Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001438.1

Orthogroup ID

OG0006434

Physical Location & Seq

Genomic Coordinates Reverse (-)

141024 .. 142854

Gene Structure 1831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgcagatgttcttcagtgcattaataatagatgttgctgggcatgctggaaagctagatgctgcctttgaaatcatacaggaagccagaaatcgaggaatacaagttggaactgtatcatatagctcattgacgggcacatgtagcaatgccaaaaattggcagaaagcactggagctctatgaggatcttaagtcagctaaaattgagcagactgtttcaactgtcaatgctttgattactgccctatgtgatggggatcaactacaaaaggctatggaagttctgtcggaaatgaagagtataggactgcgtccaaacagtataacatactccacacttgtagtggcaagtgaaaagaaggatgatctagaagctggcctgctgctcctttctcaagctgaaaaggataaagttgttccaaaccttgtcatgtgtagatgcattataggcatgtgcttacggagatttgagaaggcatgtacattgggtgaaactgtcttgccacatttgtctcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

173

Amino Acids

18.91

Weight (kDa)

5.93

Isoelectric Point (pI)

31.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	14 - 121	1.7e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	25 - 83	3.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	38 - 85	1.5e-06	PPR repeat family
PPR_3	PF13812	61 - 115	5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	72 - 115	1e-11	PPR repeat family
PPR_3	PF13812	95 - 153	8e-06	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006434)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010047 RLG00000020064 RLG00000028774
rosa_multiflora	Rmu_sc0001306.1_g000022 Rmu_sc0001438.1_g000035
rosa_roxburghii	Rroxscaffold_2G00101450 Rroxscaffold_7G00192090
rosa_rugosa	Rorug05G0119200 Rorug05G0119300 Rorug05G0119400 Rorug05G0119500 Rorug05G0119600 Rorug05G0119600 Rorug05G0119700 Rorug05G0119800 Rorug05G0119900 Rorug05G0120000
rosa_samantha	Rh2AG339800 Rh2AG437400 Rh2CG423700 Rh2DG357000 Rh2DG455400 Rh3CG365400 Rh6BG318500 Rh6CG026900 Rh7AG270000 Rh7CG289200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	159
AclWI	GGATC	2 cut(s)	195, 267
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	1 cut(s)	159
AflII	CTTAAG	1 cut(s)	191
AflIII	ACRYGT	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	71, 222
AluBI	AGCT	6 cut(s)	55, 126, 178, 200, 377, 401
AluI	AGCT	6 cut(s)	55, 126, 178, 200, 377, 401
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	2 cut(s)	195, 267
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	2 cut(s)	62, 385
AseI	ATTAAT	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	49, 372
BccI	CCATC	1 cut(s)	248
BfaI	CTAG	2 cut(s)	56, 371
BfrI	CTTAAG	1 cut(s)	191
BisI	GCNGC	2 cut(s)	63, 386
BlsI	GCNGC	2 cut(s)	64, 387
BmsI	GCATC	2 cut(s)	49, 431
BpmI	CTGGAG	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	381
BsaBI	GATNNNNATC	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	258
BseGI	GGATG	1 cut(s)	370
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	154
BseNI	ACTGG	1 cut(s)	177
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	49, 372
BseYI	CCCAGC	1 cut(s)	38
BshFI	GGCC	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	159
BsnI	GGCC	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	140, 180
Bsp1407I	TGTACA	1 cut(s)	482
Bsp143I	GATC	3 cut(s)	187, 259, 367
BspANI	GGCC	1 cut(s)	381
BspPI	GGATC	2 cut(s)	195, 267
BspTI	CTTAAG	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	154
BsrGI	TGTACA	1 cut(s)	482
BsrI	ACTGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	187, 259, 367
Bst4CI	ACNGT	5 cut(s)	115, 217, 226, 323, 499
Bst6I	CTCTTC	1 cut(s)	293
BstAFI	CTTAAG	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	482
BstC8I	GCNNGC	3 cut(s)	45, 379, 383
BstF5I	GGATG	1 cut(s)	370
BstKTI	GATC	3 cut(s)	190, 262, 370
BstMBI	GATC	3 cut(s)	187, 259, 367
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 144, 450
BstNSI	RCATGY	4 cut(s)	47, 144, 457, 483
BstSLI	GKGCMC	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	49, 372
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	370
BtsIMutI	CAGTG	2 cut(s)	22, 170
Cac8I	GCNNGC	3 cut(s)	45, 379, 383
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	5 cut(s)	44, 141, 433, 454, 480
CviJI	RGCY	9 cut(s)	55, 86, 126, 178, 200, 275, 377, 381, 401
CviKI_1	RGCY	9 cut(s)	55, 86, 126, 178, 200, 275, 377, 381, 401
CviQI	GTAC	1 cut(s)	483
DpnI	GATC	3 cut(s)	189, 261, 369
DpnII	GATC	3 cut(s)	187, 259, 367
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Ecl136II	GAGCTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	178
EcoT22I	ATGCAT	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	180
FaeI	CATG	5 cut(s)	47, 144, 436, 457, 483
FatI	CATG	5 cut(s)	43, 140, 432, 453, 479
Fnu4HI	GCNGC	2 cut(s)	63, 386
FokI	GGATG	1 cut(s)	377
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	2 cut(s)	63, 386
FspBI	CTAG	2 cut(s)	56, 371
GluI	GCNGC	2 cut(s)	63, 386
GsaI	CCCAGC	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	381
HgaI	GACGC	1 cut(s)	302
Hin1II	CATG	5 cut(s)	47, 144, 436, 457, 483
HphI	GGTGA	1 cut(s)	503
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	1 cut(s)	371
HpyAV	CCTTC	2 cut(s)	355, 469
HpyCH4III	ACNGT	5 cut(s)	115, 217, 226, 323, 499
HpyCH4V	TGCA	3 cut(s)	4, 20, 444
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 144, 450
Hsp92II	CATG	5 cut(s)	47, 144, 436, 457, 483
Kzo9I	GATC	3 cut(s)	187, 259, 367
LmnI	GCTCC	2 cut(s)	175, 393
LpnPI	CCDG	7 cut(s)	24, 33, 65, 100, 158, 363, 395
Lsp1109I	GCAGC	2 cut(s)	49, 372
LweI	GCATC	2 cut(s)	49, 431
MaeI	CTAG	2 cut(s)	56, 371
MalI	GATC	3 cut(s)	189, 261, 369
MboI	GATC	3 cut(s)	187, 259, 367
MboII	GAAGA	2 cut(s)	4, 310
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	140, 180
MluCI	AATT	2 cut(s)	157, 204
MmeI	TCCRAC	2 cut(s)	88, 270
MnlI	CCTC	2 cut(s)	89, 178
Mph1103I	ATGCAT	1 cut(s)	446
MseI	TTAA	2 cut(s)	23, 192
MspCI	CTTAAG	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	44, 144, 450
NdeII	GATC	3 cut(s)	187, 259, 367
NlaIII	CATG	5 cut(s)	47, 144, 436, 457, 483
NsiI	ATGCAT	1 cut(s)	446
NspI	RCATGY	4 cut(s)	47, 144, 457, 483
PaeI	GCATGC	1 cut(s)	47
PciI	ACATGT	1 cut(s)	140
PflFI	GACNNNGTC	1 cut(s)	312
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	64, 387
PscI	ACATGT	1 cut(s)	140
PshBI	ATTAAT	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	180
PspFI	CCCAGC	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	187
PsyI	GACNNNGTC	1 cut(s)	312
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	23, 192
SatI	GCNGC	2 cut(s)	63, 386
Sau3AI	GATC	3 cut(s)	187, 259, 367
SduI	GDGCHC	2 cut(s)	140, 180
SetI	ASST	7 cut(s)	57, 128, 180, 202, 379, 403, 429
SfaNI	GCATC	2 cut(s)	49, 431
SmlI	CTYRAG	2 cut(s)	191, 396
SmoI	CTYRAG	2 cut(s)	191, 396
SphI	GCATGC	1 cut(s)	47
Sse9I	AATT	2 cut(s)	157, 204
SspMI	CTAG	2 cut(s)	56, 371
SstI	GAGCTC	1 cut(s)	180
TaaI	ACNGT	5 cut(s)	115, 217, 226, 323, 499
TaqI	TCGA	1 cut(s)	94
TasI	AATT	2 cut(s)	157, 204
TatI	WGTACW	1 cut(s)	482
Tru1I	TTAA	2 cut(s)	23, 192
Tru9I	TTAA	2 cut(s)	23, 192
TscAI	CASTG	2 cut(s)	22, 177
TseI	GCWGC	2 cut(s)	62, 385
TspDTI	ATGAA	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	2 cut(s)	22, 177
Tth111I	GACNNNGTC	1 cut(s)	312
Van91I	CCANNNNNTGG	1 cut(s)	159
Vha464I	CTTAAG	1 cut(s)	191
VspI	ATTAAT	1 cut(s)	23
XbaI	TCTAGA	1 cut(s)	370
XceI	RCATGY	4 cut(s)	47, 144, 457, 483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XspI	CTAG	2 cut(s)	56, 371
Zsp2I	ATGCAT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.