Rmu_sc0001067.1_g000001

WD repeat-containing protein C2A9.03-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001067.1
OG0003717
Physical Location & Seq
Forward (+)
1252 .. 7015
5764 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1308 bp
atggcttttgagcagcctcatcagtttgaatatatggcggatgagggtgacatgtctgatttcgttgaggacgcagatgtagatgctgatgaagaaaatcatggtagagatatggttcttgacgaatacgacatgcttaaccaggtgtcggatacgtcttctgcccaagcaagaaaaggaaaggatattcagggtattccgtgggataggttaaacataacgagggagaagtacagattgacgaggcttgaacagtacaagaattatgagaatatcccttcatctggggaagctgtggacaaggaatgtcaactaatgcagaagggtggcaactactatgaattcttccacaacacaagactggttaaacctacaatccttcattttcagctcagaaatctggtttgggctacttcaaaacatgacgtctatctcatgtccaattattcagttatgcattggtcttctctatctagcaatttgtctgaggtcctcaatttttcaggacatgttgcaccaactgagaaacatgcaggaagtttgttggagggttttatgcagactcagataagcaccctagcagtcaaggacaattttcttgttgctggaggtttccaaggagagcttacttgcaagcgtcttgataaagaaggagtgagtttttgtacgcgaaccacatacgatgacaatgccatcacaaatgctgttgaaatatatgatagcctggcgggtggaatgcatttcatggcatccaataatgattgtggtataagagaatatgacatggagagatttcagcttctgaatcactttcgattcccctggccagtgaatcatacatcaataagccccgatcgtagggttgttgccgtagttggagatcacgtggatggattgcttatggattctcagaatggaaagactattgctaaggttgttggtcatctagattactcctttgcttctgcatggcatcccgatggccgcatatttgccaccggaaatcaggacaagacttcccgagtttgggatataagaaatctttcatcacccattgcagttctgaagaataacttgggtgctactcggtctattcggttttcatcagatggtcagtttatgatggttgcagaacctgcagattttgacatcgatgtgatgctatttgaaagtttgtgctgcaatgtagcgatgaggagcaacgttttcgggtggcgatggacgtttgtcgtttcctctagtcgacgaggtcattcaagtttgttgcagcagcgccgatggaggtggatctcaggtatgagtgtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

435

Amino Acids

49.58

Weight (kDa)

5.52

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 245 - 390 1.1e-14 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 246 - 384 9.2e-10 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5 PF25175 248 - 376 2.5e-10 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 248 - 377 4.4e-08 Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta PF25391 249 - 386 3.1e-06 G protein beta WD-40 repeat protein
WD40_Prp19 PF24814 275 - 378 1.9e-12 Prp19 WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 429
Acc36I ACCTGC 1 cut(s) 1144
AccI GTMKAC 1 cut(s) 1243
AccII CGCG 1 cut(s) 670
AciI CCGC 3 cut(s) 38, 728, 985
AclI AACGTT 1 cut(s) 1203
AclWI GGATC 1 cut(s) 1295
AcoI YGGCCR 2 cut(s) 824, 982
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 1085
AcvI CACGTG 1 cut(s) 886
AcyI GRCGYC 1 cut(s) 426
AfaI GTAC 3 cut(s) 233, 257, 667
AfiI CCNNNNNNNGG 5 cut(s) 148, 284, 858, 1026, 1027
AflIII ACRYGT 2 cut(s) 51, 508
AgsI TTSAA 6 cut(s) 29, 251, 417, 710, 1169, 1257
AjnI CCWGG 3 cut(s) 141, 723, 821
AjuI GAANNNNNNNTTGG 4 cut(s) 388, 420, 1058, 1090
AluBI AGCT 4 cut(s) 293, 391, 625, 799
AluI AGCT 4 cut(s) 293, 391, 625, 799
AlwI GGATC 1 cut(s) 1295
AlwNI CAGNNNCTG 2 cut(s) 802, 1136
Ama87I CYCGRG 1 cut(s) 1020
AoxI GGCC 2 cut(s) 824, 982
ApeKI GCWGC 4 cut(s) 13, 1179, 1267, 1270
ApoI RAATTY 1 cut(s) 341
Asp700I GAANNNNTTC 1 cut(s) 1042
AspLEI GCGC 1 cut(s) 1275
AspS9I GGNCC 1 cut(s) 490
AsuHPI GGTGA 2 cut(s) 59, 1041
AvaI CYCGRG 1 cut(s) 1020
AvaII GGWCC 1 cut(s) 490
BalI TGGCCA 1 cut(s) 826
BbrPI CACGTG 1 cut(s) 886
BbsI GAAGAC 2 cut(s) 150, 456
BbvI GCAGC 4 cut(s) 25, 1166, 1279, 1282
BccI CCATC 7 cut(s) 701, 884, 974, 1103, 1117, 1212, 1272
BceAI ACGGC 1 cut(s) 854
BcgI CGANNNNNNTGC 4 cut(s) 671, 705, 1189, 1223
BciT130I CCWGG 3 cut(s) 143, 725, 823
BciVI GTATCC 1 cut(s) 145
BfaI CTAG 4 cut(s) 474, 578, 947, 1239
BfmI CTRYAG 1 cut(s) 1137
BfoI RGCGCY 1 cut(s) 1276
BfuAI ACCTGC 1 cut(s) 1144
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 5 cut(s) 14, 985, 1180, 1268, 1271
BlsI GCNGC 5 cut(s) 15, 986, 1181, 1269, 1272
Bme1390I CCNGG 3 cut(s) 143, 725, 823
Bme18I GGWCC 1 cut(s) 490
BmeT110I CYCGRG 1 cut(s) 1020
BmgT120I GGNCC 1 cut(s) 490
BmrFI CCNGG 3 cut(s) 143, 725, 823
BmsI GCATC 4 cut(s) 73, 758, 982, 1149
BoxI GACNNNNGTC 1 cut(s) 1226
BpiI GAAGAC 2 cut(s) 150, 456
BpmI CTGGAG 1 cut(s) 627
Bpu10I CCTNAGC 1 cut(s) 930
Bsa29I ATCGAT 1 cut(s) 1152
BsaAI YACGTR 1 cut(s) 886
BsaHI GRCGYC 1 cut(s) 426
BsaJI CCNNGG 3 cut(s) 200, 616, 821
BsaWI WCCGGW 1 cut(s) 998
BsaXI ACNNNNNCTCC 2 cut(s) 870, 900
Bsc4I CCNNNNNNNGG 5 cut(s) 148, 284, 858, 1026, 1027
Bse1I ACTGG 2 cut(s) 366, 827
Bse3DI GCAATG 2 cut(s) 1053, 1189
BseBI CCWGG 3 cut(s) 143, 725, 823
BseCI ATCGAT 1 cut(s) 1152
BseDI CCNNGG 3 cut(s) 200, 616, 821
BseGI GGATG 4 cut(s) 46, 749, 895, 973
BseLI CCNNNNNNNGG 5 cut(s) 148, 284, 858, 1026, 1027
BseMI GCAATG 2 cut(s) 1053, 1189
BseMII CTCAG 6 cut(s) 406, 477, 513, 578, 923, 1305
BseNI ACTGG 2 cut(s) 366, 827
BseRI GAGGAG 1 cut(s) 1210
BseXI GCAGC 4 cut(s) 25, 1166, 1279, 1282
Bsh1236I CGCG 1 cut(s) 670
Bsh1285I CGRYCG 1 cut(s) 856
BshFI GGCC 2 cut(s) 826, 984
BshVI ATCGAT 1 cut(s) 1152
BsiEI CGRYCG 1 cut(s) 856
BsiHKCI CYCGRG 1 cut(s) 1020
BsiSI CCGG 1 cut(s) 999
BslI CCNNNNNNNGG 5 cut(s) 148, 284, 858, 1026, 1027
BsmI GAATGC 1 cut(s) 741
BsnI GGCC 2 cut(s) 826, 984
BsoBI CYCGRG 1 cut(s) 1020
Bsp143I GATC 3 cut(s) 853, 880, 1287
BspACI CCGC 3 cut(s) 38, 728, 985
BspANI GGCC 2 cut(s) 826, 984
BspCNI CTCAG 6 cut(s) 405, 478, 514, 577, 922, 1304
BspDI ATCGAT 1 cut(s) 1152
BspFNI CGCG 1 cut(s) 670
BspMAI CTGCAG 1 cut(s) 1141
BspMI ACCTGC 1 cut(s) 1144
BspPI GGATC 1 cut(s) 1295
BsrDI GCAATG 2 cut(s) 1053, 1189
BsrI ACTGG 2 cut(s) 366, 827
BssECI CCNNGG 3 cut(s) 200, 616, 821
BssMI GATC 3 cut(s) 853, 880, 1287
BssNI GRCGYC 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 616
Bst2UI CCWGG 3 cut(s) 143, 725, 823
Bst4CI ACNGT 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 426
BstAPI GCANNNNNTGC 1 cut(s) 1136
BstBAI YACGTR 1 cut(s) 886
BstC8I GCNNGC 1 cut(s) 635
BstDEI CTNAG 7 cut(s) 392, 486, 522, 564, 909, 930, 1291
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 4 cut(s) 46, 749, 895, 973
BstFNI CGCG 1 cut(s) 670
BstH2I RGCGCY 1 cut(s) 1276
BstHHI GCGC 1 cut(s) 1275
BstKTI GATC 3 cut(s) 856, 883, 1290
BstMBI GATC 3 cut(s) 853, 880, 1287
BstMCI CGRYCG 1 cut(s) 856
BstMWI GCNNNNNNNGC 1 cut(s) 1136
BstNI CCWGG 3 cut(s) 143, 725, 823
BstNSI RCATGY 4 cut(s) 55, 136, 512, 533
BstPAI GACNNNNGTC 1 cut(s) 1226
BstSCI CCNGG 3 cut(s) 141, 723, 821
BstSFI CTRYAG 1 cut(s) 1137
BstUI CGCG 1 cut(s) 670
BstV1I GCAGC 4 cut(s) 25, 1166, 1279, 1282
BstV2I GAAGAC 2 cut(s) 150, 456
BstX2I RGATCY 1 cut(s) 1287
BstYI RGATCY 1 cut(s) 1287
Bsu15I ATCGAT 1 cut(s) 1152
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 2 cut(s) 826, 984
BsuTUI ATCGAT 1 cut(s) 1152
BtgI CCRYGG 1 cut(s) 200
BtgZI GCGATG 2 cut(s) 1205, 1231
BtsCI GGATG 4 cut(s) 46, 749, 895, 973
BtsIMutI CAGTG 1 cut(s) 834
BveI ACCTGC 1 cut(s) 1144
Cac8I GCNNGC 1 cut(s) 635
CaiI CAGNNNCTG 2 cut(s) 802, 1136
CfoI GCGC 1 cut(s) 1275
Cfr13I GGNCC 1 cut(s) 490
ClaI ATCGAT 1 cut(s) 1152
CseI GACGC 2 cut(s) 80, 626
CsiI ACCWGGT 1 cut(s) 141
Csp6I GTAC 3 cut(s) 232, 256, 666
CviQI GTAC 3 cut(s) 232, 256, 666
DdeI CTNAG 7 cut(s) 392, 486, 522, 564, 909, 930, 1291
DpnI GATC 3 cut(s) 855, 882, 1289
DpnII GATC 3 cut(s) 853, 880, 1287
EaeI YGGCCR 2 cut(s) 824, 982
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 490
Eco57I CTGAAG 1 cut(s) 1085
Eco72I CACGTG 1 cut(s) 886
Eco88I CYCGRG 1 cut(s) 1020
EcoO109I RGGNCCY 1 cut(s) 490
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 3 cut(s) 141, 723, 821
EcoT14I CCWWGG 1 cut(s) 616
EcoT22I ATGCAT 2 cut(s) 459, 741
ErhI CCWWGG 1 cut(s) 616
FalI AAGNNNNNCTT 4 cut(s) 609, 641, 1058, 1090
FauI CCCGC 1 cut(s) 721
FblI GTMKAC 1 cut(s) 1243
Fnu4HI GCNGC 5 cut(s) 14, 985, 1180, 1268, 1271
FokI GGATG 4 cut(s) 53, 736, 902, 960
Fsp4HI GCNGC 5 cut(s) 14, 985, 1180, 1268, 1271
FspBI CTAG 4 cut(s) 474, 578, 947, 1239
GlaI GCGC 1 cut(s) 1274
GluI GCNGC 5 cut(s) 14, 985, 1180, 1268, 1271
GsuI CTGGAG 1 cut(s) 627
HaeII RGCGCY 1 cut(s) 1276
HaeIII GGCC 2 cut(s) 826, 984
HapII CCGG 1 cut(s) 999
HgaI GACGC 2 cut(s) 80, 626
HhaI GCGC 1 cut(s) 1275
Hin1I GRCGYC 1 cut(s) 426
Hin6I GCGC 1 cut(s) 1273
HinP1I GCGC 1 cut(s) 1273
HincII GTYRAC 2 cut(s) 311, 1244
HindII GTYRAC 2 cut(s) 311, 1244
HinfI GANTC 5 cut(s) 562, 805, 816, 832, 905
HpaII CCGG 1 cut(s) 999
HphI GGTGA 2 cut(s) 59, 1041
Hpy166II GTNNAC 3 cut(s) 298, 311, 1244
Hpy188I TCNGA 9 cut(s) 58, 151, 395, 487, 567, 804, 912, 1065, 1108
Hpy188III TCNNGA 7 cut(s) 119, 504, 641, 947, 977, 1007, 1020
Hpy8I GTNNAC 3 cut(s) 298, 311, 1244
Hpy99I CGWCG 1 cut(s) 1248
HpyAV CCTTC 4 cut(s) 288, 316, 389, 644
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4IV ACGT 5 cut(s) 155, 426, 885, 1203, 1223
HpyF10VI GCNNNNNNNGC 1 cut(s) 1136
HpyF3I CTNAG 7 cut(s) 392, 486, 522, 564, 909, 930, 1291
HpySE526I ACGT 5 cut(s) 155, 426, 885, 1203, 1223
Hsp92I GRCGYC 1 cut(s) 426
HspAI GCGC 1 cut(s) 1273
Kzo9I GATC 3 cut(s) 853, 880, 1287
LmnI GCTCC 1 cut(s) 1197
Lsp1109I GCAGC 4 cut(s) 25, 1166, 1279, 1282
LweI GCATC 4 cut(s) 73, 758, 982, 1149
MabI ACCWGGT 1 cut(s) 141
MaeI CTAG 4 cut(s) 474, 578, 947, 1239
MaeII ACGT 5 cut(s) 155, 426, 885, 1203, 1223
MaeIII GTNAC 1 cut(s) 47
MalI GATC 3 cut(s) 855, 882, 1289
MboI GATC 3 cut(s) 853, 880, 1287
MboII GAAGA 5 cut(s) 104, 150, 337, 456, 1078
MflI RGATCY 1 cut(s) 1287
MlsI TGGCCA 1 cut(s) 826
MluCI AATT 6 cut(s) 262, 341, 442, 478, 496, 592
MluNI TGGCCA 1 cut(s) 826
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 3 cut(s) 129, 525, 856
Mox20I TGGCCA 1 cut(s) 826
Mph1103I ATGCAT 2 cut(s) 459, 741
MroXI GAANNNNTTC 1 cut(s) 1042
MscI TGGCCA 1 cut(s) 826
MseI TTAA 3 cut(s) 138, 212, 366
MslI CAYNNNNRTG 3 cut(s) 888, 978, 1154
Msp20I TGGCCA 1 cut(s) 826
MspI CCGG 1 cut(s) 999
MspR9I CCNGG 3 cut(s) 143, 725, 823
Mva1269I GAATGC 1 cut(s) 741
MvaI CCWGG 3 cut(s) 143, 725, 823
MvnI CGCG 1 cut(s) 670
MwoI GCNNNNNNNGC 1 cut(s) 1136
NdeII GATC 3 cut(s) 853, 880, 1287
NmuCI GTSAC 1 cut(s) 47
NsiI ATGCAT 2 cut(s) 459, 741
NspI RCATGY 4 cut(s) 55, 136, 512, 533
PciI ACATGT 2 cut(s) 51, 508
PctI GAATGC 1 cut(s) 741
PdmI GAANNNNTTC 1 cut(s) 1042
PfeI GAWTC 4 cut(s) 805, 816, 832, 905
PflFI GACNNNGTC 1 cut(s) 1248
PkrI GCNGC 5 cut(s) 15, 986, 1181, 1269, 1272
Ple19I CGATCG 1 cut(s) 856
PleI GAGTC 1 cut(s) 556
PmaCI CACGTG 1 cut(s) 886
PmlI CACGTG 1 cut(s) 886
PpsI GAGTC 1 cut(s) 556
Ppu21I YACGTR 1 cut(s) 886
PpuMI RGGWCCY 1 cut(s) 490
PscI ACATGT 2 cut(s) 51, 508
PshAI GACNNNNGTC 1 cut(s) 1226
Psp1406I AACGTT 1 cut(s) 1203
Psp5II RGGWCCY 1 cut(s) 490
Psp6I CCWGG 3 cut(s) 141, 723, 821
PspCI CACGTG 1 cut(s) 886
PspGI CCWGG 3 cut(s) 141, 723, 821
PspPI GGNCC 1 cut(s) 490
PspPPI RGGWCCY 1 cut(s) 490
PstI CTGCAG 1 cut(s) 1141
PstNI CAGNNNCTG 2 cut(s) 802, 1136
PsuI RGATCY 1 cut(s) 1287
PsyI GACNNNGTC 1 cut(s) 1248
PvuI CGATCG 1 cut(s) 856
RsaI GTAC 3 cut(s) 233, 257, 667
RsaNI GTAC 3 cut(s) 232, 256, 666
RseI CAYNNNNRTG 3 cut(s) 888, 978, 1154
SalI GTCGAC 1 cut(s) 1242
SaqAI TTAA 3 cut(s) 138, 212, 366
SatI GCNGC 5 cut(s) 14, 985, 1180, 1268, 1271
Sau3AI GATC 3 cut(s) 853, 880, 1287
Sau96I GGNCC 1 cut(s) 490
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 3 cut(s) 143, 725, 823
SexAI ACCWGGT 1 cut(s) 141
SfaNI GCATC 4 cut(s) 73, 758, 982, 1149
SfcI CTRYAG 1 cut(s) 1137
SinI GGWCC 1 cut(s) 490
SmiMI CAYNNNNRTG 3 cut(s) 888, 978, 1154
Sse9I AATT 6 cut(s) 262, 341, 442, 478, 496, 592
SsiI CCGC 3 cut(s) 38, 728, 985
SspMI CTAG 4 cut(s) 474, 578, 947, 1239
StyD4I CCNGG 3 cut(s) 141, 723, 821
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 1 cut(s) 255
TaiI ACGT 5 cut(s) 158, 429, 888, 1206, 1226
TaqI TCGA 3 cut(s) 814, 1152, 1243
TaqII GACCGA 1 cut(s) 1077
TasI AATT 6 cut(s) 262, 341, 442, 478, 496, 592
TatI WGTACW 2 cut(s) 231, 255
TauI GCSGC 1 cut(s) 987
TfiI GAWTC 4 cut(s) 805, 816, 832, 905
Tru1I TTAA 3 cut(s) 138, 212, 366
Tru9I TTAA 3 cut(s) 138, 212, 366
TscAI CASTG 1 cut(s) 834
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 4 cut(s) 13, 1179, 1267, 1270
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 7 cut(s) 105, 270, 354, 371, 733, 1035, 1092
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 1 cut(s) 834
Tth111I GACNNNGTC 1 cut(s) 1248
VpaK11BI GGWCC 1 cut(s) 490
XapI RAATTY 1 cut(s) 341
XbaI TCTAGA 1 cut(s) 946
XceI RCATGY 4 cut(s) 55, 136, 512, 533
XmiI GTMKAC 1 cut(s) 1243
XmnI GAANNNNTTC 1 cut(s) 1042
XspI CTAG 4 cut(s) 474, 578, 947, 1239
ZraI GACGTC 1 cut(s) 427
Zsp2I ATGCAT 2 cut(s) 459, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.