Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001493.1

Orthogroup ID

OG0015768

Physical Location & Seq

Genomic Coordinates Reverse (-)

4648 .. 5073

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgctggtgttgggtgggtatgatggtatagggccggtggcggaagtctctcacaatcttctggagatttgggtcgttgttaagggtctcccacaggtgctcctgaacaagaaggcgctagggttggttggggtgtctattggttgtgttgtccgctttgaccagacagcccttaatcagaaggaagaggagcagcgtatccgtcttgtacttgacatgtgtgatagggttcggggttggatggtgtttgagttttcgccgatggtggtactggagttgacgttggtgtacgagaagctaaagggattttgccgtaattatgggctgttcatacacgatgcggcaggatgtgattcattgctggtgaaggaaagagaagagatttgtgacaaatctcagctgcggctatggctggactctctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523

Pfam Domains

Protein Families

DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

141

Amino Acids

15.95

Weight (kDa)

5.41

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015768)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006880 RLG00000011720 RLG00000033056
rosa_multiflora	Rmu_co8363351.1_g000001 Rmu_sc0001493.1_g000002 Rmu_sc0001493.1_g000003 Rmu_sc0002219.1_g000021 Rmu_sc0005344.1_g000005 Rmu_sc0007230.1_g000001 Rmu_sc0014815.1_g000002
rosa_roxburghii	Rroxscaffold_2G00151970
rosa_rugosa	Rorug01G0483500
rosa_samantha	Rh2CG394900 Rh3DG198200 Rh3DG224800 Rh7BG078200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	41, 154, 341, 403
AfaI	GTAC	3 cut(s)	210, 270, 290
AflIII	ACRYGT	1 cut(s)	216
AluBI	AGCT	2 cut(s)	298, 400
AluI	AGCT	2 cut(s)	298, 400
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	52, 92
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	2 cut(s)	193, 400
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	376
BaeI	ACNNNNGTAYC	2 cut(s)	260, 293
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	205, 387
BccI	CCATC	3 cut(s)	17, 235, 256
BceAI	ACGGC	1 cut(s)	297
BciVI	GTATCC	1 cut(s)	209
BcoDI	GTCTC	2 cut(s)	52, 92
BfaI	CTAG	1 cut(s)	119
BfoI	RGCGCY	1 cut(s)	119
BfuI	GTATCC	1 cut(s)	209
BisI	GCNGC	4 cut(s)	194, 342, 401, 404
BlsI	GCNGC	4 cut(s)	195, 343, 402, 405
BmgT120I	GGNCC	1 cut(s)	32
BmsI	GCATC	1 cut(s)	328
BpmI	CTGGAG	2 cut(s)	83, 293
BsaI	GGTCTC	1 cut(s)	92
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 266, 296
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	356
BseGI	GGATG	2 cut(s)	246, 353
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	205, 387
BshFI	GGCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	35
BsmAI	GTCTC	2 cut(s)	52, 92
BsnI	GGCC	1 cut(s)	34
Bso31I	GGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	102
BspACI	CCGC	4 cut(s)	41, 154, 341, 403
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	409
BspTNI	GGTCTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	356
BsrFI	RCCGGY	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	34
Bst6I	CTCTTC	2 cut(s)	180, 372
BstDEI	CTNAG	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	246, 353
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	118
BstMAI	GTCTC	2 cut(s)	52, 92
BstMWI	GCNNNNNNNGC	1 cut(s)	409
BstNSI	RCATGY	1 cut(s)	220
BstV1I	GCAGC	2 cut(s)	205, 387
BsuI	GTATCC	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	34
BtsCI	GGATG	2 cut(s)	246, 353
CfoI	GCGC	1 cut(s)	118
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	3 cut(s)	209, 269, 289
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	7 cut(s)	34, 170, 298, 325, 400, 406, 412
CviKI_1	RGCY	7 cut(s)	34, 170, 298, 325, 400, 406, 412
CviQI	GTAC	3 cut(s)	209, 269, 289
DdeI	CTNAG	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	180, 372
EarI	CTCTTC	2 cut(s)	180, 372
EciI	GGCGGA	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	92
FaeI	CATG	1 cut(s)	220
FaiI	YATR	6 cut(s)	21, 29, 218, 321, 332, 409
FatI	CATG	1 cut(s)	216
Fnu4HI	GCNGC	4 cut(s)	194, 342, 401, 404
FokI	GGATG	2 cut(s)	253, 360
Fsp4HI	GCNGC	4 cut(s)	194, 342, 401, 404
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	4 cut(s)	194, 342, 401, 404
GsuI	CTGGAG	2 cut(s)	83, 293
HaeII	RGCGCY	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HinfI	GANTC	2 cut(s)	353, 416
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	376
Hpy166II	GTNNAC	2 cut(s)	279, 289
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	2 cut(s)	62, 103
Hpy8I	GTNNAC	2 cut(s)	279, 289
HpyAV	CCTTC	3 cut(s)	106, 175, 361
HpyCH4IV	ACGT	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	409
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	1 cut(s)	281
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	1 cut(s)	116
LmnI	GCTCC	2 cut(s)	105, 190
LpnPI	CCDG	9 cut(s)	47, 48, 80, 116, 176, 257, 330, 347, 398
Lsp1109I	GCAGC	2 cut(s)	205, 387
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	386
MboII	GAAGA	3 cut(s)	50, 197, 389
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	1 cut(s)	316
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	1 cut(s)	181
MseI	TTAA	2 cut(s)	81, 174
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	409
NlaIII	CATG	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	386
NspI	RCATGY	1 cut(s)	220
PciI	ACATGT	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	4 cut(s)	195, 343, 402, 405
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
PscI	ACATGT	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	3 cut(s)	210, 270, 290
RsaNI	GTAC	3 cut(s)	209, 269, 289
SaqAI	TTAA	2 cut(s)	81, 174
SatI	GCNGC	4 cut(s)	194, 342, 401, 404
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	410
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	4 cut(s)	99, 284, 300, 402
SfaNI	GCATC	1 cut(s)	328
Sse9I	AATT	1 cut(s)	316
SsiI	CCGC	4 cut(s)	41, 154, 341, 403
SspMI	CTAG	1 cut(s)	119
TaiI	ACGT	1 cut(s)	284
TasI	AATT	1 cut(s)	316
TatI	WGTACW	1 cut(s)	208
TauI	GCSGC	2 cut(s)	344, 406
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	2 cut(s)	81, 174
Tru9I	TTAA	2 cut(s)	81, 174
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	2 cut(s)	193, 400
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	2 cut(s)	319, 345
TspGWI	ACGGA	1 cut(s)	191
XceI	RCATGY	1 cut(s)	220
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.