Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001311.1

Orthogroup ID

OG0005762

Physical Location & Seq

Genomic Coordinates Forward (+)

134500 .. 139776

Gene Structure 5277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4314 bp

atggaagatgaagacgaacccgacgggttgaactggcggaggagttgtgatctgccacagtccaaggttgaggagatggctggtattcgggagatcactgctggtgaattcataaaaggtggccataaactgggcctgttttctcagagaggtcctttgaaaggaagaagccctatgctttggggcacgctgcacagttcagtgcggggttctgctaataggagaaatgcttcattgagatgtcgtgctcaagaaaagcccacagctgttgtttcggctgtgagcagttcggtggaggcgctaccaagtgtgattgagaagccttcttcgtcagttatccatttttatcgtgtccctctcattcaggagagtgcaacatctgagcttctcaaaaccgtgcagtcaaagatttcgagccagatagttggtttgaaaactgagcagtgtttcaacattgggctcagttcgcagctctctagtgaaaagcttttggtgcttaagtggcttcttcaggagacttatgagccagagaatttgggggtcaacagctttcttgaaaagaaaagacatgaaggactgaacacagttattgttgaggttggtcctcggttgtcgtttacaacagcatggtcttccaatgctatttcgatatgtagagcttgtggcttgacagaggtgactcgtttggaacggtcaaggaggtacttgctgtttagtaaggggaacttgcaggaccaacagattaatgagtttgctgcaatggttcatgatcggatgacggagtgtgtttacacccagcagctcacttcttttgaaacaagtgtggttcccgacaaagtacgtcatattcctgttatggagagaggtcggaaggcattagaggagattaatcaggaaatgggtttggcatttgatgagcaagatctccaatactacaccaggctattcaaggaagaaatcaaacggaatccaacaacagttgaactttttgatattgcacagtccaacagtgagcatagcaggcactggttttttactggtaaaatttttatagatggacagcctatggacaaaactctaatgcaaattgtgaagagcactttgcaagcaaacccaaacaattctgtcattgggtttaaggacaactcaagtgcaattaggggatttcttgtgaagcaattgcgaccagttcagccaggttcaacatctccgttgcatatgtccacacgtgacctggatatattatttactgcagagacccataattttccatgtgctgtagcaccttaccctggtgcagagacaggtgcaggaggtagaatcagggacactcatgcaactggaaggggttcttttgtggtagcatctactgctggttattgtgtcgggaatctcaatatggaagggtcttatgctccttgggaagattcatctttcttgtatccatcaaatttggcctcacctttgcagatcctcatagatgctagtaatggtgcatcagactacggcaacaaatttggtgagccattgattcagggatacactagaacctttggaatgaggctcccaagtggtgagaggcgggaatggttgaagccaatcatgtttagtgcaggaattggacaaattgatcacacccatataacaaaaggagagcctgatattggcatgctggttgtaaagattggaggccctgcctatcgtattggtatgggcggtggggctgcatcgagcatggttagtggtcaaaatgacgtggagctggatttcaatgctgtacagcgtggggatgcagagatggcccaaaaattgtatcgtgttgttcgtgcctgcattgagatgggggacagtaacccaatcattagcattcatgaccaaggagctggtggaaactgcaacgtggttaaggaaattatttacccgaagggtggtgagattgatatccgggcaattgtggttggtgattacacaatgtctgtcttggagatatggggtgcagaatatcaggaacaagatgccatcttggttaggcctgaaagtcacgaacttttgcaatcaatatgtgaaagagaaaggtgttccatggctgttattggaacaatcaatggtgagggacgtattgttttaattgatagcttagctattgaaaaatctaaatcaagtggcctccctctccctgatcctgctgtcgatttggagcttgagaaagtacttggtgatatgccacagaaaagctttgagttcgagcggatggcagatgcacgagagccacttgatattgcccctggaatcactgtaatggatgctcttaagagagttttaagacttccatccatctgttcaaagcggttcttgacctcgaaagtagacaggtgtgttacaggtctggtagctcagcagcaaactgtcggccccctacaaattcctctctctgatgttggagtaattgctcagacttttactggcttgactggaggtgcatgtgctattggggagcagccaatcaaaggtttgttggatccaaaagcaatggcgagattggcagttggggaagcactcacaaaccttgtttgggcaaaggtcacttctctatctgatgttaaagcaagtgggaattggatgtttgcggccaagcttgatggtgaaggagcagctatgtatgatgctgctaatgctctttcagacgcaatgatcaaacttggtattgctattgatgggggaaaggacagtctttccatggcagcccatgctgcaggagaggttgttaaggctcctggaaatcttgtaatcagtgtttattgtacttgtccagacataacaaaaacagtgaccccagatttgaagcttggagatgatggtgttctgcttcacattgatttggctgcaggaaagcggcgattaggtggctctgctcttgctcaggtttttgaccagattgggaacgattgtcctgaccttgaggatgttccatatctgaagcgagtgtttgagggagttcagggccttcttgacgatgaactgatctctgctggccatgatatcagtgatggtgggcttctggtctctgcccttgagatggcatttgctggaaattgtggcattaatttggacttgacttcgcaccataagagcctcttccaaacaattttttctgaagagcttggtctgattattgaggtgagcaagaaaaacttagatatggtaatgggaaagctaagcagtggaggtgtttctgcagagatgattggacaggtaactgccacaccttcaatagagttaaaggtggatggggtaactcatttgaacgaaagtacttcttttgtaagggacatgtgggaggatactagttttcagctggaaaaatttcagagattggcttcttgtgttgatctagagaaagaagggttgaaagataggcatgagccttcatggcagttgtcttttactccgtccttcacagatgaaaagtatatgaccacaacctccaaaccaaaggtggctgttattcgagaagaaggaagcaatggggatagagaaatggctgcggcattttatgctgctggctttgagccatgggatattacaatgtcagaccttcttaatggagctgtatcactgcaagagttccgtggaattgtgtttgttggaggctttagctatgctgatgtccttgattctgcaaaaggttggtctgcttcaattagatttaatcagccccttctgaatcaatttcaggagttttacaagaggcacgacactttcagtcttggcgtttgcaatgggtgtcagcttatggctcttttggggtgggtcccaggtcctcaagttgggggcgtgcatggtggtggtggggatccatcacagccgaggttcattcacaatgagtcaggccggtttgagtgtcgctttactagtgtaaaaattaaggactcaccatctataatgttaaaaggaatggaaggaagtaccttgggcgtgtgggctgcccatggtgagggaagagcctattttcctgatgatggtgtttttgatcgtgtgctccactccaagttggctccagtaagatattgtgatgatgatgggattgaaacggaactttatcccttcaacctgaatggctctcccttgggagttgcagcaatttgttcaccagatgggaggcatcttgccatgatgcctcatccagagcgctgcttcttaatgtggcagtatccatggtatcccaagcagtgggatgttgaaaagaaaggccctagtccatggctacggatgttccagaatgccagagagtggtgctccagaaatgatgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004642 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0016874 GO:0016879 GO:0016884 GO:0017076 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0055046 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS_C GATase_5

Protein Analysis

1437

Amino Acids

157.33

Weight (kDa)

5.38

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FGAR-AT_N	PF18076	149 - 267	3.9e-21	Formylglycinamide ribonucleotide amidotransferase N-terminal
FGAR-AT_linker	PF18072	293 - 342	4.9e-11	Formylglycinamide ribonucleotide amidotransferase linker domain
AIRS_C	PF02769	556 - 710	1.8e-26	AIR synthase related protein, C-terminal domain
FGAR-AT_PurM_N-like	PF22689	781 - 934	2.9e-52	FGAR-AT PurM_N-like domain
AIRS_C	PF02769	965 - 1095	1.7e-17	AIR synthase related protein, C-terminal domain
GATase_5	PF13507	1163 - 1432	2.7e-105	CobB/CobQ-like glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74260
fragaria_vesca	FvH4_5g19530 FvH4_5g19530 FvH4_5g19530
malus_domestica	MD03G1203100.v1.1 MD04G1022300.v1.1
prunus_persica	Prupe.1G542100_v2.0.a1 Prupe.1G542100_v2.0.a1 Prupe.1G542100_v2.0.a1 Prupe.1G542100_v2.0.a1 Prupe.1G542100_v2.0.a1 Prupe.8G024000_v2.0.a1 Prupe.8G024000_v2.0.a1 Prupe.8G024000_v2.0.a1
pyrus_communis	pycom04g01890 pycom04g01930
rosa_chinensis	RchiOBHm_Chr7g0204141
rosa_laevigata	RLG00000003485
rosa_multiflora	Rmu_sc0001311.1_g000031
rosa_roxburghii	Rroxscaffold_3G00253310
rosa_rugosa	Rorug07G0081100 Rorug07G0081200 Rorug07G0081200
rosa_samantha	Rh7AG211000 Rh7BG209600 Rh7CG223500 Rh7DG217800
rosa_wichuraiana	Rw7G018360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	130, 4230, 4290
AccBSI	CCGCTC	1 cut(s)	2248
AccI	GTMKAC	1 cut(s)	2367
AciI	CCGC	9 cut(s)	37, 205, 1582, 1716, 2248, 2347, 2627, 2893, 3545
AclWI	GGATC	6 cut(s)	1465, 2174, 2513, 2526, 3848, 3861
AcoI	YGGCCR	3 cut(s)	121, 2628, 3031
AcsI	RAATTY	7 cut(s)	107, 532, 1044, 1450, 1514, 2421, 3362
AcuI	CTGAAG	3 cut(s)	494, 2996, 3174
AcvI	CACGTG	1 cut(s)	1229
AfaI	GTAC	7 cut(s)	704, 840, 1779, 2211, 2803, 3313, 3967
AfeI	AGCGCT	1 cut(s)	4190
AflII	CTTAAG	2 cut(s)	497, 2309
AflIII	ACRYGT	2 cut(s)	1226, 3330
AhlI	ACTAGT	2 cut(s)	3344, 3911
AjiI	CACGTC	1 cut(s)	1756
AjnI	CCWGG	7 cut(s)	938, 1195, 1233, 1291, 2284, 2773, 3814
Alw21I	GWGCWC	4 cut(s)	250, 1100, 4041, 4298
Alw26I	GTCTC	4 cut(s)	509, 1250, 1295, 3067
AlwI	GGATC	6 cut(s)	1465, 2174, 2513, 2526, 3848, 3861
AlwNI	CAGNNNCTG	1 cut(s)	1026
Aor51HI	AGCGCT	1 cut(s)	4190
ApoI	RAATTY	7 cut(s)	107, 532, 1044, 1450, 1514, 2421, 3362
ArsI	GACNNNNNNTTYG	4 cut(s)	2821, 2853, 3674, 3706
AseI	ATTAAT	3 cut(s)	744, 888, 3102
Asp700I	GAANNNNTTC	3 cut(s)	229, 1348, 3363
AspLEI	GCGC	2 cut(s)	301, 4191
AsuC2I	CCSGG	1 cut(s)	1946
AvaII	GGWCC	5 cut(s)	152, 602, 733, 3811, 3818
BaeGI	GKGCMC	1 cut(s)	188
BalI	TGGCCA	2 cut(s)	123, 3033
BamHI	GGATCC	2 cut(s)	2518, 3853
BanII	GRGCYC	1 cut(s)	462
BauI	CACGAG	1 cut(s)	2262
BbrPI	CACGTG	1 cut(s)	1229
BbsI	GAAGAC	2 cut(s)	18, 624
Bbv12I	GWGCWC	4 cut(s)	250, 1100, 4041, 4298
BceAI	ACGGC	1 cut(s)	1522
BciT130I	CCWGG	7 cut(s)	940, 1197, 1235, 1293, 2286, 2775, 3816
BciVI	GTATCC	5 cut(s)	1452, 1532, 3334, 4221, 4230
BclI	TGATCA	2 cut(s)	1630, 2691
BcnI	CCSGG	1 cut(s)	1946
BcoDI	GTCTC	4 cut(s)	509, 1250, 1295, 3067
BcuI	ACTAGT	2 cut(s)	3344, 3911
BfaI	CTAG	7 cut(s)	477, 1485, 1545, 3345, 3392, 3912, 4254
BfmI	CTRYAG	5 cut(s)	1251, 1278, 2751, 2883, 3234
BfoI	RGCGCY	2 cut(s)	302, 4192
BfrI	CTTAAG	2 cut(s)	497, 2309
BfuI	GTATCC	5 cut(s)	1452, 1532, 3334, 4221, 4230
BglI	GCCNNNNNGGC	1 cut(s)	3430
BglII	AGATCT	1 cut(s)	922
BlpI	GCTNAGC	3 cut(s)	2137, 2394, 3215
BmcAI	AGTACT	2 cut(s)	2211, 3313
Bme1390I	CCNGG	8 cut(s)	940, 1197, 1235, 1293, 1946, 2286, 2775, 3816
Bme18I	GGWCC	5 cut(s)	152, 602, 733, 3811, 3818
BmgBI	CACGTC	1 cut(s)	1756
BmiI	GGNNCC	9 cut(s)	828, 1565, 2413, 2520, 2772, 3812, 3813, 3855, 4056
BmrFI	CCNGG	8 cut(s)	940, 1197, 1235, 1293, 1946, 2286, 2775, 3816
BmrI	ACTGGG	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	140
BpiI	GAAGAC	2 cut(s)	18, 624
BplI	GAGNNNNNCTC	2 cut(s)	4280, 4312
BpmI	CTGGAG	3 cut(s)	2493, 4041, 4282
Bpu10I	CCTNAGC	1 cut(s)	2919
Bpu1102I	GCTNAGC	3 cut(s)	2137, 2394, 3215
BpuEI	CTTGAG	6 cut(s)	234, 1132, 2222, 2978, 3092, 3807
BpuMI	CCSGG	1 cut(s)	1946
BsaAI	YACGTR	1 cut(s)	1229
BsaBI	GATNNNNATC	1 cut(s)	1940
BsaI	GGTCTC	2 cut(s)	1250, 3067
BsaXI	ACNNNNNCTCC	4 cut(s)	31, 61, 2748, 2778
Bse118I	RCCGGY	1 cut(s)	3891
Bse1I	ACTGG	9 cut(s)	38, 135, 1031, 1042, 1187, 1345, 2467, 2476, 4058
Bse3DI	GCAATG	5 cut(s)	765, 2535, 2694, 3529, 3784
Bse8I	GATNNNNATC	1 cut(s)	1940
BseBI	CCWGG	7 cut(s)	940, 1197, 1235, 1293, 2286, 2775, 3816
BseJI	GATNNNNATC	1 cut(s)	1940
BseMI	GCAATG	5 cut(s)	765, 2535, 2694, 3529, 3784
BseMII	CTCAG	7 cut(s)	158, 372, 429, 475, 2408, 2465, 2933
BseNI	ACTGG	9 cut(s)	38, 135, 1031, 1042, 1187, 1345, 2467, 2476, 4058
BseRI	GAGGAG	3 cut(s)	55, 86, 896
BseSI	GKGCMC	1 cut(s)	188
BseYI	CCCAGC	1 cut(s)	795
BsgI	GTGCAG	6 cut(s)	176, 419, 1317, 1329, 1632, 2016
BsiHKAI	GWGCWC	4 cut(s)	250, 1100, 4041, 4298
BsiSI	CCGG	2 cut(s)	1945, 3892
BslFI	GGGAC	6 cut(s)	338, 1340, 1859, 2127, 3341, 3797
BsmAI	GTCTC	4 cut(s)	509, 1250, 1295, 3067
BsmFI	GGGAC	6 cut(s)	338, 1340, 1859, 2127, 3341, 3797
BsmI	GAATGC	2 cut(s)	1866, 4285
Bso31I	GGTCTC	2 cut(s)	1250, 3067
Bsp1286I	GDGCHC	6 cut(s)	188, 250, 462, 1100, 4041, 4298
Bsp1407I	TGTACA	1 cut(s)	1777
Bsp1720I	GCTNAGC	3 cut(s)	2137, 2394, 3215
Bsp19I	CCATGG	6 cut(s)	2082, 2736, 3572, 3988, 4214, 4259
BspACI	CCGC	9 cut(s)	37, 205, 1582, 1716, 2248, 2347, 2627, 2893, 3545
BspCNI	CTCAG	7 cut(s)	157, 373, 430, 474, 2407, 2464, 2932
BspHI	TCATGA	2 cut(s)	766, 1870
BspLI	GGNNCC	9 cut(s)	828, 1565, 2413, 2520, 2772, 3812, 3813, 3855, 4056
BspMAI	CTGCAG	4 cut(s)	1255, 2755, 2887, 3238
BspPI	GGATC	6 cut(s)	1465, 2174, 2513, 2526, 3848, 3861
BspQI	GCTCTTC	3 cut(s)	1088, 3150, 3994
BspTI	CTTAAG	2 cut(s)	497, 2309
BspTNI	GGTCTC	2 cut(s)	1250, 3067
BsrBI	CCGCTC	1 cut(s)	2248
BsrDI	GCAATG	5 cut(s)	765, 2535, 2694, 3529, 3784
BsrFI	RCCGGY	1 cut(s)	3891
BsrGI	TGTACA	1 cut(s)	1777
BsrI	ACTGG	9 cut(s)	38, 135, 1031, 1042, 1187, 1345, 2467, 2476, 4058
BssAI	RCCGGY	1 cut(s)	3891
BssSI	CACGAG	1 cut(s)	2262
Bst2BI	CACGAG	1 cut(s)	2262
Bst2UI	CCWGG	7 cut(s)	940, 1197, 1235, 1293, 2286, 2775, 3816
Bst6I	CTCTTC	4 cut(s)	1088, 3140, 3150, 3994
BstAFI	CTTAAG	2 cut(s)	497, 2309
BstAPI	GCANNNNNTGC	3 cut(s)	1370, 2747, 3554
BstAUI	TGTACA	1 cut(s)	1777
BstBAI	YACGTR	1 cut(s)	1229
BstC8I	GCNNGC	8 cut(s)	188, 1022, 1107, 1670, 1831, 3031, 3562, 3836
BstDSI	CCRYGG	7 cut(s)	2082, 2736, 3572, 3628, 3988, 4214, 4259
BstENI	CCTNNNNNAGG	1 cut(s)	159
BstH2I	RGCGCY	2 cut(s)	302, 4192
BstHHI	GCGC	2 cut(s)	301, 4191
BstMAI	GTCTC	4 cut(s)	509, 1250, 1295, 3067
BstNI	CCWGG	7 cut(s)	940, 1197, 1235, 1293, 2286, 2775, 3816
BstNSI	RCATGY	3 cut(s)	1672, 2484, 3334
BstSCI	CCNGG	8 cut(s)	938, 1195, 1233, 1291, 1944, 2284, 2773, 3814
BstSFI	CTRYAG	5 cut(s)	1251, 1278, 2751, 2883, 3234
BstSLI	GKGCMC	1 cut(s)	188
BstV2I	GAAGAC	2 cut(s)	18, 624
BstX2I	RGATCY	4 cut(s)	922, 1470, 2518, 3853
BstXI	CCANNNNNNTGG	2 cut(s)	425, 1883
BstYI	RGATCY	4 cut(s)	922, 1470, 2518, 3853
BsuI	GTATCC	5 cut(s)	1452, 1532, 3334, 4221, 4230
BtgI	CCRYGG	7 cut(s)	2082, 2736, 3572, 3628, 3988, 4214, 4259
BtrI	CACGTC	1 cut(s)	1756
BtsI	GCAGTG	5 cut(s)	96, 449, 3226, 3614, 4235
Cac8I	GCNNGC	8 cut(s)	188, 1022, 1107, 1670, 1831, 3031, 3562, 3836
CaiI	CAGNNNCTG	1 cut(s)	1026
CciI	TCATGA	2 cut(s)	766, 1870
CfoI	GCGC	2 cut(s)	301, 4191
Cfr10I	RCCGGY	1 cut(s)	3891
CseI	GACGC	1 cut(s)	2693
Csp6I	GTAC	7 cut(s)	703, 839, 1778, 2210, 2802, 3312, 3966
CspCI	CAANNNNNGTGG	2 cut(s)	250, 285
CviQI	GTAC	7 cut(s)	703, 839, 1778, 2210, 2802, 3312, 3966
EaeI	YGGCCR	3 cut(s)	121, 2628, 3031
Eam1104I	CTCTTC	4 cut(s)	1088, 3140, 3150, 3994
EarI	CTCTTC	4 cut(s)	1088, 3140, 3150, 3994
EciI	GGCGGA	1 cut(s)	52
Eco147I	AGGCCT	1 cut(s)	2032
Eco24I	GRGCYC	1 cut(s)	462
Eco31I	GGTCTC	2 cut(s)	1250, 3067
Eco32I	GATATC	2 cut(s)	1942, 3040
Eco47I	GGWCC	5 cut(s)	152, 602, 733, 3811, 3818
Eco47III	AGCGCT	1 cut(s)	4190
Eco57I	CTGAAG	3 cut(s)	494, 2996, 3174
Eco72I	CACGTG	1 cut(s)	1229
EcoNI	CCTNNNNNAGG	1 cut(s)	159
EcoO109I	RGGNCCY	6 cut(s)	152, 1691, 3001, 3811, 3818, 4250
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	7 cut(s)	938, 1195, 1233, 1291, 2284, 2773, 3814
EcoRV	GATATC	2 cut(s)	1942, 3040
EcoT38I	GRGCYC	1 cut(s)	462
FaqI	GGGAC	6 cut(s)	338, 1340, 1859, 2127, 3341, 3797
FauI	CCCGC	2 cut(s)	198, 1575
FauNDI	CATATG	1 cut(s)	1218
FbaI	TGATCA	2 cut(s)	1630, 2691
FblI	GTMKAC	1 cut(s)	2367
FriOI	GRGCYC	1 cut(s)	462
FspBI	CTAG	7 cut(s)	477, 1485, 1545, 3345, 3392, 3912, 4254
GlaI	GCGC	2 cut(s)	300, 4190
GsaI	CCCAGC	1 cut(s)	799
GsuI	CTGGAG	3 cut(s)	2493, 4041, 4282
HaeII	RGCGCY	2 cut(s)	302, 4192
HapII	CCGG	2 cut(s)	1945, 3892
HgaI	GACGC	1 cut(s)	2693
HhaI	GCGC	2 cut(s)	301, 4191
Hin6I	GCGC	2 cut(s)	299, 4189
HinP1I	GCGC	2 cut(s)	299, 4189
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HindIII	AAGCTT	4 cut(s)	485, 2233, 2633, 2843
HpaII	CCGG	2 cut(s)	1945, 3892
Hpy166II	GTNNAC	6 cut(s)	544, 618, 790, 1224, 2368, 4148
Hpy8I	GTNNAC	6 cut(s)	544, 618, 790, 1224, 2368, 4148
Hpy99I	CGWCG	1 cut(s)	26
HpyCH4IV	ACGT	5 cut(s)	841, 1228, 1755, 1899, 2116
HpySE526I	ACGT	5 cut(s)	841, 1228, 1755, 1899, 2116
HspAI	GCGC	2 cut(s)	299, 4189
KflI	GGGWCCC	1 cut(s)	3811
Ksp22I	TGATCA	2 cut(s)	1630, 2691
LguI	GCTCTTC	3 cut(s)	1088, 3150, 3994
MaeI	CTAG	7 cut(s)	477, 1485, 1545, 3345, 3392, 3912, 4254
MaeII	ACGT	5 cut(s)	841, 1228, 1755, 1899, 2116
MaeIII	GTNAC	9 cut(s)	676, 1229, 1850, 2039, 2377, 2581, 2827, 3253, 3292
MbiI	CCGCTC	1 cut(s)	2248
MfeI	CAATTG	2 cut(s)	1178, 1950
MflI	RGATCY	4 cut(s)	922, 1470, 2518, 3853
MhlI	GDGCHC	6 cut(s)	188, 250, 462, 1100, 4041, 4298
MlsI	TGGCCA	2 cut(s)	123, 3033
MluNI	TGGCCA	2 cut(s)	123, 3033
MlyI	GAGTC	3 cut(s)	673, 3893, 3923
MmeI	TCCRAC	6 cut(s)	848, 995, 1029, 2419, 2496, 3625
Mox20I	TGGCCA	2 cut(s)	123, 3033
MroXI	GAANNNNTTC	3 cut(s)	229, 1348, 3363
MscI	TGGCCA	2 cut(s)	123, 3033
MslI	CAYNNNNRTG	4 cut(s)	238, 1838, 2297, 3843
Msp20I	TGGCCA	2 cut(s)	123, 3033
MspA1I	CMGCKG	2 cut(s)	266, 3355
MspCI	CTTAAG	2 cut(s)	497, 2309
MspI	CCGG	2 cut(s)	1945, 3892
MspR9I	CCNGG	8 cut(s)	940, 1197, 1235, 1293, 1946, 2286, 2775, 3816
MunI	CAATTG	2 cut(s)	1178, 1950
Mva1269I	GAATGC	2 cut(s)	1866, 4285
MvaI	CCWGG	7 cut(s)	940, 1197, 1235, 1293, 2286, 2775, 3816
NciI	CCSGG	1 cut(s)	1946
NcoI	CCATGG	6 cut(s)	2082, 2736, 3572, 3988, 4214, 4259
NdeI	CATATG	1 cut(s)	1218
NlaIV	GGNNCC	9 cut(s)	828, 1565, 2413, 2520, 2772, 3812, 3813, 3855, 4056
NmeAIII	GCCGAG	1 cut(s)	3891
NmuCI	GTSAC	5 cut(s)	676, 1229, 2039, 2581, 2827
NspI	RCATGY	3 cut(s)	1672, 2484, 3334
PaeI	GCATGC	1 cut(s)	1672
PagI	TCATGA	2 cut(s)	766, 1870
PceI	AGGCCT	1 cut(s)	2032
PciI	ACATGT	1 cut(s)	3330
PciSI	GCTCTTC	3 cut(s)	1088, 3150, 3994
PcsI	WCGNNNNNNNCGW	1 cut(s)	1822
PctI	GAATGC	2 cut(s)	1866, 4285
PdmI	GAANNNNTTC	3 cut(s)	229, 1348, 3363
PfeI	GAWTC	8 cut(s)	967, 1320, 1390, 1427, 1531, 2289, 3674, 3724
PflMI	CCANNNNNTGG	3 cut(s)	130, 4230, 4290
PfoI	TCCNGGA	1 cut(s)	2773
PleI	GAGTC	3 cut(s)	673, 3892, 3923
PmaCI	CACGTG	1 cut(s)	1229
PmlI	CACGTG	1 cut(s)	1229
PpsI	GAGTC	3 cut(s)	673, 3892, 3923
Ppu21I	YACGTR	1 cut(s)	1229
PpuMI	RGGWCCY	3 cut(s)	152, 3811, 3818
PscI	ACATGT	1 cut(s)	3330
PshBI	ATTAAT	3 cut(s)	744, 888, 3102
Psp5II	RGGWCCY	3 cut(s)	152, 3811, 3818
Psp6I	CCWGG	7 cut(s)	938, 1195, 1233, 1291, 2284, 2773, 3814
PspCI	CACGTG	1 cut(s)	1229
PspFI	CCCAGC	1 cut(s)	795
PspGI	CCWGG	7 cut(s)	938, 1195, 1233, 1291, 2284, 2773, 3814
PspN4I	GGNNCC	9 cut(s)	828, 1565, 2413, 2520, 2772, 3812, 3813, 3855, 4056
PspPPI	RGGWCCY	3 cut(s)	152, 3811, 3818
PstI	CTGCAG	4 cut(s)	1255, 2755, 2887, 3238
PstNI	CAGNNNCTG	1 cut(s)	1026
PsuI	RGATCY	4 cut(s)	922, 1470, 2518, 3853
PvuII	CAGCTG	2 cut(s)	266, 3355
RsaI	GTAC	7 cut(s)	704, 840, 1779, 2211, 2803, 3313, 3967
RsaNI	GTAC	7 cut(s)	703, 839, 1778, 2210, 2802, 3312, 3966
RseI	CAYNNNNRTG	4 cut(s)	238, 1838, 2297, 3843
SapI	GCTCTTC	3 cut(s)	1088, 3150, 3994
ScaI	AGTACT	2 cut(s)	2211, 3313
SchI	GAGTC	3 cut(s)	673, 3893, 3923
ScrFI	CCNGG	8 cut(s)	940, 1197, 1235, 1293, 1946, 2286, 2775, 3816
SduI	GDGCHC	6 cut(s)	188, 250, 462, 1100, 4041, 4298
SfcI	CTRYAG	5 cut(s)	1251, 1278, 2751, 2883, 3234
SinI	GGWCC	5 cut(s)	152, 602, 733, 3811, 3818
SmiMI	CAYNNNNRTG	4 cut(s)	238, 1838, 2297, 3843
SmlI	CTYRAG	8 cut(s)	249, 497, 1147, 2201, 2309, 2957, 3071, 3822
SmoI	CTYRAG	8 cut(s)	249, 497, 1147, 2201, 2309, 2957, 3071, 3822
SpeI	ACTAGT	2 cut(s)	3344, 3911
SphI	GCATGC	1 cut(s)	1672
SseBI	AGGCCT	1 cut(s)	2032
SsiI	CCGC	9 cut(s)	37, 205, 1582, 1716, 2248, 2347, 2627, 2893, 3545
SspMI	CTAG	7 cut(s)	477, 1485, 1545, 3345, 3392, 3912, 4254
StuI	AGGCCT	1 cut(s)	2032
StyD4I	CCNGG	8 cut(s)	938, 1195, 1233, 1291, 1944, 2284, 2773, 3814
TaiI	ACGT	5 cut(s)	844, 1231, 1758, 1902, 2119
TaqI	TCGA	7 cut(s)	413, 647, 1730, 2190, 2244, 2360, 3508
TatI	WGTACW	4 cut(s)	1777, 2209, 2801, 3311
TauI	GCSGC	3 cut(s)	2630, 2896, 3548
TfiI	GAWTC	8 cut(s)	967, 1320, 1390, 1427, 1531, 2289, 3674, 3724
TseFI	GTSAC	5 cut(s)	676, 1229, 2039, 2581, 2827
Tsp45I	GTSAC	5 cut(s)	676, 1229, 2039, 2581, 2827
TspGWI	ACGGA	7 cut(s)	794, 979, 1200, 3438, 3617, 4106, 4282
Van91I	CCANNNNNTGG	3 cut(s)	130, 4230, 4290
Vha464I	CTTAAG	2 cut(s)	497, 2309
VpaK11BI	GGWCC	5 cut(s)	152, 602, 733, 3811, 3818
VspI	ATTAAT	3 cut(s)	744, 888, 3102
XagI	CCTNNNNNAGG	1 cut(s)	159
XapI	RAATTY	7 cut(s)	107, 532, 1044, 1450, 1514, 2421, 3362
XbaI	TCTAGA	1 cut(s)	3391
XceI	RCATGY	3 cut(s)	1672, 2484, 3334
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1231, 1883, 3493
XmiI	GTMKAC	1 cut(s)	2367
XmnI	GAANNNNTTC	3 cut(s)	229, 1348, 3363
XspI	CTAG	7 cut(s)	477, 1485, 1545, 3345, 3392, 3912, 4254
ZrmI	AGTACT	2 cut(s)	2211, 3313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.