Rmu_sc0001051.1_g000009

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001051.1
OG0012566
Physical Location & Seq
Reverse (-)
46095 .. 50447
4353 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 4353 bp
atgctctgtttctctaaacccaagacctctaatgggataatgggattgtttttccgactccggaacactctttcttctcctccggcgataacctcctttgtcagacacaaacaccattcaatcaatcccaaagcctcacacttccttggtctgctcaatctctgccgaaccggcgaggacttgaaacccctcaagtcctttctctttgctcatggactcatcaaccatgtctctttgttagaacaatttttcaggtcctgttttcatctgggtgcttcacatttagctctcgctacattccaacaaatcaaaaggccgagtcttggcttgcagaacctgttgatcaggtgtctttgcaatcatggcttataccaagaccttttctatgcgtatatgaaatctcggctttcgggttgcccttctgatgatttcacatttccgtttgtgatcaaggcctgtgcggctttgggagctgttaagattggtagagaggttcatggtgttgtgttcagaactgggtttgagcagaaccttgttatacagactagtttggttgacttctatgcaagatctgggtgtgtggaaactgcacgccaagtggtcgatagaattccccaaccggacttggttccttggaatgcattgatagctggttattcgttgaatggattcgattgggaagcgttagacgttttcaggaagattgttttcagtgatctgaggccgaatttgagtactctggctagcattgttcctgtttgcactcgtttggggtgtgttcgttctggtgagtctcttcattgctttgctgtaaagtctggatacttttcaaatgattttctggttcccgctttgatttcaatgtacgcgggggatggggatatatgtggtgctagaaagttgtttgattctgtagtggaaaagaatgttgctgtttggaatgccatgatttctgcatatacacaaaggcaagagcctgtgttagcttttgagttgttccggtggatgctgatagttgacataaggcctaatttggtcactttcgtgtcgattattccctcatttgagaatttcattagcctttcttttggcgagtctcttcatgcttgtgtagttaaacatggatcagaaaatcagcttccggtattaactgccctggtatcaatgtatgccaaacttggcagtattgatgaatccaggtatcttttcgaccagatgcacagtaaaaaccttcttctgtggaattcaatgatttctgggtacgtgtacaatgggttatgggatttaagtctgggtttgtttcgtgaaatgcaagtttcaagatttgatgcggatgcagtctctgttattagtataatttctgcttgctctaaacttgaggctgatttgttgggtaggtctgcccatgcatttagtataagaaagggtttccactcaaacatcaatctgtcaaatgcattgttggcattttactctgattgtcatcttatctcttattctattactttgtttcacaaaatgcctctaagaaatggcataacgtggaatacattaatttccagttgtgtgcaccatggagaaacggacggagcagttgctctatactaccagatgcagaaagagggtttcaagttggacttggtcaccttgaccagtatactccctagttggagtgacgaggaaaacttagggcaaggaatggcgccgagtcttggcttgcagaacctgttgatcaggtgtctttgcaatcatggcttataccaagaccttttctatgcgtatatgaaatctcggctttcgggttgcccttctgatgatttcacatttccgtttgtgatcaaggcctgtgcggctttgggagctgttaagattggtagagaggttcatggtgttgtgttcagaactgggtttgagcagaaccttgttatacagactagtttggttgacttctatgcaagatctgggtgtgtggaaactgcacgccaagtggtcgatagaattccccaaccggacttggttccttggaatgcattgatagctggttattcgttgaatggattcgattgggaagcgttagacgttttcaggaagattgttttcagtgatctgaggccgaatttgagtactctggctagcattgttcctgtttgcactcgtttggggtgtgttcgttctggtgagtctcttcattgctttgctgtcaagtctggatacttttcaaatgattttctggttcccgctttgatttcaatgtacgcgggggatggggatatatgtggtgctagaaagttgtttgattctgtagtggaaaagaatgttgctgtttggaatgccatgatttctgcatatacacaaaggcaagagcctgtgttagcttttgagttgttccggtggatgctgatagttgacataaggcctaatttggtcactttcgtgtcgattattccctcatttgagaatttcattagcctttcttttggcgagtctcttcatgcttgtgtagttaaacatggatcagaaaatcagcttccggtattaactgccctggtatcaatgtatgccaaacttggcagtattgatgaatccaggtatcttttcgaccagatgcacagtaaaaaccttcttctgtggaattcaatgatttctgggtacgtgtacaatgggttatgggatttaagtctgggtttgtttcgtgaaatgcaagtttcaagatttgatgcggatgcagtctctgttattagtataatttctgcttgctctaaacttgaggctgatttgttgggtaggtctgcccatgcatttagtataagaaagggtttccactcaaacatcaatctgtcaaatgcattgttggcattttactctgattgtcatcttatctcttattctattactttgtttcacaaaatgcctctaagaaatggcataacgtggaatacattaatttccagttgtgtgcaccatggagaaacggacggagcagttgctctatactaccagatgcagaaagagggtttcaagttggacttggtcaccttgaccagtatactccctagttggagtgacgaggaaaacttagggcaaggaatggcttttcatggttacgctataaaacatgggtttgcttcagacatttctctgcttaactcacttatttgtatgtactttaacagcggagaccttgatgctgggaggttggttttcgaaaccatgcccaaaagaactgtggtgtcttggaatgctctgatggctggcttcaagaatcataatttacagaatgaggttatggccgtctttggtcaaatgataaaggatgatcagagaccaaattatgtaactttgctaaatttattgcctgcatgctactcccagttacagggtaagtcgattcatgctctggcagttagaacaagtattctccatgaaacccctcttctttcatcactcatgtttatgtatgccagatttgaaaaccatgattcatccatcttactgtttaaaacgagaaaaatggaggatatttctttgtggaatgccattatgtcggtgcaaatacaagcaaaaagtagcgagaatgcagtgggatttttcaatagcttgctccagatgaaattggaaccagacaatttgacccttctgaatttggtctcttcatgtgctcagctgaatagcctcactcttgctaattctgtaatgggttacatcattcgcaagggctttgacgaagatctggttattagtaatgcactaatagatttgcattcaagatgtggaaacatatgcattgcgagaaagctgtttgatgggttggtcaagagagatgctgtgtcttggagtgtgatgattaatgggtatggcttgaatgggaatggcgaagctgccctagatcttttcttgcagatgaagctatcagggatagcacctaatggggttacttatttaagtgttttatcagcctgcagccattctggattggttgagcaaggccgcgccgtattccaatctatggcagaacatgggataacacgccaaatgaagcactatgcttgcatggtggaccttctaggaagaacgggtaatttgactgaggcttatgacattgttcgggaactaccctgtaaaccttcaacaagcctacttgagtctctgctgggtgcttgtagaattcatgggaacgttgaacttggacagaaaattggtgggttgctctctgaattggaccctgaaaattcaagaccacatgtaatgcttcataatatttatgccgcagctgggagatggactgatgctggtagagtaaggtctaagattgaagagaaagttcctggtttcagtcttctaatgggacattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 WEMBL

Protein Analysis

1450

Amino Acids

161.19

Weight (kDa)

7.13

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 308 - 353 9e-08 PPR repeat family
PPR PF01535 414 - 440 1e-05 PPR repeat
PPR_2 PF13041 513 - 554 3.8e-08 PPR repeat family
PPR PF01535 513 - 543 8.5e-07 PPR repeat
PPR_2 PF13041 771 - 816 9e-08 PPR repeat family
PPR PF01535 877 - 903 1e-05 PPR repeat
PPR_2 PF13041 976 - 1017 3.8e-08 PPR repeat family
PPR PF01535 976 - 1006 8.5e-07 PPR repeat
PPR_2 PF13041 1274 - 1321 1.3e-10 PPR repeat family
PPR PF01535 1276 - 1306 6.7e-07 PPR repeat
E_motif PF20431 1390 - 1443 1.5e-08 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1702
AccB7I CCANNNNNTGG 1 cut(s) 4006
AccI GTMKAC 2 cut(s) 1657, 3046
AccII CGCG 3 cut(s) 869, 2258, 3990
AccIII TCCGGA 1 cut(s) 60
AclI AACGTT 1 cut(s) 4176
AclWI GGATC 2 cut(s) 1132, 2521
AcoI YGGCCR 1 cut(s) 3288
AcuI CTGAAG 1 cut(s) 3111
AcyI GRCGYC 1 cut(s) 1703
AfaI GTAC 9 cut(s) 736, 866, 1262, 1268, 2125, 2255, 2651, 2657, 3164
AfiI CCNNNNNNNGG 6 cut(s) 33, 323, 1712, 3376, 4006, 4272
AflIII ACRYGT 3 cut(s) 1263, 2652, 4240
AhlI ACTAGT 2 cut(s) 545, 1934
AjnI CCWGG 5 cut(s) 1155, 1196, 2544, 2585, 4324
AleI CACNNNNGTG 2 cut(s) 1043, 2432
Alw21I GWGCWC 3 cut(s) 1572, 2961, 3661
Alw44I GTGCAC 2 cut(s) 1568, 2957
AlwI GGATC 2 cut(s) 1132, 2521
AlwNI CAGNNNCTG 5 cut(s) 258, 337, 1343, 1726, 2732
Aor13HI TCCGGA 1 cut(s) 60
AoxI GGCC 9 cut(s) 314, 453, 722, 1025, 1842, 2111, 2414, 3288, 3985
ApaLI GTGCAC 2 cut(s) 1568, 2957
ApeKI GCWGC 3 cut(s) 3878, 3960, 4268
AseI ATTAAT 3 cut(s) 1553, 2942, 3846
Asp700I GAANNNNTTC 2 cut(s) 668, 2057
AspLEI GCGC 2 cut(s) 1705, 3992
AspS9I GGNCC 3 cut(s) 255, 4057, 4219
AsuHPI GGTGA 4 cut(s) 800, 1636, 2189, 3025
AsuII TTCGAA 1 cut(s) 3204
AsuNHI GCTAGC 2 cut(s) 743, 2132
AvaII GGWCC 3 cut(s) 255, 4057, 4219
BaeGI GKGCMC 2 cut(s) 1572, 2961
BanI GGYRCC 1 cut(s) 1702
BbsI GAAGAC 1 cut(s) 4328
Bbv12I GWGCWC 3 cut(s) 1572, 2961, 3661
BbvI GCAGC 3 cut(s) 3865, 3972, 4280
BccI CCATC 6 cut(s) 869, 2258, 3241, 3494, 3797, 4272
BceAI ACGGC 2 cut(s) 3275, 3977
BciT130I CCWGG 5 cut(s) 1157, 1198, 2546, 2587, 4326
BciVI GTATCC 2 cut(s) 815, 2204
BclI TGATCA 5 cut(s) 342, 447, 1731, 1836, 3316
BcuI ACTAGT 2 cut(s) 545, 1934
BfmI CTRYAG 3 cut(s) 912, 2301, 3958
BfoI RGCGCY 1 cut(s) 1706
BfuI GTATCC 2 cut(s) 815, 2204
BglI GCCNNNNNGGC 3 cut(s) 171, 461, 1850
BglII AGATCT 4 cut(s) 569, 1958, 3727, 3886
BisI GCNGC 7 cut(s) 462, 1851, 3879, 3961, 3988, 4266, 4269
BlpI GCTNAGC 1 cut(s) 3660
BlsI GCNGC 7 cut(s) 463, 1852, 3880, 3962, 3989, 4267, 4270
BmcAI AGTACT 2 cut(s) 736, 2125
Bme1390I CCNGG 5 cut(s) 1157, 1198, 2546, 2587, 4326
Bme18I GGWCC 3 cut(s) 255, 4057, 4219
BmgT120I GGNCC 3 cut(s) 255, 4057, 4219
BmiI GGNNCC 7 cut(s) 630, 846, 1704, 2019, 2235, 3618, 4221
BmrFI CCNGG 5 cut(s) 1157, 1198, 2546, 2587, 4326
BmrI ACTGGG 3 cut(s) 525, 1914, 3364
BmtI GCTAGC 2 cut(s) 747, 2136
BmuI ACTGGG 3 cut(s) 525, 1914, 3364
BpiI GAAGAC 1 cut(s) 4328
BpmI CTGGAG 1 cut(s) 3587
Bpu1102I GCTNAGC 1 cut(s) 3660
Bpu14I TTCGAA 1 cut(s) 3204
BpuEI CTTGAG 4 cut(s) 176, 1397, 2786, 4160
BsaAI YACGTR 2 cut(s) 1264, 2653
BsaBI GATNNNNATC 2 cut(s) 1482, 2871
BsaHI GRCGYC 1 cut(s) 1703
BsaI GGTCTC 3 cut(s) 3171, 3316, 3652
BsaJI CCNNGG 7 cut(s) 145, 632, 1155, 1573, 2021, 2544, 2962
BsaWI WCCGGW 7 cut(s) 60, 619, 999, 1141, 2008, 2388, 2530
Bsc4I CCNNNNNNNGG 6 cut(s) 33, 323, 1712, 3376, 4006, 4272
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 7 cut(s) 520, 1560, 1653, 1909, 2949, 3042, 3370
Bse3DI GCAATG 3 cut(s) 799, 2188, 3783
Bse8I GATNNNNATC 2 cut(s) 1482, 2871
BseAI TCCGGA 1 cut(s) 60
BseBI CCWGG 5 cut(s) 1157, 1198, 2546, 2587, 4326
BseDI CCNNGG 7 cut(s) 145, 632, 1155, 1573, 2021, 2544, 2962
BseGI GGATG 8 cut(s) 880, 1011, 1339, 2269, 2400, 2728, 3319, 3482
BseJI GATNNNNATC 2 cut(s) 1482, 2871
BseLI CCNNNNNNNGG 6 cut(s) 33, 323, 1712, 3376, 4006, 4272
BseMI GCAATG 3 cut(s) 799, 2188, 3783
BseMII CTCAG 4 cut(s) 710, 2099, 3674, 4077
BseNI ACTGG 7 cut(s) 520, 1560, 1653, 1909, 2949, 3042, 3370
BseRI GAGGAG 1 cut(s) 69
BseSI GKGCMC 2 cut(s) 1572, 2961
BseXI GCAGC 3 cut(s) 3865, 3972, 4280
BseYI CCCAGC 3 cut(s) 3188, 4150, 4271
BsgI GTGCAG 2 cut(s) 573, 1962
Bsh1236I CGCG 3 cut(s) 869, 2258, 3990
BshFI GGCC 9 cut(s) 316, 455, 724, 1027, 1844, 2113, 2416, 3290, 3987
BshNI GGYRCC 1 cut(s) 1702
BsiHKAI GWGCWC 3 cut(s) 1572, 2961, 3661
BsiSI CCGG 9 cut(s) 61, 83, 171, 620, 1000, 1142, 2009, 2389, 2531
BslI CCNNNNNNNGG 6 cut(s) 33, 323, 1712, 3376, 4006, 4272
BsmI GAATGC 8 cut(s) 643, 946, 2032, 2335, 3244, 3538, 3580, 3760
BsnI GGCC 9 cut(s) 316, 455, 724, 1027, 1844, 2113, 2416, 3290, 3987
Bso31I GGTCTC 3 cut(s) 3171, 3316, 3652
Bsp119I TTCGAA 1 cut(s) 3204
Bsp1286I GDGCHC 3 cut(s) 1572, 2961, 3661
Bsp13I TCCGGA 1 cut(s) 60
Bsp1407I TGTACA 2 cut(s) 1266, 2655
Bsp1720I GCTNAGC 1 cut(s) 3660
Bsp19I CCATGG 2 cut(s) 1573, 2962
BspANI GGCC 9 cut(s) 316, 455, 724, 1027, 1844, 2113, 2416, 3290, 3987
BspCNI CTCAG 4 cut(s) 711, 2100, 3673, 4078
BspEI TCCGGA 1 cut(s) 60
BspFNI CGCG 3 cut(s) 869, 2258, 3990
BspLI GGNNCC 7 cut(s) 630, 846, 1704, 2019, 2235, 3618, 4221
BspMAI CTGCAG 1 cut(s) 3962
BspOI GCTAGC 2 cut(s) 747, 2136
BspPI GGATC 2 cut(s) 1132, 2521
BspT104I TTCGAA 1 cut(s) 3204
BspT107I GGYRCC 1 cut(s) 1702
BspTNI GGTCTC 3 cut(s) 3171, 3316, 3652
BsrDI GCAATG 3 cut(s) 799, 2188, 3783
BsrFI RCCGGY 1 cut(s) 170
BsrGI TGTACA 2 cut(s) 1266, 2655
BsrI ACTGG 7 cut(s) 520, 1560, 1653, 1909, 2949, 3042, 3370
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 7 cut(s) 145, 632, 1155, 1573, 2021, 2544, 2962
BssNAI GTATAC 2 cut(s) 1658, 3047
BssNI GRCGYC 1 cut(s) 1703
BssT1I CCWWGG 5 cut(s) 145, 632, 1573, 2021, 2962
Bst1107I GTATAC 2 cut(s) 1658, 3047
Bst2UI CCWGG 5 cut(s) 1157, 1198, 2546, 2587, 4326
Bst4CI ACNGT 4 cut(s) 1223, 2612, 3226, 3495
Bst6I CTCTTC 7 cut(s) 801, 1104, 2190, 2493, 3438, 3655, 4308
BstACI GRCGYC 1 cut(s) 1703
BstAUI TGTACA 2 cut(s) 1266, 2655
BstBAI YACGTR 2 cut(s) 1264, 2653
BstBI TTCGAA 1 cut(s) 3204
BstDEI CTNAG 9 cut(s) 719, 1526, 1687, 2108, 2915, 3076, 3660, 4086, 4305
BstDSI CCRYGG 2 cut(s) 1573, 2962
BstEII GGTNACC 2 cut(s) 1642, 3031
BstF5I GGATG 8 cut(s) 880, 1011, 1339, 2269, 2400, 2728, 3319, 3482
BstFNI CGCG 3 cut(s) 869, 2258, 3990
BstH2I RGCGCY 1 cut(s) 1706
BstHHI GCGC 2 cut(s) 1705, 3992
BstNI CCWGG 5 cut(s) 1157, 1198, 2546, 2587, 4326
BstNSI RCATGY 2 cut(s) 3363, 4244
BstPI GGTNACC 2 cut(s) 1642, 3031
BstSCI CCNGG 5 cut(s) 1155, 1196, 2544, 2585, 4324
BstSFI CTRYAG 3 cut(s) 912, 2301, 3958
BstSLI GKGCMC 2 cut(s) 1572, 2961
BstUI CGCG 3 cut(s) 869, 2258, 3990
BstV1I GCAGC 3 cut(s) 3865, 3972, 4280
BstV2I GAAGAC 1 cut(s) 4328
BstX2I RGATCY 4 cut(s) 569, 1958, 3727, 3886
BstYI RGATCY 4 cut(s) 569, 1958, 3727, 3886
BstZ17I GTATAC 2 cut(s) 1658, 3047
BsuI GTATCC 2 cut(s) 815, 2204
BsuRI GGCC 9 cut(s) 316, 455, 724, 1027, 1844, 2113, 2416, 3290, 3987
BtgI CCRYGG 2 cut(s) 1573, 2962
BtsCI GGATG 8 cut(s) 880, 1011, 1339, 2269, 2400, 2728, 3319, 3482
BtsI GCAGTG 1 cut(s) 3585
BtsIMutI CAGTG 3 cut(s) 718, 2107, 3585
CaiI CAGNNNCTG 5 cut(s) 258, 337, 1343, 1726, 2732
CfoI GCGC 2 cut(s) 1705, 3992
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 3 cut(s) 255, 4057, 4219
Csp6I GTAC 9 cut(s) 735, 865, 1261, 1267, 2124, 2254, 2650, 2656, 3163
CviQI GTAC 9 cut(s) 735, 865, 1261, 1267, 2124, 2254, 2650, 2656, 3163
DdeI CTNAG 9 cut(s) 719, 1526, 1687, 2108, 2915, 3076, 3660, 4086, 4305
DinI GGCGCC 1 cut(s) 1704
DraI TTTAAA 1 cut(s) 3499
EaeI YGGCCR 1 cut(s) 3288
Eam1104I CTCTTC 7 cut(s) 801, 1104, 2190, 2493, 3438, 3655, 4308
EarI CTCTTC 7 cut(s) 801, 1104, 2190, 2493, 3438, 3655, 4308
Eco130I CCWWGG 5 cut(s) 145, 632, 1573, 2021, 2962
Eco147I AGGCCT 4 cut(s) 455, 1027, 1844, 2416
Eco31I GGTCTC 3 cut(s) 3171, 3316, 3652
Eco47I GGWCC 3 cut(s) 255, 4057, 4219
Eco57I CTGAAG 1 cut(s) 3111
Eco91I GGTNACC 2 cut(s) 1642, 3031
EcoO109I RGGNCCY 1 cut(s) 255
EcoO65I GGTNACC 2 cut(s) 1642, 3031
EcoRI GAATTC 5 cut(s) 609, 1243, 1998, 2632, 4164
EcoRII CCWGG 5 cut(s) 1155, 1196, 2544, 2585, 4324
EcoT14I CCWWGG 5 cut(s) 145, 632, 1573, 2021, 2962
EcoT22I ATGCAT 7 cut(s) 643, 1411, 1459, 2032, 2800, 2848, 3785
EgeI GGCGCC 1 cut(s) 1704
EheI GGCGCC 1 cut(s) 1704
ErhI CCWWGG 5 cut(s) 145, 632, 1573, 2021, 2962
FalI AAGNNNNNCTT 4 cut(s) 1622, 1654, 3011, 3043
FauI CCCGC 4 cut(s) 856, 862, 2245, 2251
FauNDI CATATG 1 cut(s) 3779
FbaI TGATCA 5 cut(s) 342, 447, 1731, 1836, 3316
FblI GTMKAC 2 cut(s) 1657, 3046
Fnu4HI GCNGC 7 cut(s) 462, 1851, 3879, 3961, 3988, 4266, 4269
FokI GGATG 8 cut(s) 887, 1018, 1346, 2276, 2407, 2735, 3326, 3469
Fsp4HI GCNGC 7 cut(s) 462, 1851, 3879, 3961, 3988, 4266, 4269
GlaI GCGC 2 cut(s) 1704, 3991
GluI GCNGC 7 cut(s) 462, 1851, 3879, 3961, 3988, 4266, 4269
GsaI CCCAGC 3 cut(s) 3192, 4154, 4275
GsuI CTGGAG 1 cut(s) 3587
HaeII RGCGCY 1 cut(s) 1706
HaeIII GGCC 9 cut(s) 316, 455, 724, 1027, 1844, 2113, 2416, 3290, 3987
HapII CCGG 9 cut(s) 61, 83, 171, 620, 1000, 1142, 2009, 2389, 2531
HhaI GCGC 2 cut(s) 1705, 3992
Hin1I GRCGYC 1 cut(s) 1703
Hin6I GCGC 2 cut(s) 1703, 3990
HinP1I GCGC 2 cut(s) 1703, 3990
HincII GTYRAC 4 cut(s) 556, 1018, 1945, 2407
HindII GTYRAC 4 cut(s) 556, 1018, 1945, 2407
HpaII CCGG 9 cut(s) 61, 83, 171, 620, 1000, 1142, 2009, 2389, 2531
HphI GGTGA 4 cut(s) 800, 1636, 2189, 3025
HpyAV CCTTC 7 cut(s) 429, 1241, 1818, 2630, 3644, 4070, 4134
HpyCH4III ACNGT 4 cut(s) 1223, 2612, 3226, 3495
HpyCH4IV ACGT 7 cut(s) 690, 1263, 1541, 2079, 2652, 2930, 4176
HpyF3I CTNAG 9 cut(s) 719, 1526, 1687, 2108, 2915, 3076, 3660, 4086, 4305
HpySE526I ACGT 7 cut(s) 690, 1263, 1541, 2079, 2652, 2930, 4176
Hsp92I GRCGYC 1 cut(s) 1703
HspAI GCGC 2 cut(s) 1703, 3990
KasI GGCGCC 1 cut(s) 1702
Kpn2I TCCGGA 1 cut(s) 60
Ksp22I TGATCA 5 cut(s) 342, 447, 1731, 1836, 3316
LmnI GCTCC 5 cut(s) 470, 1589, 1859, 2978, 3606
Lsp1109I GCAGC 3 cut(s) 3865, 3972, 4280
MaeII ACGT 7 cut(s) 690, 1263, 1541, 2079, 2652, 2930, 4176
MflI RGATCY 4 cut(s) 569, 1958, 3727, 3886
MhlI GDGCHC 3 cut(s) 1572, 2961, 3661
Mly113I GGCGCC 1 cut(s) 1703
MlyI GAGTC 9 cut(s) 51, 210, 328, 800, 1103, 1717, 2189, 2492, 4151
MmeI TCCRAC 6 cut(s) 79, 325, 1614, 1649, 3003, 3038
Mph1103I ATGCAT 7 cut(s) 643, 1411, 1459, 2032, 2800, 2848, 3785
MroI TCCGGA 1 cut(s) 60
MroXI GAANNNNTTC 2 cut(s) 668, 2057
MslI CAYNNNNRTG 6 cut(s) 270, 1043, 1107, 2432, 2496, 3452
MspA1I CMGCKG 3 cut(s) 3174, 3664, 4271
MspI CCGG 9 cut(s) 61, 83, 171, 620, 1000, 1142, 2009, 2389, 2531
MspR9I CCNGG 5 cut(s) 1157, 1198, 2546, 2587, 4326
Mva1269I GAATGC 8 cut(s) 643, 946, 2032, 2335, 3244, 3538, 3580, 3760
MvaI CCWGG 5 cut(s) 1157, 1198, 2546, 2587, 4326
MvnI CGCG 3 cut(s) 869, 2258, 3990
NarI GGCGCC 1 cut(s) 1703
NcoI CCATGG 2 cut(s) 1573, 2962
NdeI CATATG 1 cut(s) 3779
NheI GCTAGC 2 cut(s) 743, 2132
NlaIV GGNNCC 7 cut(s) 630, 846, 1704, 2019, 2235, 3618, 4221
NmeAIII GCCGAG 4 cut(s) 342, 382, 1731, 1771
NmuCI GTSAC 6 cut(s) 1036, 1642, 1673, 2425, 3031, 3062
NsiI ATGCAT 7 cut(s) 643, 1411, 1459, 2032, 2800, 2848, 3785
NspI RCATGY 2 cut(s) 3363, 4244
NspV TTCGAA 1 cut(s) 3204
OliI CACNNNNGTG 2 cut(s) 1043, 2432
PaeI GCATGC 1 cut(s) 3363
PceI AGGCCT 4 cut(s) 455, 1027, 1844, 2416
PciI ACATGT 1 cut(s) 4240
PctI GAATGC 8 cut(s) 643, 946, 2032, 2335, 3244, 3538, 3580, 3760
PdmI GAANNNNTTC 2 cut(s) 668, 2057
PfeI GAWTC 9 cut(s) 669, 908, 1193, 2058, 2297, 2582, 3262, 3388, 3479
PflFI GACNNNGTC 2 cut(s) 1640, 3029
PflMI CCANNNNNTGG 1 cut(s) 4006
PkrI GCNGC 7 cut(s) 463, 1852, 3880, 3962, 3989, 4267, 4270
PleI GAGTC 9 cut(s) 51, 210, 327, 799, 1102, 1716, 2188, 2491, 4150
PluTI GGCGCC 1 cut(s) 1706
PpsI GAGTC 9 cut(s) 51, 210, 327, 799, 1102, 1716, 2188, 2491, 4150
Ppu21I YACGTR 2 cut(s) 1264, 2653
PpuMI RGGWCCY 1 cut(s) 255
PscI ACATGT 1 cut(s) 4240
PshBI ATTAAT 3 cut(s) 1553, 2942, 3846
Psp1406I AACGTT 1 cut(s) 4176
Psp5II RGGWCCY 1 cut(s) 255
Psp6I CCWGG 5 cut(s) 1155, 1196, 2544, 2585, 4324
PspEI GGTNACC 2 cut(s) 1642, 3031
PspFI CCCAGC 3 cut(s) 3188, 4150, 4271
PspGI CCWGG 5 cut(s) 1155, 1196, 2544, 2585, 4324
PspN4I GGNNCC 7 cut(s) 630, 846, 1704, 2019, 2235, 3618, 4221
PspPI GGNCC 3 cut(s) 255, 4057, 4219
PspPPI RGGWCCY 1 cut(s) 255
PstI CTGCAG 1 cut(s) 3962
PstNI CAGNNNCTG 5 cut(s) 258, 337, 1343, 1726, 2732
PsuI RGATCY 4 cut(s) 569, 1958, 3727, 3886
PsyI GACNNNGTC 2 cut(s) 1640, 3029
PvuII CAGCTG 2 cut(s) 3664, 4271
RsaI GTAC 9 cut(s) 736, 866, 1262, 1268, 2125, 2255, 2651, 2657, 3164
RsaNI GTAC 9 cut(s) 735, 865, 1261, 1267, 2124, 2254, 2650, 2656, 3163
RseI CAYNNNNRTG 6 cut(s) 270, 1043, 1107, 2432, 2496, 3452
SatI GCNGC 7 cut(s) 462, 1851, 3879, 3961, 3988, 4266, 4269
Sau96I GGNCC 3 cut(s) 255, 4057, 4219
ScaI AGTACT 2 cut(s) 736, 2125
SchI GAGTC 9 cut(s) 51, 210, 328, 800, 1103, 1717, 2189, 2492, 4151
ScrFI CCNGG 5 cut(s) 1157, 1198, 2546, 2587, 4326
SduI GDGCHC 3 cut(s) 1572, 2961, 3661
SfcI CTRYAG 3 cut(s) 912, 2301, 3958
SfoI GGCGCC 1 cut(s) 1704
SfuI TTCGAA 1 cut(s) 3204
SinI GGWCC 3 cut(s) 255, 4057, 4219
SmiMI CAYNNNNRTG 6 cut(s) 270, 1043, 1107, 2432, 2496, 3452
SmlI CTYRAG 4 cut(s) 191, 1376, 2765, 4139
SmoI CTYRAG 4 cut(s) 191, 1376, 2765, 4139
SpeI ACTAGT 2 cut(s) 545, 1934
SphI GCATGC 1 cut(s) 3363
SseBI AGGCCT 4 cut(s) 455, 1027, 1844, 2416
SspDI GGCGCC 1 cut(s) 1702
SspI AATATT 1 cut(s) 4258
StuI AGGCCT 4 cut(s) 455, 1027, 1844, 2416
StyD4I CCNGG 5 cut(s) 1155, 1196, 2544, 2585, 4324
StyI CCWWGG 5 cut(s) 145, 632, 1573, 2021, 2962
TaaI ACNGT 4 cut(s) 1223, 2612, 3226, 3495
TaiI ACGT 7 cut(s) 693, 1266, 1544, 2082, 2655, 2933, 4179
TatI WGTACW 5 cut(s) 734, 1266, 2123, 2655, 3162
TauI GCSGC 4 cut(s) 464, 1853, 3990, 4268
TfiI GAWTC 9 cut(s) 669, 908, 1193, 2058, 2297, 2582, 3262, 3388, 3479
TscAI CASTG 3 cut(s) 718, 2107, 3585
TseFI GTSAC 6 cut(s) 1036, 1642, 1673, 2425, 3031, 3062
TseI GCWGC 3 cut(s) 3878, 3960, 4268
Tsp45I GTSAC 6 cut(s) 1036, 1642, 1673, 2425, 3031, 3062
TspGWI ACGGA 6 cut(s) 429, 1598, 1602, 1818, 2987, 2991
TspRI CASTG 3 cut(s) 718, 2107, 3585
Tth111I GACNNNGTC 2 cut(s) 1640, 3029
Van91I CCANNNNNTGG 1 cut(s) 4006
VneI GTGCAC 2 cut(s) 1568, 2957
VpaK11BI GGWCC 3 cut(s) 255, 4057, 4219
VspI ATTAAT 3 cut(s) 1553, 2942, 3846
XceI RCATGY 2 cut(s) 3363, 4244
XcmI CCANNNNNNNNNTGG 1 cut(s) 3223
XmiI GTMKAC 2 cut(s) 1657, 3046
XmnI GAANNNNTTC 2 cut(s) 668, 2057
ZrmI AGTACT 2 cut(s) 736, 2125
Zsp2I ATGCAT 7 cut(s) 643, 1411, 1459, 2032, 2800, 2848, 3785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.