Rmu_sc0001501.1_g000034

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001501.1
OG0011600
Physical Location & Seq
Reverse (-)
133012 .. 136657
3646 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 987 bp
atgccttcccggcttgctttcttggacctaaagacttctccttcgatgattactgctttaatgaataccctctctttgggaagcgacgaactaattcactcacctgaaggcgagcgacaccgaagcgaagtaactagaactccaagcgaagtaagacacgacatcgatggttctgaaagaaagcaaaaggtatccgcagcgtcagcgagccaaaaaaggaagggtgaaattgtgatggtgaatcttcggagcttaagagtgaggtttgggatgctcaggatggcaattgtggtggatgctacagtctcctgcaggcttaagattgaaaggaggattccttttcggctagagatggtttcacttgacaatctccttataccatctatccaagctggcggttcattatatgatgttgatattgttcatcgaataccgccttacctgagcttacaaaagttcattgctatgattgaaatcctgccttattatgctcgtgtcatcgatgatgggctttacagggtgggcgggcatgcaatcaatgagttaaatggctactccttactctacttgcagcgcgcagacgcagtcttgtccaccagagcgtcgatgaacgaagcggtcccaccgccaggggaaggactagaaccttcagcagtctctgctcctgtggttggaaccggacttactaaccttgctaaccgagccccaattcttcaataccaacaggcagacgtatttatagccacgaagattcaagtgtattcggggcgtgagcttgattgcctttcctggcaaaacttctttgactacataggcccgcttgaactttcctctaggatcatggagaggggtccaattctcgctcagcttcagcttcacaggttggatatgtctgatctttaccttcttatggaaagctttggcattcctcctttgagaaccctgcgtatggtggagtgccttcatcctctgctcttcatcagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

328

Amino Acids

36.7

Weight (kDa)

7.06

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 84 - 144 2.9e-12 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 576
AciI CCGC 7 cut(s) 195, 396, 434, 525, 617, 626, 818
AclWI GGATC 1 cut(s) 845
AcuI CTGAAG 3 cut(s) 126, 633, 854
AfiI CCNNNNNNNGG 6 cut(s) 76, 629, 635, 671, 910, 949
AflII CTTAAG 2 cut(s) 253, 317
AgsI TTSAA 5 cut(s) 326, 473, 716, 755, 824
AjnI CCWGG 2 cut(s) 628, 788
AluBI AGCT 8 cut(s) 252, 392, 447, 775, 868, 874, 918, 984
AluI AGCT 8 cut(s) 252, 392, 447, 775, 868, 874, 918, 984
Alw26I GTCTC 2 cut(s) 310, 661
AlwI GGATC 1 cut(s) 845
AlwNI CAGNNNCTG 1 cut(s) 659
AoxI GGCC 1 cut(s) 814
ApeKI GCWGC 2 cut(s) 197, 571
ArsI GACNNNNNNTTYG 2 cut(s) 25, 57
Asp700I GAANNNNTTC 1 cut(s) 93
AspLEI GCGC 2 cut(s) 576, 578
AspS9I GGNCC 4 cut(s) 25, 619, 815, 851
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 3 cut(s) 93, 236, 250
AvaII GGWCC 3 cut(s) 25, 619, 851
BanII GRGCYC 1 cut(s) 706
BauI CACGAG 1 cut(s) 492
BbvI GCAGC 2 cut(s) 209, 583
BccI CCATC 6 cut(s) 161, 229, 274, 346, 388, 500
BciT130I CCWGG 2 cut(s) 630, 790
BciVI GTATCC 1 cut(s) 202
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 2 cut(s) 310, 661
BfaI CTAG 4 cut(s) 135, 347, 641, 834
BfmI CTRYAG 2 cut(s) 300, 310
BfrI CTTAAG 2 cut(s) 253, 317
BfuI GTATCC 1 cut(s) 202
BglI GCCNNNNNGGC 1 cut(s) 10
BisI GCNGC 2 cut(s) 198, 572
BlpI GCTNAGC 1 cut(s) 864
BlsI GCNGC 2 cut(s) 199, 573
Bme1390I CCNGG 3 cut(s) 10, 630, 790
Bme18I GGWCC 3 cut(s) 25, 619, 851
BmgT120I GGNCC 4 cut(s) 25, 619, 815, 851
BmiI GGNNCC 3 cut(s) 621, 676, 852
BmrFI CCNGG 3 cut(s) 10, 630, 790
BmsI GCATC 2 cut(s) 261, 286
Bpu10I CCTNAGC 2 cut(s) 275, 443
Bpu1102I GCTNAGC 1 cut(s) 864
BpuMI CCSGG 1 cut(s) 10
Bsa29I ATCGAT 2 cut(s) 165, 501
BsaBI GATNNNNATC 1 cut(s) 473
BsaJI CCNNGG 1 cut(s) 629
BsaWI WCCGGW 1 cut(s) 677
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 6 cut(s) 76, 629, 635, 671, 910, 949
Bse3DI GCAATG 1 cut(s) 459
Bse8I GATNNNNATC 1 cut(s) 473
BseBI CCWGG 2 cut(s) 630, 790
BseCI ATCGAT 2 cut(s) 165, 501
BseDI CCNNGG 1 cut(s) 629
BseGI GGATG 4 cut(s) 276, 285, 301, 964
BseJI GATNNNNATC 1 cut(s) 473
BseLI CCNNNNNNNGG 6 cut(s) 76, 629, 635, 671, 910, 949
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 3 cut(s) 289, 434, 878
BsePI GCGCGC 1 cut(s) 574
BseXI GCAGC 2 cut(s) 209, 583
Bsh1236I CGCG 1 cut(s) 576
BshFI GGCC 1 cut(s) 816
BshVI ATCGAT 2 cut(s) 165, 501
BsiSI CCGG 2 cut(s) 10, 678
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 6 cut(s) 76, 629, 635, 671, 910, 949
BsmAI GTCTC 2 cut(s) 310, 661
BsmFI GGGAC 1 cut(s) 605
BsmI GAATGC 1 cut(s) 924
BsnI GGCC 1 cut(s) 816
Bsp1286I GDGCHC 1 cut(s) 706
Bsp143I GATC 2 cut(s) 837, 895
Bsp1720I GCTNAGC 1 cut(s) 864
BspACI CCGC 7 cut(s) 195, 396, 434, 525, 617, 626, 818
BspANI GGCC 1 cut(s) 816
BspCNI CTCAG 3 cut(s) 288, 435, 877
BspDI ATCGAT 2 cut(s) 165, 501
BspFNI CGCG 1 cut(s) 576
BspLI GGNNCC 3 cut(s) 621, 676, 852
BspMAI CTGCAG 1 cut(s) 314
BspPI GGATC 1 cut(s) 845
BspQI GCTCTTC 1 cut(s) 980
BspTI CTTAAG 2 cut(s) 253, 317
BsrDI GCAATG 1 cut(s) 459
BssECI CCNNGG 1 cut(s) 629
BssHII GCGCGC 1 cut(s) 574
BssMI GATC 2 cut(s) 837, 895
BssSI CACGAG 1 cut(s) 492
Bst2BI CACGAG 1 cut(s) 492
Bst2UI CCWGG 2 cut(s) 630, 790
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 980
BstAFI CTTAAG 2 cut(s) 253, 317
BstAPI GCANNNNNTGC 1 cut(s) 659
BstC8I GCNNGC 9 cut(s) 15, 113, 208, 314, 394, 527, 531, 576, 818
BstDEI CTNAG 3 cut(s) 275, 443, 864
BstF5I GGATG 4 cut(s) 276, 285, 301, 964
BstFNI CGCG 1 cut(s) 576
BstHHI GCGC 2 cut(s) 576, 578
BstKTI GATC 2 cut(s) 840, 898
BstMAI GTCTC 2 cut(s) 310, 661
BstMBI GATC 2 cut(s) 837, 895
BstMWI GCNNNNNNNGC 4 cut(s) 10, 203, 659, 701
BstNI CCWGG 2 cut(s) 630, 790
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 3 cut(s) 8, 628, 788
BstSFI CTRYAG 2 cut(s) 300, 310
BstUI CGCG 1 cut(s) 576
BstV1I GCAGC 2 cut(s) 209, 583
Bsu15I ATCGAT 2 cut(s) 165, 501
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 1 cut(s) 816
BsuTUI ATCGAT 2 cut(s) 165, 501
BtsCI GGATG 4 cut(s) 276, 285, 301, 964
Cac8I GCNNGC 9 cut(s) 15, 113, 208, 314, 394, 527, 531, 576, 818
CaiI CAGNNNCTG 1 cut(s) 659
CfoI GCGC 2 cut(s) 576, 578
Cfr13I GGNCC 4 cut(s) 25, 619, 815, 851
ClaI ATCGAT 2 cut(s) 165, 501
CseI GACGC 3 cut(s) 189, 590, 591
CspCI CAANNNNNGTGG 2 cut(s) 273, 308
CviAII CATG 2 cut(s) 530, 841
DdeI CTNAG 3 cut(s) 275, 443, 864
DpnI GATC 2 cut(s) 839, 897
DpnII GATC 2 cut(s) 837, 895
Eam1104I CTCTTC 1 cut(s) 980
EarI CTCTTC 1 cut(s) 980
Eco24I GRGCYC 1 cut(s) 706
Eco47I GGWCC 3 cut(s) 25, 619, 851
Eco57I CTGAAG 3 cut(s) 126, 633, 854
EcoRII CCWGG 2 cut(s) 628, 788
EcoT38I GRGCYC 1 cut(s) 706
FaeI CATG 2 cut(s) 533, 844
FaqI GGGAC 1 cut(s) 605
FatI CATG 2 cut(s) 529, 840
FauI CCCGC 2 cut(s) 518, 825
Fnu4HI GCNGC 2 cut(s) 198, 572
FokI GGATG 4 cut(s) 283, 292, 308, 951
FriOI GRGCYC 1 cut(s) 706
Fsp4HI GCNGC 2 cut(s) 198, 572
FspBI CTAG 4 cut(s) 135, 347, 641, 834
GlaI GCGC 2 cut(s) 575, 577
GluI GCNGC 2 cut(s) 198, 572
HaeIII GGCC 1 cut(s) 816
HapII CCGG 2 cut(s) 10, 678
HgaI GACGC 3 cut(s) 189, 590, 591
HhaI GCGC 2 cut(s) 576, 578
Hin1II CATG 2 cut(s) 533, 844
Hin6I GCGC 2 cut(s) 574, 576
HinP1I GCGC 2 cut(s) 574, 576
HindIII AAGCTT 1 cut(s) 916
HinfI GANTC 3 cut(s) 241, 334, 751
HpaII CCGG 2 cut(s) 10, 678
HphI GGTGA 3 cut(s) 93, 236, 250
Hpy166II GTNNAC 1 cut(s) 594
Hpy188I TCNGA 3 cut(s) 175, 249, 895
Hpy188III TCNNGA 1 cut(s) 277
Hpy8I GTNNAC 1 cut(s) 594
Hpy99I CGWCG 2 cut(s) 89, 607
HpyAV CCTTC 8 cut(s) 15, 51, 101, 214, 629, 657, 914, 971
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 1 cut(s) 732
HpyCH4V TGCA 3 cut(s) 312, 533, 571
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 203, 659, 701
HpyF3I CTNAG 3 cut(s) 275, 443, 864
HpySE526I ACGT 1 cut(s) 732
Hsp92II CATG 2 cut(s) 533, 844
HspAI GCGC 2 cut(s) 574, 576
Kzo9I GATC 2 cut(s) 837, 895
LguI GCTCTTC 1 cut(s) 980
LmnI GCTCC 2 cut(s) 249, 667
Lsp1109I GCAGC 2 cut(s) 209, 583
LweI GCATC 2 cut(s) 261, 286
MaeI CTAG 4 cut(s) 135, 347, 641, 834
MaeII ACGT 1 cut(s) 732
MaeIII GTNAC 1 cut(s) 130
MalI GATC 2 cut(s) 839, 897
MboI GATC 2 cut(s) 837, 895
MboII GAAGA 4 cut(s) 236, 704, 760, 967
MfeI CAATTG 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 706
MluCI AATT 5 cut(s) 93, 228, 285, 708, 855
MmeI TCCRAC 2 cut(s) 652, 864
MnlI CCTC 7 cut(s) 80, 255, 324, 840, 841, 939, 978
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 4 cut(s) 59, 254, 318, 545
MslI CAYNNNNRTG 1 cut(s) 464
MspCI CTTAAG 2 cut(s) 253, 317
MspI CCGG 2 cut(s) 10, 678
MspR9I CCNGG 3 cut(s) 10, 630, 790
MunI CAATTG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 924
MvaI CCWGG 2 cut(s) 630, 790
MvnI CGCG 1 cut(s) 576
MwoI GCNNNNNNNGC 4 cut(s) 10, 203, 659, 701
NciI CCSGG 1 cut(s) 10
NdeII GATC 2 cut(s) 837, 895
NlaIII CATG 2 cut(s) 533, 844
NlaIV GGNNCC 3 cut(s) 621, 676, 852
NspI RCATGY 1 cut(s) 533
PaeI GCATGC 1 cut(s) 533
PauI GCGCGC 1 cut(s) 574
PciSI GCTCTTC 1 cut(s) 980
PctI GAATGC 1 cut(s) 924
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 3 cut(s) 241, 334, 751
PflFI GACNNNGTC 1 cut(s) 584
PkrI GCNGC 2 cut(s) 199, 573
Psp6I CCWGG 2 cut(s) 628, 788
PspGI CCWGG 2 cut(s) 628, 788
PspN4I GGNNCC 3 cut(s) 621, 676, 852
PspPI GGNCC 4 cut(s) 25, 619, 815, 851
PsrI GAACNNNNNNTAC 2 cut(s) 667, 699
PstI CTGCAG 1 cut(s) 314
PstNI CAGNNNCTG 1 cut(s) 659
PsyI GACNNNGTC 1 cut(s) 584
PteI GCGCGC 1 cut(s) 574
RseI CAYNNNNRTG 1 cut(s) 464
SapI GCTCTTC 1 cut(s) 980
SaqAI TTAA 4 cut(s) 59, 254, 318, 545
SatI GCNGC 2 cut(s) 198, 572
Sau3AI GATC 2 cut(s) 837, 895
Sau96I GGNCC 4 cut(s) 25, 619, 815, 851
SbfI CCTGCAGG 1 cut(s) 314
ScrFI CCNGG 3 cut(s) 10, 630, 790
SdaI CCTGCAGG 1 cut(s) 314
SduI GDGCHC 1 cut(s) 706
SfaNI GCATC 2 cut(s) 261, 286
SfcI CTRYAG 2 cut(s) 300, 310
SinI GGWCC 3 cut(s) 25, 619, 851
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 2 cut(s) 253, 317
SmoI CTYRAG 2 cut(s) 253, 317
SphI GCATGC 1 cut(s) 533
Sse8387I CCTGCAGG 1 cut(s) 314
Sse9I AATT 5 cut(s) 93, 228, 285, 708, 855
SsiI CCGC 7 cut(s) 195, 396, 434, 525, 617, 626, 818
SspMI CTAG 4 cut(s) 135, 347, 641, 834
StyD4I CCNGG 3 cut(s) 8, 628, 788
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 1 cut(s) 735
TaqI TCGA 5 cut(s) 44, 165, 427, 501, 605
TasI AATT 5 cut(s) 93, 228, 285, 708, 855
TfiI GAWTC 3 cut(s) 241, 334, 751
Tru1I TTAA 4 cut(s) 59, 254, 318, 545
Tru9I TTAA 4 cut(s) 59, 254, 318, 545
TseI GCWGC 2 cut(s) 197, 571
TspDTI ATGAA 7 cut(s) 77, 390, 413, 448, 623, 953, 967
Tth111I GACNNNGTC 1 cut(s) 584
Vha464I CTTAAG 2 cut(s) 253, 317
VpaK11BI GGWCC 3 cut(s) 25, 619, 851
XceI RCATGY 1 cut(s) 533
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 4 cut(s) 135, 347, 641, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.