Rmu_sc0000861.1_g000070

One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000861.1
OG0004028
Physical Location & Seq
Reverse (-)
290921 .. 292078
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1158 bp
atgactaaaggtccgggtggggaagttctagacacctttccatactttgtgtctggagtacttcacttaatttcctctgcagtattgggctttggcggtatttatcatgcacttctgggacccgagactcttgaagaatcttttccatttttcggttatgtatggaaagatagaaataaaatgactacaattttgggtattcacttaatcttgttaggcataggtgcttttcttctagtattcaaggctctttattttgggggtgtatatgatacttgggctccgggtgggggagatgtaagaaaaattaccaacctaacccttagcccaagtattgtatttggttatttactaaaatccccttttggcggagaagggtggattgttagtgtggatggtttggaagatataatcggagggcatgtgtggttaggttccatttgtatacttggtggaatctggcatatcttaaccaaaccttttgcatgggctcgtcgtgcacttgtatggtctagagaggtttacctgtcttgtagtttagccgctttatctgtttttgattttactgcttgttgctttgtttggttcaataataccacctatctcagtgagttttacgggcccactggacccgaagcttctcaagctcaagcatttacttttttggttagagaccaacgtcttaggggtaacgtaggatctgctcaaggacctaccagtttaggtaaatatctaatgcgctctccaactggggaagttatttttggaggagaaactatgcgtttctgggatctgcatgccccctggttagaacctctaaggggtccaaatggtttggacttgagtaggctgaaaaaagacatacagccttggcaagagcggcattctgcggaatatatgactcatgctcctttaggttctttttattccgtgggtggcgtagctaccgagatcaatgcagtcaattatgtctctcctagaagttggttagctacttctcattttgttctaggattcttcctattcgtaagtcatttatggcatgcaggaagggctcgtgcagctgctgccggatttgaaaaaggaattgatggtgattttgaacctgttctttccagactcctcttaactgagatagagatccaatgcttgaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
PSII

Protein Analysis

385

Amino Acids

42.45

Weight (kDa)

6.41

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSII PF00421 6 - 371 1.4e-86 Photosystem II protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 880
AccI GTMKAC 1 cut(s) 445
AciI CCGC 5 cut(s) 96, 369, 543, 880, 890
AclWI GGATC 3 cut(s) 706, 798, 1135
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 4 cut(s) 152, 290, 368, 821
AgsI TTSAA 6 cut(s) 134, 244, 589, 1079, 1103, 1153
AhdI GACNNNNNGTC 1 cut(s) 9
AjnI CCWGG 1 cut(s) 803
AjuI GAANNNNNNNTTGG 2 cut(s) 747, 779
AluBI AGCT 5 cut(s) 638, 647, 944, 992, 1064
AluI AGCT 5 cut(s) 638, 647, 944, 992, 1064
Alw21I GWGCWC 1 cut(s) 502
Alw26I GTCTC 3 cut(s) 119, 666, 976
Alw44I GTGCAC 1 cut(s) 498
AlwI GGATC 3 cut(s) 706, 798, 1135
AlwNI CAGNNNCTG 1 cut(s) 1067
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 1 cut(s) 620
ApaI GGGCCC 1 cut(s) 624
ApaLI GTGCAC 1 cut(s) 498
ApeKI GCWGC 3 cut(s) 1061, 1064, 1067
ArsI GACNNNNNNTTYG 2 cut(s) 175, 207
Asp700I GAANNNNTTC 2 cut(s) 141, 1107
AspLEI GCGC 1 cut(s) 741
AspS9I GGNCC 7 cut(s) 11, 119, 620, 621, 629, 710, 824
AsuC2I CCSGG 2 cut(s) 15, 285
AsuHPI GGTGA 1 cut(s) 1106
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 5 cut(s) 11, 119, 629, 710, 824
BaeGI GKGCMC 2 cut(s) 502, 624
BanII GRGCYC 4 cut(s) 283, 493, 624, 1057
BauI CACGAG 1 cut(s) 1056
Bbv12I GWGCWC 1 cut(s) 502
BbvI GCAGC 3 cut(s) 1051, 1054, 1073
BccI CCATC 2 cut(s) 389, 1085
BcgI CGANNNNNNTGC 2 cut(s) 938, 972
BciT130I CCWGG 1 cut(s) 805
BcnI CCSGG 2 cut(s) 15, 285
BcoDI GTCTC 3 cut(s) 119, 666, 976
BfaI CTAG 5 cut(s) 29, 236, 513, 978, 1010
BfmI CTRYAG 1 cut(s) 78
BisI GCNGC 5 cut(s) 543, 881, 1062, 1065, 1068
BlsI GCNGC 5 cut(s) 544, 882, 1063, 1066, 1069
BmcAI AGTACT 1 cut(s) 60
Bme1390I CCNGG 3 cut(s) 15, 285, 805
Bme18I GGWCC 5 cut(s) 11, 119, 629, 710, 824
BmeRI GACNNNNNGTC 1 cut(s) 9
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 7 cut(s) 11, 119, 620, 621, 629, 710, 824
BmiI GGNNCC 7 cut(s) 120, 121, 282, 436, 622, 631, 825
BmrFI CCNGG 3 cut(s) 15, 285, 805
BmrI ACTGGG 1 cut(s) 759
BmuI ACTGGG 1 cut(s) 759
BoxI GACNNNNGTC 1 cut(s) 678
BpmI CTGGAG 1 cut(s) 75
Bpu10I CCTNAGC 1 cut(s) 323
BpuEI CTTGAG 4 cut(s) 627, 633, 690, 862
BpuMI CCSGG 2 cut(s) 15, 285
BsaBI GATNNNNATC 1 cut(s) 1139
BsaI GGTCTC 1 cut(s) 666
BsaJI CCNNGG 3 cut(s) 803, 869, 930
BsaXI ACNNNNNCTCC 6 cut(s) 265, 295, 408, 438, 892, 922
Bsc4I CCNNNNNNNGG 4 cut(s) 152, 290, 368, 821
Bse1I ACTGG 3 cut(s) 631, 717, 754
Bse8I GATNNNNATC 1 cut(s) 1139
BseBI CCWGG 1 cut(s) 805
BseDI CCNNGG 3 cut(s) 803, 869, 930
BseGI GGATG 1 cut(s) 400
BseJI GATNNNNATC 1 cut(s) 1139
BseLI CCNNNNNNNGG 4 cut(s) 152, 290, 368, 821
BseMII CTCAG 2 cut(s) 619, 1122
BseNI ACTGG 3 cut(s) 631, 717, 754
BseRI GAGGAG 2 cut(s) 783, 1112
BseSI GKGCMC 2 cut(s) 502, 624
BseXI GCAGC 3 cut(s) 1051, 1054, 1073
BsgI GTGCAG 1 cut(s) 1080
BshFI GGCC 1 cut(s) 622
BsiHKAI GWGCWC 1 cut(s) 502
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 3 cut(s) 14, 284, 1071
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 4 cut(s) 152, 290, 368, 821
BsmAI GTCTC 3 cut(s) 119, 666, 976
BsmFI GGGAC 1 cut(s) 132
BsmI GAATGC 1 cut(s) 883
BsnI GGCC 1 cut(s) 622
Bso31I GGTCTC 1 cut(s) 666
BsoBI CYCGRG 1 cut(s) 122
Bsp120I GGGCCC 1 cut(s) 620
Bsp1286I GDGCHC 5 cut(s) 283, 493, 502, 624, 1057
Bsp143I GATC 4 cut(s) 698, 790, 951, 1140
BspACI CCGC 5 cut(s) 96, 369, 543, 880, 890
BspANI GGCC 1 cut(s) 622
BspCNI CTCAG 2 cut(s) 618, 1123
BspLI GGNNCC 7 cut(s) 120, 121, 282, 436, 622, 631, 825
BspMAI CTGCAG 1 cut(s) 82
BspPI GGATC 3 cut(s) 706, 798, 1135
BspTNI GGTCTC 1 cut(s) 666
BsrBI CCGCTC 1 cut(s) 880
BsrI ACTGG 3 cut(s) 631, 717, 754
BssECI CCNNGG 3 cut(s) 803, 869, 930
BssMI GATC 4 cut(s) 698, 790, 951, 1140
BssNAI GTATAC 1 cut(s) 446
BssSI CACGAG 1 cut(s) 1056
BssT1I CCWWGG 1 cut(s) 869
Bst1107I GTATAC 1 cut(s) 446
Bst2BI CACGAG 1 cut(s) 1056
Bst2UI CCWGG 1 cut(s) 805
BstAPI GCANNNNNTGC 1 cut(s) 1067
BstC8I GCNNGC 2 cut(s) 798, 1044
BstDEI CTNAG 5 cut(s) 323, 605, 683, 818, 1131
BstDSI CCRYGG 1 cut(s) 930
BstF5I GGATG 1 cut(s) 400
BstHHI GCGC 1 cut(s) 741
BstKTI GATC 4 cut(s) 701, 793, 954, 1143
BstMAI GTCTC 3 cut(s) 119, 666, 976
BstMBI GATC 4 cut(s) 698, 790, 951, 1140
BstMWI GCNNNNNNNGC 6 cut(s) 497, 644, 880, 1052, 1061, 1067
BstNI CCWGG 1 cut(s) 805
BstNSI RCATGY 3 cut(s) 425, 800, 1046
BstPAI GACNNNNGTC 1 cut(s) 678
BstSCI CCNGG 3 cut(s) 13, 283, 803
BstSFI CTRYAG 1 cut(s) 78
BstSLI GKGCMC 2 cut(s) 502, 624
BstV1I GCAGC 3 cut(s) 1051, 1054, 1073
BstX2I RGATCY 3 cut(s) 698, 790, 1140
BstYI RGATCY 3 cut(s) 698, 790, 1140
BstZ17I GTATAC 1 cut(s) 446
BsuRI GGCC 1 cut(s) 622
BtgI CCRYGG 1 cut(s) 930
BtsCI GGATG 1 cut(s) 400
BtsIMutI CAGTG 2 cut(s) 613, 624
Cac8I GCNNGC 2 cut(s) 798, 1044
CaiI CAGNNNCTG 1 cut(s) 1067
CfoI GCGC 1 cut(s) 741
Cfr13I GGNCC 7 cut(s) 11, 119, 620, 621, 629, 710, 824
Csp6I GTAC 1 cut(s) 59
CviAII CATG 6 cut(s) 107, 422, 486, 797, 905, 1043
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 5 cut(s) 323, 605, 683, 818, 1131
DpnI GATC 4 cut(s) 700, 792, 953, 1142
DpnII GATC 4 cut(s) 698, 790, 951, 1140
DriI GACNNNNNGTC 1 cut(s) 9
Eam1105I GACNNNNNGTC 1 cut(s) 9
EciI GGCGGA 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 869
Eco24I GRGCYC 4 cut(s) 283, 493, 624, 1057
Eco31I GGTCTC 1 cut(s) 666
Eco47I GGWCC 5 cut(s) 11, 119, 629, 710, 824
Eco88I CYCGRG 1 cut(s) 122
EcoO109I RGGNCCY 2 cut(s) 119, 710
EcoRII CCWGG 1 cut(s) 803
EcoT14I CCWWGG 1 cut(s) 869
EcoT38I GRGCYC 4 cut(s) 283, 493, 624, 1057
ErhI CCWWGG 1 cut(s) 869
FaeI CATG 6 cut(s) 110, 425, 489, 800, 908, 1046
FaqI GGGAC 1 cut(s) 132
FatI CATG 6 cut(s) 106, 421, 485, 796, 904, 1042
FblI GTMKAC 1 cut(s) 445
Fnu4HI GCNGC 5 cut(s) 543, 881, 1062, 1065, 1068
FokI GGATG 1 cut(s) 407
FriOI GRGCYC 4 cut(s) 283, 493, 624, 1057
Fsp4HI GCNGC 5 cut(s) 543, 881, 1062, 1065, 1068
FspBI CTAG 5 cut(s) 29, 236, 513, 978, 1010
GlaI GCGC 1 cut(s) 740
GluI GCNGC 5 cut(s) 543, 881, 1062, 1065, 1068
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 622
HapII CCGG 3 cut(s) 14, 284, 1071
HhaI GCGC 1 cut(s) 741
Hin1II CATG 6 cut(s) 110, 425, 489, 800, 908, 1046
Hin6I GCGC 1 cut(s) 739
HinP1I GCGC 1 cut(s) 739
HindIII AAGCTT 1 cut(s) 636
HinfI GANTC 6 cut(s) 127, 137, 456, 901, 1014, 1119
HpaII CCGG 3 cut(s) 14, 284, 1071
HphI GGTGA 1 cut(s) 1106
Hpy166II GTNNAC 3 cut(s) 446, 500, 523
Hpy188I TCNGA 1 cut(s) 416
Hpy188III TCNNGA 5 cut(s) 29, 54, 131, 513, 1116
Hpy8I GTNNAC 3 cut(s) 446, 500, 523
Hpy99I CGWCG 1 cut(s) 498
HpyAV CCTTC 2 cut(s) 368, 1044
HpyCH4IV ACGT 2 cut(s) 679, 693
HpyCH4V TGCA 8 cut(s) 80, 110, 485, 500, 796, 959, 1046, 1061
HpyF10VI GCNNNNNNNGC 6 cut(s) 497, 644, 880, 1052, 1061, 1067
HpyF3I CTNAG 5 cut(s) 323, 605, 683, 818, 1131
HpySE526I ACGT 2 cut(s) 679, 693
Hsp92II CATG 6 cut(s) 110, 425, 489, 800, 908, 1046
HspAI GCGC 1 cut(s) 739
KflI GGGWCCC 1 cut(s) 119
Kzo9I GATC 4 cut(s) 698, 790, 951, 1140
LmnI GCTCC 2 cut(s) 286, 913
Lsp1109I GCAGC 3 cut(s) 1051, 1054, 1073
MaeI CTAG 5 cut(s) 29, 236, 513, 978, 1010
MaeII ACGT 2 cut(s) 679, 693
MaeIII GTNAC 1 cut(s) 689
MalI GATC 4 cut(s) 700, 792, 953, 1142
MbiI CCGCTC 1 cut(s) 880
MboI GATC 4 cut(s) 698, 790, 951, 1140
MboII GAAGA 4 cut(s) 146, 224, 416, 1009
MflI RGATCY 3 cut(s) 698, 790, 1140
MhlI GDGCHC 5 cut(s) 283, 493, 502, 624, 1057
MluCI AATT 5 cut(s) 69, 189, 306, 964, 1086
MlyI GAGTC 3 cut(s) 121, 895, 1113
MmeI TCCRAC 1 cut(s) 770
MnlI CCTC 6 cut(s) 85, 410, 511, 761, 825, 1133
MroXI GAANNNNTTC 2 cut(s) 141, 1107
MseI TTAA 4 cut(s) 68, 206, 470, 1127
MslI CAYNNNNRTG 1 cut(s) 505
MspA1I CMGCKG 1 cut(s) 1064
MspI CCGG 3 cut(s) 14, 284, 1071
MspR9I CCNGG 3 cut(s) 15, 285, 805
Mva1269I GAATGC 1 cut(s) 883
MvaI CCWGG 1 cut(s) 805
MwoI GCNNNNNNNGC 6 cut(s) 497, 644, 880, 1052, 1061, 1067
NciI CCSGG 2 cut(s) 15, 285
NdeII GATC 4 cut(s) 698, 790, 951, 1140
NlaIII CATG 6 cut(s) 110, 425, 489, 800, 908, 1046
NlaIV GGNNCC 7 cut(s) 120, 121, 282, 436, 622, 631, 825
NspI RCATGY 3 cut(s) 425, 800, 1046
PaeI GCATGC 2 cut(s) 800, 1046
PctI GAATGC 1 cut(s) 883
PdmI GAANNNNTTC 2 cut(s) 141, 1107
PfeI GAWTC 3 cut(s) 137, 456, 1014
PkrI GCNGC 5 cut(s) 544, 882, 1063, 1066, 1069
PleI GAGTC 3 cut(s) 121, 895, 1113
PpsI GAGTC 3 cut(s) 121, 895, 1113
PpuMI RGGWCCY 2 cut(s) 119, 710
PshAI GACNNNNGTC 1 cut(s) 678
Psp5II RGGWCCY 2 cut(s) 119, 710
Psp6I CCWGG 1 cut(s) 803
PspGI CCWGG 1 cut(s) 803
PspN4I GGNNCC 7 cut(s) 120, 121, 282, 436, 622, 631, 825
PspOMI GGGCCC 1 cut(s) 620
PspPI GGNCC 7 cut(s) 11, 119, 620, 621, 629, 710, 824
PspPPI RGGWCCY 2 cut(s) 119, 710
PstI CTGCAG 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 1067
PsuI RGATCY 3 cut(s) 698, 790, 1140
PvuII CAGCTG 1 cut(s) 1064
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 505
SaqAI TTAA 4 cut(s) 68, 206, 470, 1127
SatI GCNGC 5 cut(s) 543, 881, 1062, 1065, 1068
Sau3AI GATC 4 cut(s) 698, 790, 951, 1140
Sau96I GGNCC 7 cut(s) 11, 119, 620, 621, 629, 710, 824
ScaI AGTACT 1 cut(s) 60
SchI GAGTC 3 cut(s) 121, 895, 1113
ScrFI CCNGG 3 cut(s) 15, 285, 805
SduI GDGCHC 5 cut(s) 283, 493, 502, 624, 1057
SfcI CTRYAG 1 cut(s) 78
SinI GGWCC 5 cut(s) 11, 119, 629, 710, 824
SmiMI CAYNNNNRTG 1 cut(s) 505
SmlI CTYRAG 4 cut(s) 642, 648, 705, 841
SmoI CTYRAG 4 cut(s) 642, 648, 705, 841
SphI GCATGC 2 cut(s) 800, 1046
Sse9I AATT 5 cut(s) 69, 189, 306, 964, 1086
SsiI CCGC 5 cut(s) 96, 369, 543, 880, 890
SspMI CTAG 5 cut(s) 29, 236, 513, 978, 1010
StyD4I CCNGG 3 cut(s) 13, 283, 803
StyI CCWWGG 1 cut(s) 869
TaiI ACGT 2 cut(s) 682, 696
TasI AATT 5 cut(s) 69, 189, 306, 964, 1086
TatI WGTACW 1 cut(s) 58
TauI GCSGC 2 cut(s) 545, 883
TfiI GAWTC 3 cut(s) 137, 456, 1014
Tru1I TTAA 4 cut(s) 68, 206, 470, 1127
Tru9I TTAA 4 cut(s) 68, 206, 470, 1127
TscAI CASTG 2 cut(s) 613, 631
TseI GCWGC 3 cut(s) 1061, 1064, 1067
TspGWI ACGGA 1 cut(s) 919
TspRI CASTG 2 cut(s) 613, 631
VneI GTGCAC 1 cut(s) 498
VpaK11BI GGWCC 5 cut(s) 11, 119, 629, 710, 824
XbaI TCTAGA 2 cut(s) 28, 512
XceI RCATGY 3 cut(s) 425, 800, 1046
XmiI GTMKAC 1 cut(s) 445
XmnI GAANNNNTTC 2 cut(s) 141, 1107
XspI CTAG 5 cut(s) 29, 236, 513, 978, 1010
ZrmI AGTACT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.