Rmu_sc0001145.1_g000005

XS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001145.1
OG0008379
Physical Location & Seq
Reverse (-)
20105 .. 30702
10598 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1383 bp
atgaccgaacaaaggggaaacacacgtccagtggccggacaagagggagatcaaagtgaagatacacaagataaaaggagatggacggatgaggaagatgttcaattgtgcaagtcttggaaagttgtaagtcaatgtccggctgtgggcacaaatcagaaaaaactcgaattatggttgcgcgtgaagcgacactttgacgcaaattggcccaagagccgatcagcccaatctttgcagggaaggtggaaaattttgaagattgaactctttgagtggcattgtgcattaaggcaaacgaaatattggtacaagagcggaatcaccgtggtcttcgacactactggggccttcgtgtgcgtggacagcacaccaagaccactggccgcagggggaagactgttggtgtgtccaagaaacgttgaagaatatgttctggctgtctgggaggatttcataagtggcgatgatccgagggcttccaagtatatgaggactggtgggggttatgagaatgtggggtttaggcaaggcggtggcggcggaggtggtgataatgtgggtcataagcatcttcaggttgaccaggctgcgttgaagaaggcatttctgtactttgcgaaggtgattaatgagaatggagcgcagaagaagatttacatagaggatgggaagcagggacggcttaattgtcttgcttgtggcaccactggcaggtctgcaaaagattttccggatatgcatagtctcatcatgcacagttacaacacggacaatgcggacattcgtgtggatcacttgggcttacacaaggctttgtgtgttttaaaggggtggaactactcaaagcctcctgataactcaaaggcatatcagttcctttccgctgatgaagcagcagcaaatcaagatgacttgattatgtggccgcccatggtgataattcataatacgcttacaggaaagagtaaagatggccgcatggagggtttgggcaataaagctatggatagttatatacgagatcttgggtttgggagtggcaagtcgaagtccctgtacggtagagatggacatttgggaacaactttaatcaaattttcagctgatgaagcgggcctcaaggaggccttgcgaatgacagaattctttgagaaggacaatcatggacgcagggcttggtatcatgtacaaccgctcatgttgggcaataaggatgatgagaacaatccttatcttgtgaagttagatgaaaagactcgggaaaagaagagagtcctttatggttatctaggaactgcttctgatctcgagaaagttgattttgacacgagaaagaaggctgtgattgaaagctggagagaattcaaacctcctaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XS

Protein Analysis

460

Amino Acids

52.0

Weight (kDa)

8.91

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XS PF03468 304 - 438 3.4e-27 XS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 705
AccB1I GGYRCC 1 cut(s) 704
AccBSI CCGCTC 2 cut(s) 318, 1198
AccII CGCG 1 cut(s) 183
AccIII TCCGGA 1 cut(s) 733
AclI AACGTT 1 cut(s) 420
AclWI GGATC 2 cut(s) 464, 801
AcoI YGGCCR 4 cut(s) 33, 384, 926, 976
AcsI RAATTY 4 cut(s) 252, 1097, 1145, 1364
AcuI CTGAAG 1 cut(s) 560
AfaI GTAC 4 cut(s) 311, 614, 1061, 1191
AfiI CCNNNNNNNGG 6 cut(s) 12, 35, 146, 714, 985, 1126
AflIII ACRYGT 1 cut(s) 23
AgsI TTSAA 7 cut(s) 104, 259, 266, 425, 598, 1352, 1369
AjiI CACGTC 1 cut(s) 26
AjnI CCWGG 1 cut(s) 585
AluBI AGCT 3 cut(s) 1004, 1106, 1356
AluI AGCT 3 cut(s) 1004, 1106, 1356
Alw26I GTCTC 1 cut(s) 752
AlwI GGATC 2 cut(s) 464, 801
Ama87I CYCGRG 2 cut(s) 1260, 1310
Aor13HI TCCGGA 1 cut(s) 733
AoxI GGCC 8 cut(s) 33, 209, 348, 384, 926, 976, 1117, 1128
ApeKI GCWGC 3 cut(s) 590, 896, 899
ApoI RAATTY 4 cut(s) 252, 1097, 1145, 1364
AseI ATTAAT 1 cut(s) 630
Asp700I GAANNNNTTC 3 cut(s) 99, 432, 1300
AspLEI GCGC 2 cut(s) 183, 646
AspS9I GGNCC 3 cut(s) 210, 348, 1117
AsuHPI GGTGA 4 cut(s) 316, 563, 637, 949
AvaI CYCGRG 2 cut(s) 1260, 1310
BaeGI GKGCMC 1 cut(s) 152
BanI GGYRCC 1 cut(s) 704
BarI GAAGNNNNNNTAC 4 cut(s) 641, 673, 1043, 1075
BauI CACGAG 1 cut(s) 1330
BbsI GAAGAC 2 cut(s) 325, 403
BbvI GCAGC 3 cut(s) 577, 908, 911
BccI CCATC 4 cut(s) 75, 662, 968, 1064
BceAI ACGGC 1 cut(s) 698
BciT130I CCWGG 1 cut(s) 587
BcoDI GTCTC 1 cut(s) 752
BfaI CTAG 1 cut(s) 1292
BfuAI ACCTGC 1 cut(s) 705
BglII AGATCT 1 cut(s) 1024
BisI GCNGC 7 cut(s) 387, 541, 591, 897, 900, 929, 979
BlsI GCNGC 7 cut(s) 388, 542, 592, 898, 901, 930, 980
Bme1390I CCNGG 1 cut(s) 587
BmeT110I CYCGRG 2 cut(s) 1260, 1310
BmgBI CACGTC 1 cut(s) 26
BmgT120I GGNCC 3 cut(s) 210, 348, 1117
BmiI GGNNCC 2 cut(s) 349, 706
BmrFI CCNGG 1 cut(s) 587
BmrI ACTGGG 1 cut(s) 354
BmsI GCATC 1 cut(s) 580
BmuI ACTGGG 1 cut(s) 354
BpiI GAAGAC 2 cut(s) 325, 403
BpmI CTGGAG 1 cut(s) 1378
BpuEI CTTGAG 1 cut(s) 1106
BsaJI CCNNGG 3 cut(s) 327, 473, 933
BsaWI WCCGGW 1 cut(s) 733
Bsc4I CCNNNNNNNGG 6 cut(s) 12, 35, 146, 714, 985, 1126
Bse1I ACTGG 5 cut(s) 29, 349, 387, 502, 715
BseAI TCCGGA 1 cut(s) 733
BseBI CCWGG 1 cut(s) 587
BseDI CCNNGG 3 cut(s) 327, 473, 933
BseGI GGATG 3 cut(s) 94, 673, 1222
BseLI CCNNNNNNNGG 6 cut(s) 12, 35, 146, 714, 985, 1126
BseNI ACTGG 5 cut(s) 29, 349, 387, 502, 715
BseSI GKGCMC 1 cut(s) 152
BseXI GCAGC 3 cut(s) 577, 908, 911
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 8 cut(s) 35, 211, 350, 386, 928, 978, 1119, 1130
BshNI GGYRCC 1 cut(s) 704
BsiHKCI CYCGRG 2 cut(s) 1260, 1310
BsiSI CCGG 3 cut(s) 36, 140, 734
BslFI GGGAC 2 cut(s) 693, 1039
BslI CCNNNNNNNGG 6 cut(s) 12, 35, 146, 714, 985, 1126
BsmAI GTCTC 1 cut(s) 752
BsmFI GGGAC 2 cut(s) 693, 1039
BsnI GGCC 8 cut(s) 35, 211, 350, 386, 928, 978, 1119, 1130
BsoBI CYCGRG 2 cut(s) 1260, 1310
Bsp1286I GDGCHC 1 cut(s) 152
Bsp13I TCCGGA 1 cut(s) 733
Bsp1407I TGTACA 1 cut(s) 1189
Bsp143I GATC 6 cut(s) 49, 221, 469, 793, 1024, 1306
Bsp19I CCATGG 1 cut(s) 933
BspANI GGCC 8 cut(s) 35, 211, 350, 386, 928, 978, 1119, 1130
BspEI TCCGGA 1 cut(s) 733
BspFNI CGCG 1 cut(s) 183
BspLI GGNNCC 2 cut(s) 349, 706
BspMI ACCTGC 1 cut(s) 705
BspPI GGATC 2 cut(s) 464, 801
BspT107I GGYRCC 1 cut(s) 704
BsrBI CCGCTC 2 cut(s) 318, 1198
BsrGI TGTACA 1 cut(s) 1189
BsrI ACTGG 5 cut(s) 29, 349, 387, 502, 715
BssECI CCNNGG 3 cut(s) 327, 473, 933
BssMI GATC 6 cut(s) 49, 221, 469, 793, 1024, 1306
BssSI CACGAG 1 cut(s) 1330
BssT1I CCWWGG 1 cut(s) 933
Bst2BI CACGAG 1 cut(s) 1330
Bst2UI CCWGG 1 cut(s) 587
Bst4CI ACNGT 4 cut(s) 328, 402, 761, 1064
Bst6I CTCTTC 1 cut(s) 1265
BstAUI TGTACA 1 cut(s) 1189
BstC8I GCNNGC 1 cut(s) 1117
BstDEI CTNAG 1 cut(s) 1377
BstDSI CCRYGG 2 cut(s) 327, 933
BstENI CCTNNNNNAGG 1 cut(s) 1124
BstF5I GGATG 3 cut(s) 94, 673, 1222
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 2 cut(s) 183, 646
BstKTI GATC 6 cut(s) 52, 224, 472, 796, 1027, 1309
BstMAI GTCTC 1 cut(s) 752
BstMBI GATC 6 cut(s) 49, 221, 469, 793, 1024, 1306
BstMWI GCNNNNNNNGC 7 cut(s) 187, 366, 540, 682, 711, 893, 1112
BstNI CCWGG 1 cut(s) 587
BstSCI CCNGG 1 cut(s) 585
BstSLI GKGCMC 1 cut(s) 152
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 3 cut(s) 577, 908, 911
BstV2I GAAGAC 2 cut(s) 325, 403
BstX2I RGATCY 1 cut(s) 1024
BstYI RGATCY 1 cut(s) 1024
BsuRI GGCC 8 cut(s) 35, 211, 350, 386, 928, 978, 1119, 1130
BtgI CCRYGG 2 cut(s) 327, 933
BtgZI GCGATG 1 cut(s) 480
BtrI CACGTC 1 cut(s) 26
BtsCI GGATG 3 cut(s) 94, 673, 1222
BtsIMutI CAGTG 3 cut(s) 36, 380, 708
BveI ACCTGC 1 cut(s) 705
Cac8I GCNNGC 1 cut(s) 1117
CfoI GCGC 2 cut(s) 183, 646
Cfr13I GGNCC 3 cut(s) 210, 348, 1117
CseI GACGC 2 cut(s) 209, 1179
Csp6I GTAC 4 cut(s) 310, 613, 1060, 1190
CviAII CATG 6 cut(s) 754, 934, 982, 1166, 1187, 1201
CviQI GTAC 4 cut(s) 310, 613, 1060, 1190
DdeI CTNAG 1 cut(s) 1377
DpnI GATC 6 cut(s) 51, 223, 471, 795, 1026, 1308
DpnII GATC 6 cut(s) 49, 221, 469, 793, 1024, 1306
DraI TTTAAA 1 cut(s) 828
EaeI YGGCCR 4 cut(s) 33, 384, 926, 976
Eam1104I CTCTTC 1 cut(s) 1265
EarI CTCTTC 1 cut(s) 1265
EciI GGCGGA 1 cut(s) 558
Eco130I CCWWGG 1 cut(s) 933
Eco147I AGGCCT 1 cut(s) 1130
Eco57I CTGAAG 1 cut(s) 560
Eco88I CYCGRG 2 cut(s) 1260, 1310
EcoNI CCTNNNNNAGG 1 cut(s) 1124
EcoO109I RGGNCCY 1 cut(s) 348
EcoRI GAATTC 2 cut(s) 1145, 1364
EcoRII CCWGG 1 cut(s) 585
EcoT14I CCWWGG 1 cut(s) 933
EcoT22I ATGCAT 1 cut(s) 744
ErhI CCWWGG 1 cut(s) 933
FaeI CATG 6 cut(s) 757, 937, 985, 1169, 1190, 1204
FalI AAGNNNNNCTT 4 cut(s) 179, 211, 1115, 1147
FaqI GGGAC 2 cut(s) 693, 1039
FatI CATG 6 cut(s) 753, 933, 981, 1165, 1186, 1200
FauI CCCGC 1 cut(s) 1108
Fnu4HI GCNGC 7 cut(s) 387, 541, 591, 897, 900, 929, 979
FokI GGATG 3 cut(s) 101, 680, 1229
Fsp4HI GCNGC 7 cut(s) 387, 541, 591, 897, 900, 929, 979
FspBI CTAG 1 cut(s) 1292
GlaI GCGC 2 cut(s) 182, 645
GluI GCNGC 7 cut(s) 387, 541, 591, 897, 900, 929, 979
GsuI CTGGAG 1 cut(s) 1378
HaeIII GGCC 8 cut(s) 35, 211, 350, 386, 928, 978, 1119, 1130
HapII CCGG 3 cut(s) 36, 140, 734
HgaI GACGC 2 cut(s) 209, 1179
HhaI GCGC 2 cut(s) 183, 646
Hin1II CATG 6 cut(s) 757, 937, 985, 1169, 1190, 1204
Hin6I GCGC 2 cut(s) 181, 644
HinP1I GCGC 2 cut(s) 181, 644
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HinfI GANTC 3 cut(s) 321, 1258, 1275
HpaII CCGG 3 cut(s) 36, 140, 734
HphI GGTGA 4 cut(s) 316, 563, 637, 949
Hpy166II GTNNAC 2 cut(s) 364, 583
Hpy188I TCNGA 3 cut(s) 159, 474, 1306
Hpy188III TCNNGA 6 cut(s) 734, 854, 908, 1262, 1310, 1312
Hpy8I GTNNAC 2 cut(s) 364, 583
HpyAV CCTTC 6 cut(s) 237, 361, 595, 616, 1150, 1333
HpyCH4III ACNGT 4 cut(s) 328, 402, 761, 1064
HpyCH4IV ACGT 2 cut(s) 25, 420
HpyCH4V TGCA 6 cut(s) 111, 238, 287, 722, 742, 757
HpyF10VI GCNNNNNNNGC 7 cut(s) 187, 366, 540, 682, 711, 893, 1112
HpyF3I CTNAG 1 cut(s) 1377
HpySE526I ACGT 2 cut(s) 25, 420
Hsp92II CATG 6 cut(s) 757, 937, 985, 1169, 1190, 1204
HspAI GCGC 2 cut(s) 181, 644
Kpn2I TCCGGA 1 cut(s) 733
Kzo9I GATC 6 cut(s) 49, 221, 469, 793, 1024, 1306
LmnI GCTCC 1 cut(s) 641
Lsp1109I GCAGC 3 cut(s) 577, 908, 911
LweI GCATC 1 cut(s) 580
MaeI CTAG 1 cut(s) 1292
MaeII ACGT 2 cut(s) 25, 420
MaeIII GTNAC 1 cut(s) 761
MalI GATC 6 cut(s) 51, 223, 471, 795, 1026, 1308
MbiI CCGCTC 2 cut(s) 318, 1198
MboI GATC 6 cut(s) 49, 221, 469, 793, 1024, 1306
MfeI CAATTG 1 cut(s) 104
MflI RGATCY 1 cut(s) 1024
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 9 cut(s) 104, 170, 205, 252, 688, 942, 1097, 1145, 1364
MlyI GAGTC 2 cut(s) 1252, 1284
Mph1103I ATGCAT 1 cut(s) 744
MroI TCCGGA 1 cut(s) 733
MroXI GAANNNNTTC 3 cut(s) 99, 432, 1300
MseI TTAA 5 cut(s) 290, 630, 687, 827, 1091
MslI CAYNNNNRTG 1 cut(s) 788
MspA1I CMGCKG 2 cut(s) 887, 1106
MspI CCGG 3 cut(s) 36, 140, 734
MspR9I CCNGG 1 cut(s) 587
MunI CAATTG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 587
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 7 cut(s) 187, 366, 540, 682, 711, 893, 1112
NcoI CCATGG 1 cut(s) 933
NdeII GATC 6 cut(s) 49, 221, 469, 793, 1024, 1306
NlaIII CATG 6 cut(s) 757, 937, 985, 1169, 1190, 1204
NlaIV GGNNCC 2 cut(s) 349, 706
NsiI ATGCAT 1 cut(s) 744
PaeR7I CTCGAG 1 cut(s) 1310
PceI AGGCCT 1 cut(s) 1130
PdmI GAANNNNTTC 3 cut(s) 99, 432, 1300
PfeI GAWTC 1 cut(s) 321
PkrI GCNGC 7 cut(s) 388, 542, 592, 898, 901, 930, 980
PleI GAGTC 2 cut(s) 1252, 1283
PpsI GAGTC 2 cut(s) 1252, 1283
PshBI ATTAAT 1 cut(s) 630
Psp1406I AACGTT 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 585
PspGI CCWGG 1 cut(s) 585
PspN4I GGNNCC 2 cut(s) 349, 706
PspPI GGNCC 3 cut(s) 210, 348, 1117
PsuI RGATCY 1 cut(s) 1024
PvuII CAGCTG 1 cut(s) 1106
RsaI GTAC 4 cut(s) 311, 614, 1061, 1191
RsaNI GTAC 4 cut(s) 310, 613, 1060, 1190
RseI CAYNNNNRTG 1 cut(s) 788
SaqAI TTAA 5 cut(s) 290, 630, 687, 827, 1091
SatI GCNGC 7 cut(s) 387, 541, 591, 897, 900, 929, 979
Sau3AI GATC 6 cut(s) 49, 221, 469, 793, 1024, 1306
Sau96I GGNCC 3 cut(s) 210, 348, 1117
SchI GAGTC 2 cut(s) 1252, 1284
ScrFI CCNGG 1 cut(s) 587
SduI GDGCHC 1 cut(s) 152
SfaNI GCATC 1 cut(s) 580
Sfr274I CTCGAG 1 cut(s) 1310
SlaI CTCGAG 1 cut(s) 1310
SmiMI CAYNNNNRTG 1 cut(s) 788
SmlI CTYRAG 2 cut(s) 1121, 1310
SmoI CTYRAG 2 cut(s) 1121, 1310
Sse9I AATT 9 cut(s) 104, 170, 205, 252, 688, 942, 1097, 1145, 1364
SseBI AGGCCT 1 cut(s) 1130
SspI AATATT 1 cut(s) 305
SspMI CTAG 1 cut(s) 1292
StuI AGGCCT 1 cut(s) 1130
StyD4I CCNGG 1 cut(s) 585
StyI CCWWGG 1 cut(s) 933
TaaI ACNGT 4 cut(s) 328, 402, 761, 1064
TaiI ACGT 2 cut(s) 28, 423
TaqI TCGA 4 cut(s) 168, 336, 1049, 1311
TaqII GACCGA 1 cut(s) 20
TasI AATT 9 cut(s) 104, 170, 205, 252, 688, 942, 1097, 1145, 1364
TatI WGTACW 2 cut(s) 612, 1189
TauI GCSGC 4 cut(s) 389, 543, 931, 981
TfiI GAWTC 1 cut(s) 321
Tru1I TTAA 5 cut(s) 290, 630, 687, 827, 1091
Tru9I TTAA 5 cut(s) 290, 630, 687, 827, 1091
TscAI CASTG 3 cut(s) 36, 387, 715
TseI GCWGC 3 cut(s) 590, 896, 899
TspDTI ATGAA 5 cut(s) 445, 906, 935, 1125, 1266
TspGWI ACGGA 2 cut(s) 101, 785
TspRI CASTG 3 cut(s) 36, 387, 715
VspI ATTAAT 1 cut(s) 630
XagI CCTNNNNNAGG 1 cut(s) 1124
XapI RAATTY 4 cut(s) 252, 1097, 1145, 1364
XhoI CTCGAG 1 cut(s) 1310
XmnI GAANNNNTTC 3 cut(s) 99, 432, 1300
XspI CTAG 1 cut(s) 1292
Zsp2I ATGCAT 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.