Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001070.1

Orthogroup ID

OG0014836

Physical Location & Seq

Genomic Coordinates Reverse (-)

102220 .. 102423

Gene Structure 204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

atgatcttgactccttccgatgctaacaatggcgatggtttctctgtccccaggttctgtgctgactcgattttcccgccgcttaactaccaggctgagccgccggtccagacgctctccgtcaccgacctgcacggcggcggttgggacttccgccacatctaccgccgaactccccggcgtcacttgctcaccaccggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

67

Amino Acids

7.51

Weight (kDa)

6.81

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	2 - 67	3.7e-09	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014836)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g12230
rosa_laevigata	RLG00000032395 RLG00000032400
rosa_multiflora	Rmu_sc0001070.1_g000019 Rmu_sc0001405.1_g000042 Rmu_sc0029984.1_g000001 Rmu_ssc0000139.1_g000011
rosa_roxburghii	Rroxscaffold_1G00058990 Rroxscaffold_5G00346380 Rroxscaffold_5G00346390
rosa_rugosa	Rorug02G0178500 Rorug05G0046700 Rorug06G0177400
rosa_samantha	Rh2CG235000 Rh5BG137100 Rh6CG459300 Rh6DG446200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	138
AciI	CCGC	7 cut(s)	77, 80, 101, 138, 141, 154, 166
AcyI	GRCGYC	1 cut(s)	181
AjnI	CCWGG	2 cut(s)	50, 90
AlwNI	CAGNNNCTG	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	115, 184
AvaII	GGWCC	1 cut(s)	106
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	52, 92
BcnI	CCSGG	1 cut(s)	178
BfuAI	ACCTGC	1 cut(s)	138
BisI	GCNGC	3 cut(s)	80, 101, 139
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	3 cut(s)	81, 102, 140
Bme1390I	CCNGG	3 cut(s)	52, 92, 178
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmrFI	CCNGG	3 cut(s)	52, 92, 178
BmsI	GCATC	1 cut(s)	10
Bpu1102I	GCTNAGC	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	178
BsaHI	GRCGYC	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	50, 176
Bse118I	RCCGGY	2 cut(s)	103, 197
BseBI	CCWGG	2 cut(s)	52, 92
BseDI	CCNNGG	2 cut(s)	50, 176
BseMII	CTCAG	1 cut(s)	87
BsgI	GTGCAG	1 cut(s)	116
BsiSI	CCGG	3 cut(s)	104, 178, 198
BslFI	GGGAC	2 cut(s)	32, 161
BsmFI	GGGAC	2 cut(s)	32, 161
Bsp143I	GATC	1 cut(s)	3
Bsp1720I	GCTNAGC	1 cut(s)	96
BspACI	CCGC	7 cut(s)	77, 80, 101, 138, 141, 154, 166
BspCNI	CTCAG	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	138
BsrFI	RCCGGY	2 cut(s)	103, 197
BssAI	RCCGGY	2 cut(s)	103, 197
BssECI	CCNNGG	2 cut(s)	50, 176
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	1 cut(s)	181
Bst2UI	CCWGG	2 cut(s)	52, 92
BstACI	GRCGYC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	96
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	2 cut(s)	52, 92
BstSCI	CCNGG	3 cut(s)	50, 90, 176
BtgZI	GCGATG	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	138
CaiI	CAGNNNCTG	1 cut(s)	57
Cfr10I	RCCGGY	2 cut(s)	103, 197
Cfr13I	GGNCC	1 cut(s)	106
CseI	GACGC	2 cut(s)	121, 170
CviJI	RGCY	3 cut(s)	95, 100, 201
CviKI_1	RGCY	3 cut(s)	95, 100, 201
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	50, 90
FaqI	GGGAC	2 cut(s)	32, 161
FauI	CCCGC	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	80, 101, 139
Fsp4HI	GCNGC	3 cut(s)	80, 101, 139
GluI	GCNGC	3 cut(s)	80, 101, 139
HapII	CCGG	3 cut(s)	104, 178, 198
HgaI	GACGC	2 cut(s)	121, 170
Hin1I	GRCGYC	1 cut(s)	181
HinfI	GANTC	2 cut(s)	10, 65
HpaII	CCGG	3 cut(s)	104, 178, 198
HphI	GGTGA	2 cut(s)	115, 184
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	2 cut(s)	7, 109
HpyAV	CCTTC	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	133
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	8 cut(s)	37, 64, 77, 104, 117, 122, 143, 191
LweI	GCATC	1 cut(s)	10
MaeIII	GTNAC	2 cut(s)	121, 182
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MlyI	GAGTC	2 cut(s)	4, 59
MseI	TTAA	1 cut(s)	84
MspI	CCGG	3 cut(s)	104, 178, 198
MspR9I	CCNGG	3 cut(s)	52, 92, 178
MvaI	CCWGG	2 cut(s)	52, 92
MwoI	GCNNNNNNNGC	1 cut(s)	187
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	1 cut(s)	3
NmuCI	GTSAC	2 cut(s)	121, 182
PkrI	GCNGC	3 cut(s)	81, 102, 140
PleI	GAGTC	2 cut(s)	4, 59
PpsI	GAGTC	2 cut(s)	4, 59
Psp6I	CCWGG	2 cut(s)	50, 90
PspGI	CCWGG	2 cut(s)	50, 90
PspPI	GGNCC	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	3 cut(s)	80, 101, 139
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	2 cut(s)	4, 59
ScrFI	CCNGG	3 cut(s)	52, 92, 178
SetI	ASST	2 cut(s)	56, 132
SfaNI	GCATC	1 cut(s)	10
SinI	GGWCC	1 cut(s)	106
SsiI	CCGC	7 cut(s)	77, 80, 101, 138, 141, 154, 166
StyD4I	CCNGG	3 cut(s)	50, 90, 176
TaqI	TCGA	1 cut(s)	68
TauI	GCSGC	3 cut(s)	82, 103, 141
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseFI	GTSAC	2 cut(s)	121, 182
Tsp45I	GTSAC	2 cut(s)	121, 182
TspGWI	ACGGA	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.