Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000708.1

Orthogroup ID

OG0007687

Physical Location & Seq

Genomic Coordinates Reverse (-)

99422 .. 101699

Gene Structure 2278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgaaatccgacgtcacccaaaaacacaattttgagtttacagaacccgattacatatcaaaaacttcattcgagcatatcaacaacttcacaaccattatcatgacaaccaagcttccagctttcgtctctgccttcaatcccaatcaaacaaccaaacccgaatcgtgttctctacctctgaccacgactttgaagcccacaagtctacagaatctatggctcggaaccaacagtctcggagtcagagcccaactgccaaagctccgacctttctcttccacaatctgcctcagcctcccgaccgcaatcaaggagagagtttcgtccaatgaggaagtgcccaaatggtctagcagggctataaagtcatttgccatgggggaattggaagccaggaagctcaagtacccaaccactggggaaggctgcttgtgcagaaccactttggcttcaaaatttttgcgggcaaatggacttacagtgttcaaggtgcgtgaagaaaccatcaagttacttgggaaagctgatatgtactttttcagtcctgagcatcctgcattgactgacgaagctcaaagagtgctcgactgggccgttgataagaaaataaaatctggtggtagtggcgaaattacaacatctcatctgcttcttggcatttggtatgaagtggattcaccgggtcacaagataatggcctcccttggcttcaatgaagagaaagtgaaagagctggagtctttaatttctgatggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019899 GO:0019900 GO:0019901 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clp_N

Protein Analysis

253

Amino Acids

28.18

Weight (kDa)

8.58

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	149 - 233	1.2e-06	Clp repeat (R) N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12060
fragaria_vesca	FvH4_5g00880
malus_domestica	MD06G1067100.v1.1 MD17G1137600.v1.1
prunus_persica	Prupe.5G082000_v2.0.a1 Prupe.5G082000_v2.0.a1
pyrus_communis	pycom04g06840 pycom06g06470
rosa_chinensis	RchiOBHm_Chr7g0200491 RchiOBHm_Chr7g0200901
rosa_laevigata	RLG00000003721
rosa_multiflora	Rmu_sc0000617.1_g000023 Rmu_sc0000708.1_g000019
rosa_roxburghii	Rroxscaffold_3G00255920
rosa_rugosa	Rorug07G0060500 Rorug07G0060500
rosa_samantha	Rh7AG186300 Rh7BG189100 Rh7CG196400 Rh7CG196900 Rh7DG190300 Rh7DG192200
rosa_wichuraiana	Rw7G016320 Rw7G016400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	15
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccI	GTMKAC	1 cut(s)	208
AciI	CCGC	2 cut(s)	306, 466
AcsI	RAATTY	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	2 cut(s)	410, 536
AfiI	CCNNNNNNNGG	1 cut(s)	419
AgsI	TTSAA	5 cut(s)	139, 196, 456, 490, 715
AjnI	CCWGG	1 cut(s)	395
AluBI	AGCT	7 cut(s)	115, 122, 265, 403, 527, 575, 736
AluI	AGCT	7 cut(s)	115, 122, 265, 403, 527, 575, 736
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	2 cut(s)	133, 242
AoxI	GGCC	2 cut(s)	594, 699
ApeKI	GCWGC	1 cut(s)	429
ApoI	RAATTY	1 cut(s)	458
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
AspS9I	GGNCC	1 cut(s)	594
AsuC2I	CCSGG	1 cut(s)	684
AsuHPI	GGTGA	2 cut(s)	7, 672
BaeGI	GKGCMC	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	253
BarI	GAAGNNNNNNTAC	2 cut(s)	392, 424
Bbv12I	GWGCWC	1 cut(s)	588
BbvCI	CCTCAGC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	416
BccI	CCATC	2 cut(s)	515, 749
BceAI	ACGGC	1 cut(s)	581
BciT130I	CCWGG	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	684
BcoDI	GTCTC	2 cut(s)	133, 242
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	209
BisI	GCNGC	1 cut(s)	430
BlsI	GCNGC	1 cut(s)	431
Bme1390I	CCNGG	2 cut(s)	397, 684
BmgT120I	GGNCC	1 cut(s)	594
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	397, 684
BmrI	ACTGGG	2 cut(s)	429, 601
BmsI	GCATC	1 cut(s)	562
BmuI	ACTGGG	2 cut(s)	429, 601
BpmI	CTGGAG	1 cut(s)	758
Bpu10I	CCTNAGC	2 cut(s)	293, 549
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	1 cut(s)	684
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	378, 706
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse1I	ACTGG	2 cut(s)	424, 596
BseBI	CCWGG	1 cut(s)	397
BseDI	CCNNGG	2 cut(s)	378, 706
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMII	CTCAG	2 cut(s)	307, 540
BseNI	ACTGG	2 cut(s)	424, 596
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	416
BsgI	GTGCAG	1 cut(s)	457
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	596, 701
BsiEI	CGRYCG	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	588
BsiSI	CCGG	1 cut(s)	683
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmAI	GTCTC	2 cut(s)	133, 242
BsmBI	CGTCTC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	596, 701
Bsp1286I	GDGCHC	3 cut(s)	253, 345, 588
Bsp19I	CCATGG	1 cut(s)	378
BspACI	CCGC	2 cut(s)	306, 466
BspANI	GGCC	2 cut(s)	596, 701
BspCNI	CTCAG	2 cut(s)	306, 541
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	424, 596
BssECI	CCNNGG	2 cut(s)	378, 706
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	2 cut(s)	378, 706
Bst2UI	CCWGG	1 cut(s)	397
Bst4CI	ACNGT	2 cut(s)	236, 484
Bst6I	CTCTTC	2 cut(s)	283, 714
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	2 cut(s)	293, 549
BstDSI	CCRYGG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	553
BstMAI	GTCTC	2 cut(s)	133, 242
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	1 cut(s)	435
BstNI	CCWGG	1 cut(s)	397
BstSCI	CCNGG	2 cut(s)	395, 682
BstSFI	CTRYAG	1 cut(s)	209
BstSLI	GKGCMC	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	416
BsuRI	GGCC	2 cut(s)	596, 701
BtgI	CCRYGG	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	553
BtsIMutI	CAGTG	2 cut(s)	417, 489
Cac8I	GCNNGC	1 cut(s)	468
CciI	TCATGA	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	594
Csp6I	GTAC	2 cut(s)	409, 535
CviAII	CATG	2 cut(s)	103, 379
CviQI	GTAC	2 cut(s)	409, 535
DdeI	CTNAG	2 cut(s)	293, 549
Eam1104I	CTCTTC	2 cut(s)	283, 714
EarI	CTCTTC	2 cut(s)	283, 714
Eco130I	CCWWGG	2 cut(s)	378, 706
Eco24I	GRGCYC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	395
EcoT14I	CCWWGG	2 cut(s)	378, 706
EcoT38I	GRGCYC	1 cut(s)	253
ErhI	CCWWGG	2 cut(s)	378, 706
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	2 cut(s)	106, 382
FaiI	YATR	8 cut(s)	56, 78, 104, 220, 365, 380, 533, 669
FatI	CATG	2 cut(s)	102, 378
FauI	CCCGC	1 cut(s)	459
FblI	GTMKAC	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	430
FokI	GGATG	1 cut(s)	540
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	1 cut(s)	430
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	1 cut(s)	430
GsuI	CTGGAG	1 cut(s)	758
HaeIII	GGCC	2 cut(s)	596, 701
HapII	CCGG	1 cut(s)	683
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	106, 382
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	5 cut(s)	164, 214, 243, 677, 740
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	2 cut(s)	7, 672
Hpy166II	GTNNAC	2 cut(s)	39, 209
Hpy188I	TCNGA	7 cut(s)	10, 183, 227, 242, 248, 269, 754
Hpy188III	TCNNGA	3 cut(s)	103, 301, 548
Hpy8I	GTNNAC	2 cut(s)	39, 209
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	145, 419
HpyCH4III	ACNGT	2 cut(s)	236, 484
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	2 cut(s)	438, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	435
HpyF3I	CTNAG	2 cut(s)	293, 549
HpySE526I	ACGT	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	106, 382
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	1 cut(s)	416
LweI	GCATC	1 cut(s)	562
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	3 cut(s)	13, 513, 686
MboII	GAAGA	3 cut(s)	270, 512, 731
MhlI	GDGCHC	3 cut(s)	253, 345, 588
MluCI	AATT	5 cut(s)	28, 386, 458, 633, 747
MlyI	GAGTC	2 cut(s)	252, 749
MmeI	TCCRAC	2 cut(s)	33, 292
MnlI	CCTC	5 cut(s)	189, 302, 308, 328, 712
MseI	TTAA	1 cut(s)	746
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	2 cut(s)	397, 684
MvaI	CCWGG	1 cut(s)	397
MwoI	GCNNNNNNNGC	1 cut(s)	435
NciI	CCSGG	1 cut(s)	684
NcoI	CCATGG	1 cut(s)	378
NlaIII	CATG	2 cut(s)	106, 382
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	2 cut(s)	13, 686
PagI	TCATGA	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	1 cut(s)	594
PfeI	GAWTC	3 cut(s)	164, 214, 677
PflMI	CCANNNNNTGG	1 cut(s)	419
PkrI	GCNGC	1 cut(s)	431
PleI	GAGTC	2 cut(s)	251, 748
PpsI	GAGTC	2 cut(s)	251, 748
Psp6I	CCWGG	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	594
RsaI	GTAC	2 cut(s)	410, 536
RsaNI	GTAC	2 cut(s)	409, 535
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	746
SatI	GCNGC	1 cut(s)	430
Sau96I	GGNCC	1 cut(s)	594
SchI	GAGTC	2 cut(s)	252, 749
ScrFI	CCNGG	2 cut(s)	397, 684
SduI	GDGCHC	3 cut(s)	253, 345, 588
SfaNI	GCATC	1 cut(s)	562
SfcI	CTRYAG	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	5 cut(s)	28, 386, 458, 633, 747
SsiI	CCGC	2 cut(s)	306, 466
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	2 cut(s)	395, 682
StyI	CCWWGG	2 cut(s)	378, 706
TaaI	ACNGT	2 cut(s)	236, 484
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	2 cut(s)	72, 588
TasI	AATT	5 cut(s)	28, 386, 458, 633, 747
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	3 cut(s)	164, 214, 677
Tru1I	TTAA	1 cut(s)	746
Tru9I	TTAA	1 cut(s)	746
TscAI	CASTG	2 cut(s)	424, 489
TseFI	GTSAC	2 cut(s)	13, 686
TseI	GCWGC	1 cut(s)	429
Tsp45I	GTSAC	2 cut(s)	13, 686
TspDTI	ATGAA	4 cut(s)	17, 57, 684, 732
TspRI	CASTG	2 cut(s)	424, 489
Van91I	CCANNNNNTGG	1 cut(s)	419
XapI	RAATTY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	208
XspI	CTAG	1 cut(s)	354
ZraI	GACGTC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.