Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001084.1

Orthogroup ID

OG0002795

Physical Location & Seq

Genomic Coordinates Reverse (-)

82255 .. 84273

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atggcagaaaaggacgattctttctttattgtgagggatgatttgttgcatccgttgataaatgggaataaagcaagaaaattggatgcattgattccccttgttgaagatcattccgtgactgatgtggtgacatgtggaggttgtcaaagtgcccatacagcagctgttgccgtttcatgttcagaaagaggattaaaaccgcatttacttctacgaggggagcagcctgaaatactgacaggctataacttgatgtcaacaatatatggcaatgtcacatatgttccaagatcgctttatgccaatagggaaaagatgttaaagagccatgctgattatttggcaggcagtagtggtaacgtcctttggtttgatgatattttggaggcctctttgaatcaaagtgatggtgctctgaatcttttgcaaaaggatgccaatagaagagaccatcctcggaaaattgtaattgtcaatgaaggcgcaggagatgttgtagcattactaggtctgattcgcctagcgcagtacttatcccagaatcacttacttggaaaagagagggtcttgaagtttgttgtagattctggaactgggacaacagctgttggtttagctcttggagccatatgtttggggctcccatgggaggtaactgcagtgatgttggctgattcatatgatgggtacagacatcaggagaagcgcttgatatccaattttaagaggcattttgatactcatattgattactgcttcgatgatatagacaaaggaatagtgcactgggtagaacgttgccacccgagaaaatttggcaatgtattggaaggggaattagaggcatgccaacatattgcacaacaaactggtattttagtcgacccagtttacacactttctgcttgggagatggcaatggcccttcataaaaaggaagcagaagttgaaggaggtgtacaagtggtcatgctccacactggaggcactctaggcatgtttggattagcacagaggtacaaatcttacttctccaagctcaaagttggatcatccagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009987 GO:0016054 GO:0016829 GO:0016846 GO:0019148 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044282 GO:0046395 GO:0071704 GO:0080146 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

PALP

Protein Analysis

354

Amino Acids

39.06

Weight (kDa)

6.2

Isoelectric Point (pI)

27.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	10 - 329	4.7e-09	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26115 AT3G26115 AT3G26115 AT3G26115 AT3G26115
fragaria_vesca	FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240
malus_domestica	MD13G1105700.v1.1
prunus_persica	Prupe.1G240700_v2.0.a1 Prupe.1G240700_v2.0.a1
pyrus_communis	pycom13g09170
rosa_chinensis	RchiOBHm_Chr4g0432431
rosa_laevigata	RLG00000006843
rosa_multiflora	Rmu_co8266185.1_g000001 Rmu_sc0001084.1_g000019 Rmu_sc0016445.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239550 Rroxscaffold_5G00373910
rosa_rugosa	Rorug04G0258700 Rorug04G0258800.1 Rorug04G0258900.1
rosa_samantha	Rh4AG314200 Rh4BG322000 Rh4CG337100 Rh4DG317700 Rh7BG357300
rosa_wichuraiana	Rw4G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	885
AciI	CCGC	1 cut(s)	203
AclI	AACGTT	1 cut(s)	799
AclWI	GGATC	1 cut(s)	1060
AcsI	RAATTY	1 cut(s)	815
AfaI	GTAC	4 cut(s)	533, 692, 963, 1022
AfeI	AGCGCT	1 cut(s)	710
AfiI	CCNNNNNNNGG	1 cut(s)	652
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	4 cut(s)	107, 400, 574, 953
AluBI	AGCT	4 cut(s)	167, 608, 620, 1042
AluI	AGCT	4 cut(s)	167, 608, 620, 1042
Alw21I	GWGCWC	2 cut(s)	418, 789
Alw26I	GTCTC	1 cut(s)	444
Alw44I	GTGCAC	1 cut(s)	785
AlwI	GGATC	1 cut(s)	1060
AlwNI	CAGNNNCTG	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	808
Aor51HI	AGCGCT	1 cut(s)	710
AoxI	GGCC	2 cut(s)	390, 924
ApaLI	GTGCAC	1 cut(s)	785
ApeKI	GCWGC	2 cut(s)	164, 226
ApoI	RAATTY	1 cut(s)	815
AspLEI	GCGC	3 cut(s)	488, 529, 711
AspS9I	GGNCC	1 cut(s)	925
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	808
BaeGI	GKGCMC	2 cut(s)	157, 789
BanII	GRGCYC	1 cut(s)	645
BarI	GAAGNNNNNNTAC	2 cut(s)	945, 977
Bbv12I	GWGCWC	2 cut(s)	418, 789
BbvI	GCAGC	2 cut(s)	176, 238
BccI	CCATC	4 cut(s)	404, 462, 680, 910
BceAI	ACGGC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	444
BfaI	CTAG	3 cut(s)	509, 524, 995
BfmI	CTRYAG	1 cut(s)	660
BfoI	RGCGCY	1 cut(s)	712
BisI	GCNGC	2 cut(s)	165, 227
BlsI	GCNGC	2 cut(s)	166, 228
BmcAI	AGTACT	1 cut(s)	533
BmeT110I	CYCGRG	1 cut(s)	808
BmgT120I	GGNCC	1 cut(s)	925
BmiI	GGNNCC	2 cut(s)	628, 644
BmrI	ACTGGG	3 cut(s)	606, 799, 884
BmsI	GCATC	3 cut(s)	58, 76, 427
BmuI	ACTGGG	3 cut(s)	606, 799, 884
BpmI	CTGGAG	1 cut(s)	1005
BsaI	GGTCTC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	458, 647
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse1I	ACTGG	6 cut(s)	601, 794, 877, 890, 988, 1059
Bse3DI	GCAATG	3 cut(s)	280, 829, 927
BseDI	CCNNGG	2 cut(s)	458, 647
BseGI	GGATG	6 cut(s)	43, 49, 91, 442, 454, 1055
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseMI	GCAATG	3 cut(s)	280, 829, 927
BseNI	ACTGG	6 cut(s)	601, 794, 877, 890, 988, 1059
BseSI	GKGCMC	2 cut(s)	157, 789
BseXI	GCAGC	2 cut(s)	176, 238
BshFI	GGCC	2 cut(s)	392, 926
BsiHKAI	GWGCWC	2 cut(s)	418, 789
BsiHKCI	CYCGRG	1 cut(s)	808
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	1 cut(s)	652
BsmAI	GTCTC	1 cut(s)	444
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	2 cut(s)	392, 926
Bso31I	GGTCTC	1 cut(s)	444
BsoBI	CYCGRG	1 cut(s)	808
Bsp1286I	GDGCHC	4 cut(s)	157, 418, 645, 789
Bsp1407I	TGTACA	1 cut(s)	961
Bsp143I	GATC	3 cut(s)	109, 293, 1052
Bsp19I	CCATGG	1 cut(s)	647
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	2 cut(s)	392, 926
BspLI	GGNNCC	2 cut(s)	628, 644
BspMAI	CTGCAG	1 cut(s)	664
BspPI	GGATC	1 cut(s)	1060
BspTNI	GGTCTC	1 cut(s)	444
BsrDI	GCAATG	3 cut(s)	280, 829, 927
BsrGI	TGTACA	1 cut(s)	961
BsrI	ACTGG	6 cut(s)	601, 794, 877, 890, 988, 1059
BssECI	CCNNGG	2 cut(s)	458, 647
BssMI	GATC	3 cut(s)	109, 293, 1052
BssT1I	CCWWGG	1 cut(s)	647
Bst6I	CTCTTC	1 cut(s)	442
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	961
BstC8I	GCNNGC	2 cut(s)	349, 850
BstDSI	CCRYGG	1 cut(s)	647
BstF5I	GGATG	6 cut(s)	43, 49, 91, 442, 454, 1055
BstH2I	RGCGCY	1 cut(s)	712
BstHHI	GCGC	3 cut(s)	488, 529, 711
BstKTI	GATC	3 cut(s)	112, 296, 1055
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	3 cut(s)	109, 293, 1052
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 170, 626, 996
BstNSI	RCATGY	3 cut(s)	138, 852, 1003
BstSFI	CTRYAG	1 cut(s)	660
BstSLI	GKGCMC	2 cut(s)	157, 789
BstV1I	GCAGC	2 cut(s)	176, 238
BstXI	CCANNNNNNTGG	1 cut(s)	637
BsuRI	GGCC	2 cut(s)	392, 926
BtgI	CCRYGG	1 cut(s)	647
BtsCI	GGATG	6 cut(s)	43, 49, 91, 442, 454, 1055
BtsI	GCAGTG	1 cut(s)	669
BtsIMutI	CAGTG	3 cut(s)	669, 787, 981
Cac8I	GCNNGC	2 cut(s)	349, 850
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	3 cut(s)	488, 529, 711
Cfr13I	GGNCC	1 cut(s)	925
Csp6I	GTAC	4 cut(s)	532, 691, 962, 1021
CviAII	CATG	7 cut(s)	135, 180, 332, 648, 849, 973, 1000
CviQI	GTAC	4 cut(s)	532, 691, 962, 1021
DpnI	GATC	3 cut(s)	111, 295, 1054
DpnII	GATC	3 cut(s)	109, 293, 1052
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	647
Eco147I	AGGCCT	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	645
Eco31I	GGTCTC	1 cut(s)	444
Eco32I	GATATC	1 cut(s)	717
Eco47III	AGCGCT	1 cut(s)	710
Eco88I	CYCGRG	1 cut(s)	808
EcoRV	GATATC	1 cut(s)	717
EcoT14I	CCWWGG	1 cut(s)	647
EcoT22I	ATGCAT	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	647
FaeI	CATG	7 cut(s)	138, 183, 335, 651, 852, 976, 1003
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	7 cut(s)	134, 179, 331, 647, 848, 972, 999
FauNDI	CATATG	3 cut(s)	283, 632, 682
FblI	GTMKAC	1 cut(s)	885
Fnu4HI	GCNGC	2 cut(s)	165, 227
FokI	GGATG	6 cut(s)	36, 50, 98, 441, 449, 1042
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	2 cut(s)	165, 227
FspBI	CTAG	3 cut(s)	509, 524, 995
GlaI	GCGC	3 cut(s)	487, 528, 710
GluI	GCNGC	2 cut(s)	165, 227
GsuI	CTGGAG	1 cut(s)	1005
HaeII	RGCGCY	1 cut(s)	712
HaeIII	GGCC	2 cut(s)	392, 926
HhaI	GCGC	3 cut(s)	488, 529, 711
Hin1II	CATG	7 cut(s)	138, 183, 335, 651, 852, 976, 1003
Hin6I	GCGC	3 cut(s)	486, 527, 709
HinP1I	GCGC	3 cut(s)	486, 527, 709
HincII	GTYRAC	2 cut(s)	261, 886
HindII	GTYRAC	2 cut(s)	261, 886
HinfI	GANTC	8 cut(s)	17, 94, 400, 421, 517, 544, 587, 677
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	5 cut(s)	261, 787, 886, 895, 962
Hpy188I	TCNGA	4 cut(s)	187, 420, 462, 516
Hpy188III	TCNNGA	3 cut(s)	571, 591, 701
Hpy8I	GTNNAC	5 cut(s)	261, 787, 886, 895, 962
HpyAV	CCTTC	4 cut(s)	476, 827, 938, 947
HpyCH4IV	ACGT	2 cut(s)	363, 799
HpyCH4V	TGCA	6 cut(s)	49, 89, 430, 662, 787, 863
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 170, 626, 996
HpySE526I	ACGT	2 cut(s)	363, 799
Hsp92II	CATG	7 cut(s)	138, 183, 335, 651, 852, 976, 1003
HspAI	GCGC	3 cut(s)	486, 527, 709
Kzo9I	GATC	3 cut(s)	109, 293, 1052
LmnI	GCTCC	4 cut(s)	223, 626, 648, 981
Lsp1109I	GCAGC	2 cut(s)	176, 238
LweI	GCATC	3 cut(s)	58, 76, 427
MaeI	CTAG	3 cut(s)	509, 524, 995
MaeII	ACGT	2 cut(s)	363, 799
MaeIII	GTNAC	5 cut(s)	118, 130, 277, 359, 655
MalI	GATC	3 cut(s)	111, 295, 1054
MboI	GATC	3 cut(s)	109, 293, 1052
MboII	GAAGA	2 cut(s)	119, 459
MhlI	GDGCHC	4 cut(s)	157, 418, 645, 789
MluCI	AATT	6 cut(s)	80, 465, 471, 721, 815, 839
MmeI	TCCRAC	1 cut(s)	1030
Mph1103I	ATGCAT	1 cut(s)	91
MseI	TTAA	4 cut(s)	197, 323, 726, 1063
MspA1I	CMGCKG	2 cut(s)	167, 608
MwoI	GCNNNNNNNGC	4 cut(s)	161, 170, 626, 996
NcoI	CCATGG	1 cut(s)	647
NdeI	CATATG	3 cut(s)	283, 632, 682
NdeII	GATC	3 cut(s)	109, 293, 1052
NlaIII	CATG	7 cut(s)	138, 183, 335, 651, 852, 976, 1003
NlaIV	GGNNCC	2 cut(s)	628, 644
NmuCI	GTSAC	3 cut(s)	118, 130, 277
NsiI	ATGCAT	1 cut(s)	91
NspI	RCATGY	3 cut(s)	138, 852, 1003
PaeI	GCATGC	1 cut(s)	852
PceI	AGGCCT	1 cut(s)	392
PciI	ACATGT	1 cut(s)	134
PfeI	GAWTC	8 cut(s)	17, 94, 400, 421, 517, 544, 587, 677
PkrI	GCNGC	2 cut(s)	166, 228
PscI	ACATGT	1 cut(s)	134
Psp1406I	AACGTT	1 cut(s)	799
PspN4I	GGNNCC	2 cut(s)	628, 644
PspPI	GGNCC	1 cut(s)	925
PstI	CTGCAG	1 cut(s)	664
PstNI	CAGNNNCTG	1 cut(s)	167
PvuII	CAGCTG	2 cut(s)	167, 608
RsaI	GTAC	4 cut(s)	533, 692, 963, 1022
RsaNI	GTAC	4 cut(s)	532, 691, 962, 1021
SalI	GTCGAC	1 cut(s)	884
SaqAI	TTAA	4 cut(s)	197, 323, 726, 1063
SatI	GCNGC	2 cut(s)	165, 227
Sau3AI	GATC	3 cut(s)	109, 293, 1052
Sau96I	GGNCC	1 cut(s)	925
ScaI	AGTACT	1 cut(s)	533
SduI	GDGCHC	4 cut(s)	157, 418, 645, 789
SfaNI	GCATC	3 cut(s)	58, 76, 427
SfcI	CTRYAG	1 cut(s)	660
SphI	GCATGC	1 cut(s)	852
Sse9I	AATT	6 cut(s)	80, 465, 471, 721, 815, 839
SseBI	AGGCCT	1 cut(s)	392
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	3 cut(s)	509, 524, 995
StuI	AGGCCT	1 cut(s)	392
StyI	CCWWGG	1 cut(s)	647
TaiI	ACGT	2 cut(s)	366, 802
TaqI	TCGA	2 cut(s)	762, 885
TasI	AATT	6 cut(s)	80, 465, 471, 721, 815, 839
TatI	WGTACW	2 cut(s)	531, 961
TfiI	GAWTC	8 cut(s)	17, 94, 400, 421, 517, 544, 587, 677
Tru1I	TTAA	4 cut(s)	197, 323, 726, 1063
Tru9I	TTAA	4 cut(s)	197, 323, 726, 1063
TscAI	CASTG	3 cut(s)	669, 794, 988
TseFI	GTSAC	3 cut(s)	118, 130, 277
TseI	GCWGC	2 cut(s)	164, 226
Tsp45I	GTSAC	3 cut(s)	118, 130, 277
TspDTI	ATGAA	4 cut(s)	168, 495, 669, 920
TspGWI	ACGGA	2 cut(s)	42, 106
TspRI	CASTG	3 cut(s)	669, 794, 988
VneI	GTGCAC	1 cut(s)	785
XapI	RAATTY	1 cut(s)	815
XceI	RCATGY	3 cut(s)	138, 852, 1003
XmiI	GTMKAC	1 cut(s)	885
XspI	CTAG	3 cut(s)	509, 524, 995
ZrmI	AGTACT	1 cut(s)	533
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.