Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001306.1

Orthogroup ID

OG0006434

Physical Location & Seq

Genomic Coordinates Forward (+)

64066 .. 64698

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgcttcaggccaaaaattggcagaaagcactagagctctatgaggatcttaagtcagctaaaattgagctgactgtttcaactgtcaatgctttgattactgccctatgtgatggggatcaactacagaaggctatggaagttctgtcggaaatgaagagtataggactgcgtccaaacagtataacatactccatacttgtagtggcaagtgaaaagaaggatgatctagaagctggcctgctgctcctttctcaagctgaaaaggataaagttgttccaaaccttgtcatgtgctgtagatgcattataggtgagtttacattggtaactaatttttcatgtccttctcactttggcatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

121

Amino Acids

13.34

Weight (kDa)

5.11

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	2 - 38	4.7e-06	PPR repeat family
PPR_long	PF17177	4 - 96	5.9e-06	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	10 - 95	6.3e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	13 - 68	2.4e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	26 - 68	2e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006434)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010047 RLG00000020064 RLG00000028774
rosa_multiflora	Rmu_sc0001306.1_g000022 Rmu_sc0001438.1_g000035
rosa_roxburghii	Rroxscaffold_2G00101450 Rroxscaffold_7G00192090
rosa_rugosa	Rorug05G0119200 Rorug05G0119300 Rorug05G0119400 Rorug05G0119500 Rorug05G0119600 Rorug05G0119600 Rorug05G0119700 Rorug05G0119800 Rorug05G0119900 Rorug05G0120000
rosa_samantha	Rh2AG339800 Rh2AG437400 Rh2CG423700 Rh2DG357000 Rh2DG455400 Rh3CG365400 Rh6BG318500 Rh6CG026900 Rh7AG270000 Rh7CG289200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	18
AclWI	GGATC	2 cut(s)	54, 126
AfiI	CCNNNNNNNGG	1 cut(s)	18
AflII	CTTAAG	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	81
AluBI	AGCT	5 cut(s)	37, 59, 70, 236, 260
AluI	AGCT	5 cut(s)	37, 59, 70, 236, 260
Alw21I	GWGCWC	1 cut(s)	39
AlwI	GGATC	2 cut(s)	54, 126
AoxI	GGCC	2 cut(s)	9, 238
ApeKI	GCWGC	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	32, 230
BfmI	CTRYAG	2 cut(s)	125, 298
BfrI	CTTAAG	1 cut(s)	50
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
BmsI	GCATC	1 cut(s)	293
BpuEI	CTTGAG	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	117
BseGI	GGATG	1 cut(s)	229
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	231
BshFI	GGCC	2 cut(s)	11, 240
BsiHKAI	GWGCWC	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	18
BsnI	GGCC	2 cut(s)	11, 240
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	46, 118, 226
BspANI	GGCC	2 cut(s)	11, 240
BspPI	GGATC	2 cut(s)	54, 126
BspTI	CTTAAG	1 cut(s)	50
BssMI	GATC	3 cut(s)	46, 118, 226
Bst4CI	ACNGT	3 cut(s)	76, 85, 182
Bst6I	CTCTTC	1 cut(s)	152
BstAFI	CTTAAG	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	238, 242
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	3 cut(s)	49, 121, 229
BstMBI	GATC	3 cut(s)	46, 118, 226
BstMWI	GCNNNNNNNGC	1 cut(s)	303
BstSFI	CTRYAG	2 cut(s)	125, 298
BstV1I	GCAGC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	11, 240
BtsCI	GGATG	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	238, 242
CseI	GACGC	1 cut(s)	161
CviAII	CATG	2 cut(s)	292, 342
CviJI	RGCY	8 cut(s)	11, 37, 59, 70, 134, 236, 240, 260
CviKI_1	RGCY	8 cut(s)	11, 37, 59, 70, 134, 236, 240, 260
DpnI	GATC	3 cut(s)	48, 120, 228
DpnII	GATC	3 cut(s)	46, 118, 226
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Ecl136II	GAGCTC	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	39
FaeI	CATG	2 cut(s)	295, 345
FatI	CATG	2 cut(s)	291, 341
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	245
FspBI	CTAG	2 cut(s)	32, 230
GluI	GCNGC	1 cut(s)	245
HaeIII	GGCC	2 cut(s)	11, 240
HgaI	GACGC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	295, 345
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	2 cut(s)	151, 365
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	1 cut(s)	321
HpyAV	CCTTC	3 cut(s)	124, 214, 357
HpyCH4III	ACNGT	3 cut(s)	76, 85, 182
HpyCH4V	TGCA	1 cut(s)	306
HpyF10VI	GCNNNNNNNGC	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	295, 345
Kzo9I	GATC	3 cut(s)	46, 118, 226
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	2 cut(s)	222, 254
Lsp1109I	GCAGC	1 cut(s)	231
LweI	GCATC	1 cut(s)	293
MaeI	CTAG	2 cut(s)	32, 230
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	3 cut(s)	48, 120, 228
MboI	GATC	3 cut(s)	46, 118, 226
MboII	GAAGA	1 cut(s)	169
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	3 cut(s)	16, 63, 334
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	1 cut(s)	37
Mph1103I	ATGCAT	1 cut(s)	308
MseI	TTAA	1 cut(s)	51
MspCI	CTTAAG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	303
NdeII	GATC	3 cut(s)	46, 118, 226
NlaIII	CATG	2 cut(s)	295, 345
NsiI	ATGCAT	1 cut(s)	308
PflFI	GACNNNGTC	1 cut(s)	171
PflMI	CCANNNNNTGG	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	46
PsyI	GACNNNGTC	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	1 cut(s)	245
Sau3AI	GATC	3 cut(s)	46, 118, 226
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	7 cut(s)	39, 61, 72, 238, 262, 288, 316
SfaNI	GCATC	1 cut(s)	293
SfcI	CTRYAG	2 cut(s)	125, 298
SmlI	CTYRAG	2 cut(s)	50, 255
SmoI	CTYRAG	2 cut(s)	50, 255
Sse9I	AATT	3 cut(s)	16, 63, 334
SspMI	CTAG	2 cut(s)	32, 230
SstI	GAGCTC	1 cut(s)	39
TaaI	ACNGT	3 cut(s)	76, 85, 182
TasI	AATT	3 cut(s)	16, 63, 334
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TseI	GCWGC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	170, 330
Tth111I	GACNNNGTC	1 cut(s)	171
Van91I	CCANNNNNTGG	1 cut(s)	18
Vha464I	CTTAAG	1 cut(s)	50
XbaI	TCTAGA	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XspI	CTAG	2 cut(s)	32, 230
Zsp2I	ATGCAT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.