Rmu_sc0001351.1_g000005

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001351.1
OG0013603
Physical Location & Seq
Forward (+)
12172 .. 12978
807 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 807 bp
atgttgctgcccaaggacctgaattcctggatgatcaagtatatcgacaatgtagtaaggtgcaatgttgaagagcttcatcttaagacaaacatacattcacaggaaccaatattctacgtggaatttcctgtttctcgttgcgaatcattaaggtatctatctgtcgagggaatgtttacaaatatccaaacacctcttagctccccctccttttctaatctcgaatgcctgaagttgaaagtagtttgtataccagatgaggggattttcaaatggatctcccattcttgcaaatgcatcaaggagttagtgttggaagacgtatatggttttggtatttggaatattaccatcgaaagctcatctttgaaatcatttagttttattttgaattgggtttccagttacaatcttattatcacctgtgagaaacttgaagacacatgcatctatttggggaagctgtgtcacacaggtggagcgctatgtttttcggcaccaaatcttaaaaatttgaaatggagtggacacgtgatgatgttccaagacttgagcgaattcctgagtttagaaaaagctgagattgagctagaccccctggtgattgactttaacaatgtattcaagccgcttcatggtattcgaagtgctaaagtcgttctggatttatctcaaaggaccatgaagtgtctgcacgagggaggttcaacgccagaacgactacaactacataatgtttgttgtttaagaattcgtggtttgagcttaatggatgatgatgtccccgctatggtctccctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

268

Amino Acids

30.53

Weight (kDa)

5.77

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 18 - 135 7.9e-08 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 499
AccI GTMKAC 1 cut(s) 253
AciI CCGC 2 cut(s) 632, 789
AclWI GGATC 1 cut(s) 287
AcsI RAATTY 5 cut(s) 22, 125, 514, 560, 753
AcuI CTGAAG 1 cut(s) 254
AcvI CACGTG 1 cut(s) 535
AfeI AGCGCT 1 cut(s) 486
AfiI CCNNNNNNNGG 3 cut(s) 263, 638, 793
AflII CTTAAG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 532
AgsI TTSAA 9 cut(s) 71, 241, 274, 373, 394, 440, 520, 628, 711
AjnI CCWGG 2 cut(s) 26, 600
AleI CACNNNNGTG 1 cut(s) 477
AluBI AGCT 7 cut(s) 76, 204, 363, 466, 581, 592, 768
AluI AGCT 7 cut(s) 76, 204, 363, 466, 581, 592, 768
Alw26I GTCTC 1 cut(s) 802
AlwI GGATC 1 cut(s) 287
Aor51HI AGCGCT 1 cut(s) 486
ApeKI GCWGC 1 cut(s) 7
ApoI RAATTY 5 cut(s) 22, 125, 514, 560, 753
Asp700I GAANNNNTTC 1 cut(s) 75
AspLEI GCGC 1 cut(s) 487
AspS9I GGNCC 2 cut(s) 16, 681
AsuHPI GGTGA 2 cut(s) 415, 616
AsuII TTCGAA 1 cut(s) 646
AvaII GGWCC 2 cut(s) 16, 681
BanI GGYRCC 1 cut(s) 499
BauI CACGAG 1 cut(s) 698
BbrPI CACGTG 1 cut(s) 535
BbsI GAAGAC 2 cut(s) 327, 447
BccI CCATC 1 cut(s) 362
BciT130I CCWGG 2 cut(s) 28, 602
BclI TGATCA 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 802
BfaI CTAG 1 cut(s) 593
BfoI RGCGCY 1 cut(s) 488
BfrI CTTAAG 1 cut(s) 83
BisI GCNGC 2 cut(s) 8, 632
BlsI GCNGC 2 cut(s) 9, 633
Bme1390I CCNGG 2 cut(s) 28, 602
Bme18I GGWCC 2 cut(s) 16, 681
BmgT120I GGNCC 2 cut(s) 16, 681
BmiI GGNNCC 2 cut(s) 108, 501
BmrFI CCNGG 2 cut(s) 28, 602
BmsI GCATC 2 cut(s) 309, 459
BpiI GAAGAC 2 cut(s) 327, 447
Bpu14I TTCGAA 1 cut(s) 646
BpuEI CTTGAG 1 cut(s) 574
BsaAI YACGTR 2 cut(s) 121, 535
BsaI GGTCTC 1 cut(s) 802
BsaJI CCNNGG 2 cut(s) 12, 600
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 3 cut(s) 263, 638, 793
Bse1I ACTGG 1 cut(s) 405
Bse3DI GCAATG 1 cut(s) 70
BseBI CCWGG 2 cut(s) 28, 602
BseDI CCNNGG 2 cut(s) 12, 600
BseGI GGATG 2 cut(s) 36, 781
BseLI CCNNNNNNNGG 3 cut(s) 263, 638, 793
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 2 cut(s) 557, 573
BseNI ACTGG 1 cut(s) 405
BsgI GTGCAG 1 cut(s) 680
BshNI GGYRCC 1 cut(s) 499
BslFI GGGAC 1 cut(s) 770
BslI CCNNNNNNNGG 3 cut(s) 263, 638, 793
BsmAI GTCTC 1 cut(s) 802
BsmFI GGGAC 1 cut(s) 770
BsmI GAATGC 1 cut(s) 233
Bso31I GGTCTC 1 cut(s) 802
Bsp119I TTCGAA 1 cut(s) 646
Bsp143I GATC 2 cut(s) 33, 279
BspACI CCGC 2 cut(s) 632, 789
BspCNI CTCAG 2 cut(s) 558, 574
BspLI GGNNCC 2 cut(s) 108, 501
BspPI GGATC 1 cut(s) 287
BspQI GCTCTTC 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 646
BspT107I GGYRCC 1 cut(s) 499
BspTI CTTAAG 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 802
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 405
BssECI CCNNGG 2 cut(s) 12, 600
BssMI GATC 2 cut(s) 33, 279
BssNAI GTATAC 1 cut(s) 254
BssSI CACGAG 1 cut(s) 698
BssT1I CCWWGG 1 cut(s) 12
Bst1107I GTATAC 1 cut(s) 254
Bst2BI CACGAG 1 cut(s) 698
Bst2UI CCWGG 2 cut(s) 28, 602
Bst6I CTCTTC 1 cut(s) 66
BstAFI CTTAAG 1 cut(s) 83
BstBAI YACGTR 2 cut(s) 121, 535
BstBI TTCGAA 1 cut(s) 646
BstDEI CTNAG 3 cut(s) 200, 566, 582
BstF5I GGATG 2 cut(s) 36, 781
BstH2I RGCGCY 1 cut(s) 488
BstHHI GCGC 1 cut(s) 487
BstKTI GATC 2 cut(s) 36, 282
BstMAI GTCTC 1 cut(s) 802
BstMBI GATC 2 cut(s) 33, 279
BstNI CCWGG 2 cut(s) 28, 602
BstNSI RCATGY 1 cut(s) 450
BstSCI CCNGG 2 cut(s) 26, 600
BstV2I GAAGAC 2 cut(s) 327, 447
BstX2I RGATCY 1 cut(s) 279
BstYI RGATCY 1 cut(s) 279
BstZ17I GTATAC 1 cut(s) 254
BtsCI GGATG 2 cut(s) 36, 781
CfoI GCGC 1 cut(s) 487
Cfr13I GGNCC 2 cut(s) 16, 681
CviAII CATG 3 cut(s) 447, 638, 685
CviJI RGCY 8 cut(s) 76, 204, 363, 466, 581, 592, 631, 768
CviKI_1 RGCY 8 cut(s) 76, 204, 363, 466, 581, 592, 631, 768
DdeI CTNAG 3 cut(s) 200, 566, 582
DpnI GATC 2 cut(s) 35, 281
DpnII GATC 2 cut(s) 33, 279
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 802
Eco47I GGWCC 2 cut(s) 16, 681
Eco47III AGCGCT 1 cut(s) 486
Eco57I CTGAAG 1 cut(s) 254
Eco72I CACGTG 1 cut(s) 535
EcoO109I RGGNCCY 1 cut(s) 16
EcoRI GAATTC 3 cut(s) 22, 560, 753
EcoRII CCWGG 2 cut(s) 26, 600
EcoT14I CCWWGG 1 cut(s) 12
EcoT22I ATGCAT 2 cut(s) 302, 452
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 3 cut(s) 450, 641, 688
FalI AAGNNNNNCTT 2 cut(s) 352, 384
FaqI GGGAC 1 cut(s) 770
FatI CATG 3 cut(s) 446, 637, 684
FauI CCCGC 1 cut(s) 796
FbaI TGATCA 1 cut(s) 33
FblI GTMKAC 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 8, 632
FokI GGATG 2 cut(s) 43, 788
Fsp4HI GCNGC 2 cut(s) 8, 632
FspBI CTAG 1 cut(s) 593
GlaI GCGC 1 cut(s) 486
GluI GCNGC 2 cut(s) 8, 632
HaeII RGCGCY 1 cut(s) 488
HhaI GCGC 1 cut(s) 487
Hin1II CATG 3 cut(s) 450, 641, 688
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HinfI GANTC 1 cut(s) 146
HphI GGTGA 2 cut(s) 415, 616
Hpy166II GTNNAC 3 cut(s) 180, 254, 530
Hpy188III TCNNGA 3 cut(s) 224, 565, 665
Hpy8I GTNNAC 3 cut(s) 180, 254, 530
HpyCH4IV ACGT 3 cut(s) 120, 324, 534
HpyCH4V TGCA 5 cut(s) 63, 294, 300, 450, 697
HpyF3I CTNAG 3 cut(s) 200, 566, 582
HpySE526I ACGT 3 cut(s) 120, 324, 534
Hsp92II CATG 3 cut(s) 450, 641, 688
HspAI GCGC 1 cut(s) 485
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 2 cut(s) 33, 279
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 2 cut(s) 209, 482
LweI GCATC 2 cut(s) 309, 459
MaeI CTAG 1 cut(s) 593
MaeII ACGT 3 cut(s) 120, 324, 534
MaeIII GTNAC 2 cut(s) 407, 470
MalI GATC 2 cut(s) 35, 281
MboI GATC 2 cut(s) 33, 279
MboII GAAGA 3 cut(s) 83, 332, 452
MflI RGATCY 1 cut(s) 279
MluCI AATT 6 cut(s) 22, 125, 394, 514, 560, 753
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 6 cut(s) 163, 207, 220, 256, 694, 698
Mph1103I ATGCAT 2 cut(s) 302, 452
MroXI GAANNNNTTC 1 cut(s) 75
MseI TTAA 6 cut(s) 84, 152, 510, 615, 749, 770
MslI CAYNNNNRTG 1 cut(s) 477
MspCI CTTAAG 1 cut(s) 83
MspR9I CCNGG 2 cut(s) 28, 602
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 2 cut(s) 28, 602
NdeII GATC 2 cut(s) 33, 279
NlaIII CATG 3 cut(s) 450, 641, 688
NlaIV GGNNCC 2 cut(s) 108, 501
NmuCI GTSAC 1 cut(s) 470
NsiI ATGCAT 2 cut(s) 302, 452
NspI RCATGY 1 cut(s) 450
NspV TTCGAA 1 cut(s) 646
OliI CACNNNNGTG 1 cut(s) 477
PciSI GCTCTTC 1 cut(s) 66
PctI GAATGC 1 cut(s) 233
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 26
PkrI GCNGC 2 cut(s) 9, 633
PmaCI CACGTG 1 cut(s) 535
PmlI CACGTG 1 cut(s) 535
Ppu21I YACGTR 2 cut(s) 121, 535
PpuMI RGGWCCY 1 cut(s) 16
Psp5II RGGWCCY 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 26, 600
PspCI CACGTG 1 cut(s) 535
PspGI CCWGG 2 cut(s) 26, 600
PspN4I GGNNCC 2 cut(s) 108, 501
PspPI GGNCC 2 cut(s) 16, 681
PspPPI RGGWCCY 1 cut(s) 16
PsuI RGATCY 1 cut(s) 279
RseI CAYNNNNRTG 1 cut(s) 477
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 6 cut(s) 84, 152, 510, 615, 749, 770
SatI GCNGC 2 cut(s) 8, 632
Sau3AI GATC 2 cut(s) 33, 279
Sau96I GGNCC 2 cut(s) 16, 681
ScrFI CCNGG 2 cut(s) 28, 602
SfaNI GCATC 2 cut(s) 309, 459
SfuI TTCGAA 1 cut(s) 646
SinI GGWCC 2 cut(s) 16, 681
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 2 cut(s) 83, 553
SmoI CTYRAG 2 cut(s) 83, 553
Sse9I AATT 6 cut(s) 22, 125, 394, 514, 560, 753
SsiI CCGC 2 cut(s) 632, 789
SspI AATATT 2 cut(s) 114, 349
SspMI CTAG 1 cut(s) 593
StyD4I CCNGG 2 cut(s) 26, 600
StyI CCWWGG 1 cut(s) 12
TaiI ACGT 3 cut(s) 123, 327, 537
TaqI TCGA 5 cut(s) 45, 168, 225, 357, 646
TasI AATT 6 cut(s) 22, 125, 394, 514, 560, 753
TauI GCSGC 1 cut(s) 634
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 6 cut(s) 84, 152, 510, 615, 749, 770
Tru9I TTAA 6 cut(s) 84, 152, 510, 615, 749, 770
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 3 cut(s) 68, 626, 701
Vha464I CTTAAG 1 cut(s) 83
VpaK11BI GGWCC 2 cut(s) 16, 681
XapI RAATTY 5 cut(s) 22, 125, 514, 560, 753
XceI RCATGY 1 cut(s) 450
XmiI GTMKAC 1 cut(s) 253
XmnI GAANNNNTTC 1 cut(s) 75
XspI CTAG 1 cut(s) 593
Zsp2I ATGCAT 2 cut(s) 302, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.