCAG	2 cut(s)	455, 745
PstNI	CAGNNNCTG	1 cut(s)	577
PsyI	GACNNNGTC	2 cut(s)	90, 671
PvuII	CAGCTG	1 cut(s)	346
RsaI	GTAC	2 cut(s)	457, 679
RsaNI	GTAC	2 cut(s)	456, 678
SatI	GCNGC	5 cut(s)	58, 344, 416, 451, 741
Sau3AI	GATC	1 cut(s)	146
Sau96I	GGNCC	3 cut(s)	92, 297, 304
ScaI	AGTACT	1 cut(s)	679
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	283, 572
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	631, 900
SfcI	CTRYAG	2 cut(s)	451, 741
SfuI	TTCGAA	1 cut(s)	904
SinI	GGWCC	2 cut(s)	92, 304
SmlI	CTYRAG	2 cut(s)	191, 564
SmoI	CTYRAG	2 cut(s)	191, 564
SpeI	ACTAGT	1 cut(s)	803
Sse9I	AATT	5 cut(s)	498, 586, 625, 756, 935
SsiI	CCGC	3 cut(s)	139, 279, 416
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	2 cut(s)	42, 804
StyD4I	CCNGG	2 cut(s)	281, 570
StyI	CCWWGG	2 cut(s)	307, 519
TaaI	ACNGT	1 cut(s)	539
TaqI	TCGA	3 cut(s)	103, 145, 904
TasI	AATT	5 cut(s)	498, 586, 625, 756, 935
TatI	WGTACW	1 cut(s)	677
TauI	GCSGC	1 cut(s)	418
TfiI	GAWTC	2 cut(s)	327, 653
TscAI	CASTG	1 cut(s)	934
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	4 cut(s)	57, 343, 450, 740
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	2 cut(s)	677, 705
TspGWI	ACGGA	2 cut(s)	145, 238
TspRI	CASTG	1 cut(s)	934
Tth111I	GACNNNGTC	2 cut(s)	90, 671
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	2 cut(s)	92, 304
XapI	RAATTY	3 cut(s)	625, 756, 935
XspI	CTAG	2 cut(s)	42, 804
ZrmI	AGTACT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.